Experiment: FrSangria 10E1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03442 and OHPLBJKB_03443 are separated by 9 nucleotides OHPLBJKB_03443 and OHPLBJKB_03444 are separated by 136 nucleotides OHPLBJKB_03444 and OHPLBJKB_03445 are separated by 326 nucleotides OHPLBJKB_03445 and OHPLBJKB_03446 are separated by 132 nucleotides
OHPLBJKB_03442: OHPLBJKB_03442 - hypothetical protein, at 3,603,203 to 3,604,117
_03442
OHPLBJKB_03443: OHPLBJKB_03443 - hypothetical protein, at 3,604,127 to 3,604,606
_03443
OHPLBJKB_03444: OHPLBJKB_03444 - hypothetical protein, at 3,604,743 to 3,605,528
_03444
OHPLBJKB_03445: OHPLBJKB_03445 - tRNA-Asp, at 3,605,855 to 3,605,931
_03445
OHPLBJKB_03446: OHPLBJKB_03446 - DNA polymerase III subunit epsilon, at 3,606,064 to 3,606,804
_03446
Position (kb)
3604
3605
3606 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3603.754 kb on - strand, within OHPLBJKB_03442 at 3603.899 kb on - strand, within OHPLBJKB_03442 at 3604.085 kb on - strand at 3604.381 kb on - strand, within OHPLBJKB_03443 at 3604.407 kb on + strand, within OHPLBJKB_03443 at 3604.435 kb on - strand, within OHPLBJKB_03443 at 3604.444 kb on - strand, within OHPLBJKB_03443 at 3604.444 kb on - strand, within OHPLBJKB_03443 at 3604.511 kb on - strand, within OHPLBJKB_03443 at 3604.539 kb on - strand, within OHPLBJKB_03443 at 3604.871 kb on + strand, within OHPLBJKB_03444 at 3604.872 kb on - strand, within OHPLBJKB_03444 at 3604.874 kb on - strand, within OHPLBJKB_03444 at 3604.879 kb on + strand, within OHPLBJKB_03444 at 3604.945 kb on + strand, within OHPLBJKB_03444 at 3604.982 kb on + strand, within OHPLBJKB_03444 at 3605.213 kb on + strand, within OHPLBJKB_03444 at 3605.219 kb on - strand, within OHPLBJKB_03444 at 3605.277 kb on + strand, within OHPLBJKB_03444 at 3605.605 kb on + strand at 3605.749 kb on - strand at 3606.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction FrSangria 10E1 remove 3,603,754 - OHPLBJKB_03442 0.60 +1.2 3,603,899 - OHPLBJKB_03442 0.76 +2.3 3,604,085 - -1.7 3,604,381 - OHPLBJKB_03443 0.53 -0.6 3,604,407 + OHPLBJKB_03443 0.58 +3.6 3,604,435 - OHPLBJKB_03443 0.64 +1.2 3,604,444 - OHPLBJKB_03443 0.66 +0.9 3,604,444 - OHPLBJKB_03443 0.66 -1.4 3,604,511 - OHPLBJKB_03443 0.80 +3.1 3,604,539 - OHPLBJKB_03443 0.86 +0.1 3,604,871 + OHPLBJKB_03444 0.16 +1.6 3,604,872 - OHPLBJKB_03444 0.16 +0.6 3,604,874 - OHPLBJKB_03444 0.17 +2.0 3,604,879 + OHPLBJKB_03444 0.17 +1.0 3,604,945 + OHPLBJKB_03444 0.26 +0.9 3,604,982 + OHPLBJKB_03444 0.30 +0.5 3,605,213 + OHPLBJKB_03444 0.60 +0.6 3,605,219 - OHPLBJKB_03444 0.61 +0.8 3,605,277 + OHPLBJKB_03444 0.68 +1.5 3,605,605 + +1.0 3,605,749 - -0.2 3,606,062 - -1.7
Or see this region's nucleotide sequence