Experiment: FrBurgundy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02398 and OHPLBJKB_02399 are separated by 268 nucleotides OHPLBJKB_02399 and OHPLBJKB_02400 are separated by 125 nucleotides OHPLBJKB_02400 and OHPLBJKB_02401 overlap by 1 nucleotides OHPLBJKB_02401 and OHPLBJKB_02402 are separated by 132 nucleotides
OHPLBJKB_02398: OHPLBJKB_02398 - Glucitol operon repressor, at 2,510,736 to 2,511,485
_02398
OHPLBJKB_02399: OHPLBJKB_02399 - Osmotically-inducible lipoprotein B, at 2,511,754 to 2,511,972
_02399
OHPLBJKB_02400: OHPLBJKB_02400 - putative protein YciH, at 2,512,098 to 2,512,424
_02400
OHPLBJKB_02401: OHPLBJKB_02401 - 'Orotidine 5'-phosphate decarboxylase' transl_table=11, at 2,512,424 to 2,513,221
_02401
OHPLBJKB_02402: OHPLBJKB_02402 - Lipopolysaccharide assembly protein B, at 2,513,354 to 2,514,523
_02402
Position (kb)
2512
2513 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2511.150 kb on + strand, within OHPLBJKB_02398 at 2511.170 kb on + strand, within OHPLBJKB_02398 at 2511.170 kb on + strand, within OHPLBJKB_02398 at 2511.171 kb on - strand, within OHPLBJKB_02398 at 2511.171 kb on - strand, within OHPLBJKB_02398 at 2511.227 kb on + strand, within OHPLBJKB_02398 at 2511.263 kb on + strand, within OHPLBJKB_02398 at 2511.264 kb on - strand, within OHPLBJKB_02398 at 2511.276 kb on - strand, within OHPLBJKB_02398 at 2511.362 kb on - strand, within OHPLBJKB_02398 at 2511.484 kb on - strand at 2511.501 kb on - strand at 2511.600 kb on + strand at 2511.644 kb on + strand at 2511.704 kb on + strand at 2511.705 kb on - strand at 2511.705 kb on - strand at 2511.708 kb on + strand at 2511.734 kb on + strand at 2511.750 kb on + strand at 2511.751 kb on - strand at 2511.751 kb on - strand at 2511.753 kb on + strand at 2511.909 kb on + strand, within OHPLBJKB_02399 at 2511.918 kb on + strand, within OHPLBJKB_02399 at 2511.924 kb on - strand, within OHPLBJKB_02399 at 2512.292 kb on + strand, within OHPLBJKB_02400 at 2512.298 kb on + strand, within OHPLBJKB_02400 at 2512.298 kb on + strand, within OHPLBJKB_02400 at 2512.376 kb on + strand, within OHPLBJKB_02400 at 2512.510 kb on + strand, within OHPLBJKB_02401 at 2512.511 kb on - strand, within OHPLBJKB_02401 at 2512.512 kb on + strand, within OHPLBJKB_02401 at 2512.513 kb on - strand, within OHPLBJKB_02401 at 2512.513 kb on - strand, within OHPLBJKB_02401 at 2512.513 kb on - strand, within OHPLBJKB_02401 at 2512.714 kb on - strand, within OHPLBJKB_02401 at 2512.847 kb on - strand, within OHPLBJKB_02401 at 2512.847 kb on - strand, within OHPLBJKB_02401 at 2512.927 kb on + strand, within OHPLBJKB_02401 at 2512.960 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.011 kb on + strand, within OHPLBJKB_02401 at 2513.012 kb on - strand, within OHPLBJKB_02401 at 2513.012 kb on - strand, within OHPLBJKB_02401 at 2513.012 kb on - strand, within OHPLBJKB_02401 at 2513.012 kb on - strand, within OHPLBJKB_02401 at 2513.094 kb on + strand, within OHPLBJKB_02401 at 2513.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction FrBurgundy remove 2,511,150 + OHPLBJKB_02398 0.55 +1.1 2,511,170 + OHPLBJKB_02398 0.58 -0.2 2,511,170 + OHPLBJKB_02398 0.58 -1.7 2,511,171 - OHPLBJKB_02398 0.58 +0.8 2,511,171 - OHPLBJKB_02398 0.58 +0.1 2,511,227 + OHPLBJKB_02398 0.65 +2.4 2,511,263 + OHPLBJKB_02398 0.70 -0.2 2,511,264 - OHPLBJKB_02398 0.70 -1.2 2,511,276 - OHPLBJKB_02398 0.72 -1.5 2,511,362 - OHPLBJKB_02398 0.83 +0.1 2,511,484 - +2.6 2,511,501 - +0.3 2,511,600 + -0.9 2,511,644 + +0.8 2,511,704 + +1.9 2,511,705 - -1.1 2,511,705 - +0.8 2,511,708 + +1.0 2,511,734 + +1.7 2,511,750 + +3.0 2,511,751 - +3.0 2,511,751 - +1.4 2,511,753 + +0.1 2,511,909 + OHPLBJKB_02399 0.71 -1.8 2,511,918 + OHPLBJKB_02399 0.75 +0.6 2,511,924 - OHPLBJKB_02399 0.78 +0.8 2,512,292 + OHPLBJKB_02400 0.59 +0.4 2,512,298 + OHPLBJKB_02400 0.61 -0.8 2,512,298 + OHPLBJKB_02400 0.61 -0.3 2,512,376 + OHPLBJKB_02400 0.85 -1.2 2,512,510 + OHPLBJKB_02401 0.11 -1.5 2,512,511 - OHPLBJKB_02401 0.11 -0.6 2,512,512 + OHPLBJKB_02401 0.11 +1.3 2,512,513 - OHPLBJKB_02401 0.11 -0.4 2,512,513 - OHPLBJKB_02401 0.11 +1.0 2,512,513 - OHPLBJKB_02401 0.11 -0.2 2,512,714 - OHPLBJKB_02401 0.36 -1.0 2,512,847 - OHPLBJKB_02401 0.53 +0.1 2,512,847 - OHPLBJKB_02401 0.53 +1.1 2,512,927 + OHPLBJKB_02401 0.63 -1.1 2,512,960 + OHPLBJKB_02401 0.67 -1.3 2,513,011 + OHPLBJKB_02401 0.74 -1.4 2,513,011 + OHPLBJKB_02401 0.74 -0.4 2,513,011 + OHPLBJKB_02401 0.74 +0.2 2,513,011 + OHPLBJKB_02401 0.74 +2.4 2,513,011 + OHPLBJKB_02401 0.74 -0.2 2,513,011 + OHPLBJKB_02401 0.74 +0.7 2,513,011 + OHPLBJKB_02401 0.74 +1.2 2,513,011 + OHPLBJKB_02401 0.74 -1.3 2,513,012 - OHPLBJKB_02401 0.74 -0.6 2,513,012 - OHPLBJKB_02401 0.74 -2.3 2,513,012 - OHPLBJKB_02401 0.74 -0.6 2,513,012 - OHPLBJKB_02401 0.74 -1.1 2,513,094 + OHPLBJKB_02401 0.84 +0.2 2,513,225 - -1.7
Or see this region's nucleotide sequence