Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03444

Experiment: FrSangria 10E1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03442 and OHPLBJKB_03443 are separated by 9 nucleotidesOHPLBJKB_03443 and OHPLBJKB_03444 are separated by 136 nucleotidesOHPLBJKB_03444 and OHPLBJKB_03445 are separated by 326 nucleotidesOHPLBJKB_03445 and OHPLBJKB_03446 are separated by 132 nucleotides OHPLBJKB_03442: OHPLBJKB_03442 - hypothetical protein, at 3,603,203 to 3,604,117 _03442 OHPLBJKB_03443: OHPLBJKB_03443 - hypothetical protein, at 3,604,127 to 3,604,606 _03443 OHPLBJKB_03444: OHPLBJKB_03444 - hypothetical protein, at 3,604,743 to 3,605,528 _03444 OHPLBJKB_03445: OHPLBJKB_03445 - tRNA-Asp, at 3,605,855 to 3,605,931 _03445 OHPLBJKB_03446: OHPLBJKB_03446 - DNA polymerase III subunit epsilon, at 3,606,064 to 3,606,804 _03446 Position (kb) 3604 3605 3606Strain fitness (log2 ratio) -1 0 1 2 3at 3603.754 kb on - strand, within OHPLBJKB_03442at 3603.899 kb on - strand, within OHPLBJKB_03442at 3604.085 kb on - strandat 3604.381 kb on - strand, within OHPLBJKB_03443at 3604.407 kb on + strand, within OHPLBJKB_03443at 3604.435 kb on - strand, within OHPLBJKB_03443at 3604.444 kb on - strand, within OHPLBJKB_03443at 3604.444 kb on - strand, within OHPLBJKB_03443at 3604.511 kb on - strand, within OHPLBJKB_03443at 3604.539 kb on - strand, within OHPLBJKB_03443at 3604.871 kb on + strand, within OHPLBJKB_03444at 3604.872 kb on - strand, within OHPLBJKB_03444at 3604.874 kb on - strand, within OHPLBJKB_03444at 3604.879 kb on + strand, within OHPLBJKB_03444at 3604.945 kb on + strand, within OHPLBJKB_03444at 3604.982 kb on + strand, within OHPLBJKB_03444at 3605.213 kb on + strand, within OHPLBJKB_03444at 3605.219 kb on - strand, within OHPLBJKB_03444at 3605.277 kb on + strand, within OHPLBJKB_03444at 3605.605 kb on + strandat 3605.749 kb on - strandat 3606.062 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FrSangria 10E1
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3,603,754 - OHPLBJKB_03442 0.60 +1.2
3,603,899 - OHPLBJKB_03442 0.76 +2.3
3,604,085 - -1.7
3,604,381 - OHPLBJKB_03443 0.53 -0.6
3,604,407 + OHPLBJKB_03443 0.58 +3.6
3,604,435 - OHPLBJKB_03443 0.64 +1.2
3,604,444 - OHPLBJKB_03443 0.66 +0.9
3,604,444 - OHPLBJKB_03443 0.66 -1.4
3,604,511 - OHPLBJKB_03443 0.80 +3.1
3,604,539 - OHPLBJKB_03443 0.86 +0.1
3,604,871 + OHPLBJKB_03444 0.16 +1.6
3,604,872 - OHPLBJKB_03444 0.16 +0.6
3,604,874 - OHPLBJKB_03444 0.17 +2.0
3,604,879 + OHPLBJKB_03444 0.17 +1.0
3,604,945 + OHPLBJKB_03444 0.26 +0.9
3,604,982 + OHPLBJKB_03444 0.30 +0.5
3,605,213 + OHPLBJKB_03444 0.60 +0.6
3,605,219 - OHPLBJKB_03444 0.61 +0.8
3,605,277 + OHPLBJKB_03444 0.68 +1.5
3,605,605 + +1.0
3,605,749 - -0.2
3,606,062 - -1.7

Or see this region's nucleotide sequence