Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03436

Experiment: FrSangria

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03434 and OHPLBJKB_03435 are separated by 4 nucleotidesOHPLBJKB_03435 and OHPLBJKB_03436 are separated by 8 nucleotidesOHPLBJKB_03436 and OHPLBJKB_03437 overlap by 4 nucleotidesOHPLBJKB_03437 and OHPLBJKB_03438 are separated by 4 nucleotides OHPLBJKB_03434: OHPLBJKB_03434 - hypothetical protein, at 3,590,713 to 3,592,044 _03434 OHPLBJKB_03435: OHPLBJKB_03435 - hypothetical protein, at 3,592,049 to 3,592,810 _03435 OHPLBJKB_03436: OHPLBJKB_03436 - Protein ClpV1, at 3,592,819 to 3,595,590 _03436 OHPLBJKB_03437: OHPLBJKB_03437 - hypothetical protein, at 3,595,587 to 3,596,330 _03437 OHPLBJKB_03438: OHPLBJKB_03438 - hypothetical protein, at 3,596,335 to 3,597,747 _03438 Position (kb) 3592 3593 3594 3595 3596Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3591.837 kb on + strand, within OHPLBJKB_03434at 3591.837 kb on + strand, within OHPLBJKB_03434at 3591.923 kb on - strandat 3591.993 kb on - strandat 3592.034 kb on + strandat 3592.183 kb on - strand, within OHPLBJKB_03435at 3592.183 kb on - strand, within OHPLBJKB_03435at 3592.286 kb on + strand, within OHPLBJKB_03435at 3592.316 kb on + strand, within OHPLBJKB_03435at 3592.317 kb on - strand, within OHPLBJKB_03435at 3592.334 kb on - strand, within OHPLBJKB_03435at 3592.478 kb on + strand, within OHPLBJKB_03435at 3592.577 kb on + strand, within OHPLBJKB_03435at 3592.589 kb on + strand, within OHPLBJKB_03435at 3592.603 kb on + strand, within OHPLBJKB_03435at 3592.608 kb on + strand, within OHPLBJKB_03435at 3592.609 kb on - strand, within OHPLBJKB_03435at 3592.737 kb on - strandat 3592.746 kb on - strandat 3592.746 kb on - strandat 3592.746 kb on - strandat 3592.746 kb on - strandat 3592.792 kb on - strandat 3592.818 kb on + strandat 3592.819 kb on - strandat 3592.902 kb on + strandat 3592.902 kb on + strandat 3592.903 kb on - strandat 3592.903 kb on - strandat 3592.903 kb on - strandat 3592.983 kb on + strandat 3593.044 kb on + strandat 3593.045 kb on - strandat 3593.200 kb on + strand, within OHPLBJKB_03436at 3593.200 kb on + strand, within OHPLBJKB_03436at 3593.200 kb on + strand, within OHPLBJKB_03436at 3593.200 kb on + strand, within OHPLBJKB_03436at 3593.201 kb on - strand, within OHPLBJKB_03436at 3593.202 kb on + strand, within OHPLBJKB_03436at 3593.203 kb on - strand, within OHPLBJKB_03436at 3593.203 kb on - strand, within OHPLBJKB_03436at 3593.204 kb on + strand, within OHPLBJKB_03436at 3593.718 kb on + strand, within OHPLBJKB_03436at 3593.718 kb on + strand, within OHPLBJKB_03436at 3593.920 kb on - strand, within OHPLBJKB_03436at 3593.944 kb on + strand, within OHPLBJKB_03436at 3594.013 kb on + strand, within OHPLBJKB_03436at 3594.013 kb on + strand, within OHPLBJKB_03436at 3594.014 kb on - strand, within OHPLBJKB_03436at 3594.300 kb on + strand, within OHPLBJKB_03436at 3594.301 kb on - strand, within OHPLBJKB_03436at 3594.867 kb on + strand, within OHPLBJKB_03436at 3594.867 kb on + strand, within OHPLBJKB_03436at 3594.867 kb on + strand, within OHPLBJKB_03436at 3594.868 kb on - strand, within OHPLBJKB_03436at 3594.868 kb on - strand, within OHPLBJKB_03436at 3594.868 kb on - strand, within OHPLBJKB_03436at 3594.868 kb on - strand, within OHPLBJKB_03436at 3594.891 kb on + strand, within OHPLBJKB_03436at 3594.892 kb on - strand, within OHPLBJKB_03436at 3594.925 kb on + strand, within OHPLBJKB_03436at 3594.926 kb on - strand, within OHPLBJKB_03436at 3594.987 kb on - strand, within OHPLBJKB_03436at 3594.989 kb on + strand, within OHPLBJKB_03436at 3594.990 kb on - strand, within OHPLBJKB_03436at 3594.990 kb on - strand, within OHPLBJKB_03436at 3595.039 kb on + strand, within OHPLBJKB_03436at 3595.140 kb on - strand, within OHPLBJKB_03436at 3595.140 kb on - strand, within OHPLBJKB_03436at 3595.142 kb on + strand, within OHPLBJKB_03436at 3595.345 kb on - strandat 3595.346 kb on + strandat 3595.346 kb on + strandat 3595.347 kb on - strandat 3595.347 kb on - strandat 3595.435 kb on - strandat 3595.435 kb on - strandat 3595.483 kb on - strandat 3595.626 kb on - strandat 3596.348 kb on + strandat 3596.349 kb on - strandat 3596.349 kb on - strandat 3596.443 kb on + strandat 3596.444 kb on - strandat 3596.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FrSangria
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3,591,837 + OHPLBJKB_03434 0.84 -2.3
3,591,837 + OHPLBJKB_03434 0.84 +2.6
3,591,923 - +0.2
3,591,993 - +0.0
3,592,034 + -1.4
3,592,183 - OHPLBJKB_03435 0.18 -0.4
3,592,183 - OHPLBJKB_03435 0.18 -1.2
3,592,286 + OHPLBJKB_03435 0.31 +0.4
3,592,316 + OHPLBJKB_03435 0.35 +0.3
3,592,317 - OHPLBJKB_03435 0.35 -0.7
3,592,334 - OHPLBJKB_03435 0.37 +0.4
3,592,478 + OHPLBJKB_03435 0.56 +4.6
3,592,577 + OHPLBJKB_03435 0.69 +0.7
3,592,589 + OHPLBJKB_03435 0.71 +2.1
3,592,603 + OHPLBJKB_03435 0.73 +0.3
3,592,608 + OHPLBJKB_03435 0.73 -0.6
3,592,609 - OHPLBJKB_03435 0.73 -1.2
3,592,737 - -1.1
3,592,746 - -0.5
3,592,746 - -0.6
3,592,746 - -0.8
3,592,746 - +0.4
3,592,792 - -1.4
3,592,818 + -2.6
3,592,819 - +0.4
3,592,902 + +0.6
3,592,902 + +0.3
3,592,903 - +1.4
3,592,903 - -1.6
3,592,903 - +0.5
3,592,983 + -0.0
3,593,044 + +0.4
3,593,045 - -0.0
3,593,200 + OHPLBJKB_03436 0.14 +1.7
3,593,200 + OHPLBJKB_03436 0.14 +0.4
3,593,200 + OHPLBJKB_03436 0.14 +0.6
3,593,200 + OHPLBJKB_03436 0.14 +1.8
3,593,201 - OHPLBJKB_03436 0.14 +0.0
3,593,202 + OHPLBJKB_03436 0.14 -0.4
3,593,203 - OHPLBJKB_03436 0.14 -1.7
3,593,203 - OHPLBJKB_03436 0.14 +1.2
3,593,204 + OHPLBJKB_03436 0.14 +0.4
3,593,718 + OHPLBJKB_03436 0.32 -0.4
3,593,718 + OHPLBJKB_03436 0.32 -1.1
3,593,920 - OHPLBJKB_03436 0.40 +1.7
3,593,944 + OHPLBJKB_03436 0.41 +1.6
3,594,013 + OHPLBJKB_03436 0.43 -0.4
3,594,013 + OHPLBJKB_03436 0.43 -2.5
3,594,014 - OHPLBJKB_03436 0.43 +3.0
3,594,300 + OHPLBJKB_03436 0.53 -2.2
3,594,301 - OHPLBJKB_03436 0.53 +0.7
3,594,867 + OHPLBJKB_03436 0.74 -1.3
3,594,867 + OHPLBJKB_03436 0.74 -0.4
3,594,867 + OHPLBJKB_03436 0.74 +1.3
3,594,868 - OHPLBJKB_03436 0.74 -0.5
3,594,868 - OHPLBJKB_03436 0.74 +0.6
3,594,868 - OHPLBJKB_03436 0.74 +1.0
3,594,868 - OHPLBJKB_03436 0.74 -1.5
3,594,891 + OHPLBJKB_03436 0.75 +1.4
3,594,892 - OHPLBJKB_03436 0.75 +0.9
3,594,925 + OHPLBJKB_03436 0.76 +1.9
3,594,926 - OHPLBJKB_03436 0.76 +0.1
3,594,987 - OHPLBJKB_03436 0.78 +1.0
3,594,989 + OHPLBJKB_03436 0.78 +0.3
3,594,990 - OHPLBJKB_03436 0.78 +1.0
3,594,990 - OHPLBJKB_03436 0.78 -1.7
3,595,039 + OHPLBJKB_03436 0.80 -0.0
3,595,140 - OHPLBJKB_03436 0.84 -0.6
3,595,140 - OHPLBJKB_03436 0.84 -1.1
3,595,142 + OHPLBJKB_03436 0.84 -1.4
3,595,345 - -0.1
3,595,346 + -0.7
3,595,346 + +0.4
3,595,347 - +2.7
3,595,347 - -0.8
3,595,435 - +0.1
3,595,435 - -0.8
3,595,483 - -1.4
3,595,626 - +0.5
3,596,348 + -1.3
3,596,349 - -2.3
3,596,349 - +1.6
3,596,443 + -1.3
3,596,444 - -0.6
3,596,446 - +0.5

Or see this region's nucleotide sequence