Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02400

Experiment: FrBurgundy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02398 and OHPLBJKB_02399 are separated by 268 nucleotidesOHPLBJKB_02399 and OHPLBJKB_02400 are separated by 125 nucleotidesOHPLBJKB_02400 and OHPLBJKB_02401 overlap by 1 nucleotidesOHPLBJKB_02401 and OHPLBJKB_02402 are separated by 132 nucleotides OHPLBJKB_02398: OHPLBJKB_02398 - Glucitol operon repressor, at 2,510,736 to 2,511,485 _02398 OHPLBJKB_02399: OHPLBJKB_02399 - Osmotically-inducible lipoprotein B, at 2,511,754 to 2,511,972 _02399 OHPLBJKB_02400: OHPLBJKB_02400 - putative protein YciH, at 2,512,098 to 2,512,424 _02400 OHPLBJKB_02401: OHPLBJKB_02401 - 'Orotidine 5'-phosphate decarboxylase' transl_table=11, at 2,512,424 to 2,513,221 _02401 OHPLBJKB_02402: OHPLBJKB_02402 - Lipopolysaccharide assembly protein B, at 2,513,354 to 2,514,523 _02402 Position (kb) 2512 2513Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2511.150 kb on + strand, within OHPLBJKB_02398at 2511.170 kb on + strand, within OHPLBJKB_02398at 2511.170 kb on + strand, within OHPLBJKB_02398at 2511.171 kb on - strand, within OHPLBJKB_02398at 2511.171 kb on - strand, within OHPLBJKB_02398at 2511.227 kb on + strand, within OHPLBJKB_02398at 2511.263 kb on + strand, within OHPLBJKB_02398at 2511.264 kb on - strand, within OHPLBJKB_02398at 2511.276 kb on - strand, within OHPLBJKB_02398at 2511.362 kb on - strand, within OHPLBJKB_02398at 2511.484 kb on - strandat 2511.501 kb on - strandat 2511.600 kb on + strandat 2511.644 kb on + strandat 2511.704 kb on + strandat 2511.705 kb on - strandat 2511.705 kb on - strandat 2511.708 kb on + strandat 2511.734 kb on + strandat 2511.750 kb on + strandat 2511.751 kb on - strandat 2511.751 kb on - strandat 2511.753 kb on + strandat 2511.909 kb on + strand, within OHPLBJKB_02399at 2511.918 kb on + strand, within OHPLBJKB_02399at 2511.924 kb on - strand, within OHPLBJKB_02399at 2512.292 kb on + strand, within OHPLBJKB_02400at 2512.298 kb on + strand, within OHPLBJKB_02400at 2512.298 kb on + strand, within OHPLBJKB_02400at 2512.376 kb on + strand, within OHPLBJKB_02400at 2512.510 kb on + strand, within OHPLBJKB_02401at 2512.511 kb on - strand, within OHPLBJKB_02401at 2512.512 kb on + strand, within OHPLBJKB_02401at 2512.513 kb on - strand, within OHPLBJKB_02401at 2512.513 kb on - strand, within OHPLBJKB_02401at 2512.513 kb on - strand, within OHPLBJKB_02401at 2512.714 kb on - strand, within OHPLBJKB_02401at 2512.847 kb on - strand, within OHPLBJKB_02401at 2512.847 kb on - strand, within OHPLBJKB_02401at 2512.927 kb on + strand, within OHPLBJKB_02401at 2512.960 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.011 kb on + strand, within OHPLBJKB_02401at 2513.012 kb on - strand, within OHPLBJKB_02401at 2513.012 kb on - strand, within OHPLBJKB_02401at 2513.012 kb on - strand, within OHPLBJKB_02401at 2513.012 kb on - strand, within OHPLBJKB_02401at 2513.094 kb on + strand, within OHPLBJKB_02401at 2513.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FrBurgundy
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2,511,150 + OHPLBJKB_02398 0.55 +1.1
2,511,170 + OHPLBJKB_02398 0.58 -0.2
2,511,170 + OHPLBJKB_02398 0.58 -1.7
2,511,171 - OHPLBJKB_02398 0.58 +0.8
2,511,171 - OHPLBJKB_02398 0.58 +0.1
2,511,227 + OHPLBJKB_02398 0.65 +2.4
2,511,263 + OHPLBJKB_02398 0.70 -0.2
2,511,264 - OHPLBJKB_02398 0.70 -1.2
2,511,276 - OHPLBJKB_02398 0.72 -1.5
2,511,362 - OHPLBJKB_02398 0.83 +0.1
2,511,484 - +2.6
2,511,501 - +0.3
2,511,600 + -0.9
2,511,644 + +0.8
2,511,704 + +1.9
2,511,705 - -1.1
2,511,705 - +0.8
2,511,708 + +1.0
2,511,734 + +1.7
2,511,750 + +3.0
2,511,751 - +3.0
2,511,751 - +1.4
2,511,753 + +0.1
2,511,909 + OHPLBJKB_02399 0.71 -1.8
2,511,918 + OHPLBJKB_02399 0.75 +0.6
2,511,924 - OHPLBJKB_02399 0.78 +0.8
2,512,292 + OHPLBJKB_02400 0.59 +0.4
2,512,298 + OHPLBJKB_02400 0.61 -0.8
2,512,298 + OHPLBJKB_02400 0.61 -0.3
2,512,376 + OHPLBJKB_02400 0.85 -1.2
2,512,510 + OHPLBJKB_02401 0.11 -1.5
2,512,511 - OHPLBJKB_02401 0.11 -0.6
2,512,512 + OHPLBJKB_02401 0.11 +1.3
2,512,513 - OHPLBJKB_02401 0.11 -0.4
2,512,513 - OHPLBJKB_02401 0.11 +1.0
2,512,513 - OHPLBJKB_02401 0.11 -0.2
2,512,714 - OHPLBJKB_02401 0.36 -1.0
2,512,847 - OHPLBJKB_02401 0.53 +0.1
2,512,847 - OHPLBJKB_02401 0.53 +1.1
2,512,927 + OHPLBJKB_02401 0.63 -1.1
2,512,960 + OHPLBJKB_02401 0.67 -1.3
2,513,011 + OHPLBJKB_02401 0.74 -1.4
2,513,011 + OHPLBJKB_02401 0.74 -0.4
2,513,011 + OHPLBJKB_02401 0.74 +0.2
2,513,011 + OHPLBJKB_02401 0.74 +2.4
2,513,011 + OHPLBJKB_02401 0.74 -0.2
2,513,011 + OHPLBJKB_02401 0.74 +0.7
2,513,011 + OHPLBJKB_02401 0.74 +1.2
2,513,011 + OHPLBJKB_02401 0.74 -1.3
2,513,012 - OHPLBJKB_02401 0.74 -0.6
2,513,012 - OHPLBJKB_02401 0.74 -2.3
2,513,012 - OHPLBJKB_02401 0.74 -0.6
2,513,012 - OHPLBJKB_02401 0.74 -1.1
2,513,094 + OHPLBJKB_02401 0.84 +0.2
2,513,225 - -1.7

Or see this region's nucleotide sequence