Experiment: FrSangria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03217 and OHPLBJKB_03218 are separated by 41 nucleotides OHPLBJKB_03218 and OHPLBJKB_03219 are separated by 399 nucleotides OHPLBJKB_03219 and OHPLBJKB_03220 are separated by 30 nucleotides
OHPLBJKB_03217: OHPLBJKB_03217 - putative cyclic di-GMP phosphodiesterase PdeB, at 3,357,956 to 3,359,506
_03217
OHPLBJKB_03218: OHPLBJKB_03218 - putative protein YbaA, at 3,359,548 to 3,359,880
_03218
OHPLBJKB_03219: OHPLBJKB_03219 - DNA base-flipping protein, at 3,360,280 to 3,360,591
_03219
OHPLBJKB_03220: OHPLBJKB_03220 - putative lipoprotein YbaY, at 3,360,622 to 3,361,194
_03220
Position (kb)
3359
3360 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3358.582 kb on + strand, within OHPLBJKB_03217 at 3358.595 kb on + strand, within OHPLBJKB_03217 at 3358.624 kb on + strand, within OHPLBJKB_03217 at 3358.625 kb on - strand, within OHPLBJKB_03217 at 3358.687 kb on + strand, within OHPLBJKB_03217 at 3358.687 kb on + strand, within OHPLBJKB_03217 at 3358.745 kb on - strand, within OHPLBJKB_03217 at 3358.745 kb on - strand, within OHPLBJKB_03217 at 3358.805 kb on - strand, within OHPLBJKB_03217 at 3358.818 kb on - strand, within OHPLBJKB_03217 at 3358.837 kb on - strand, within OHPLBJKB_03217 at 3358.894 kb on + strand, within OHPLBJKB_03217 at 3358.894 kb on + strand, within OHPLBJKB_03217 at 3358.895 kb on - strand, within OHPLBJKB_03217 at 3358.895 kb on - strand, within OHPLBJKB_03217 at 3358.918 kb on + strand, within OHPLBJKB_03217 at 3358.970 kb on - strand, within OHPLBJKB_03217 at 3358.971 kb on + strand, within OHPLBJKB_03217 at 3358.972 kb on - strand, within OHPLBJKB_03217 at 3358.972 kb on - strand, within OHPLBJKB_03217 at 3358.990 kb on + strand, within OHPLBJKB_03217 at 3359.026 kb on + strand, within OHPLBJKB_03217 at 3359.027 kb on - strand, within OHPLBJKB_03217 at 3359.027 kb on - strand, within OHPLBJKB_03217 at 3359.027 kb on - strand, within OHPLBJKB_03217 at 3359.179 kb on - strand, within OHPLBJKB_03217 at 3359.252 kb on + strand, within OHPLBJKB_03217 at 3359.252 kb on + strand, within OHPLBJKB_03217 at 3359.253 kb on - strand, within OHPLBJKB_03217 at 3359.256 kb on + strand, within OHPLBJKB_03217 at 3359.256 kb on + strand, within OHPLBJKB_03217 at 3359.256 kb on + strand, within OHPLBJKB_03217 at 3359.315 kb on + strand, within OHPLBJKB_03217 at 3359.315 kb on + strand, within OHPLBJKB_03217 at 3359.316 kb on - strand, within OHPLBJKB_03217 at 3359.316 kb on - strand, within OHPLBJKB_03217 at 3359.317 kb on + strand, within OHPLBJKB_03217 at 3359.395 kb on + strand at 3359.450 kb on + strand at 3359.549 kb on + strand at 3359.550 kb on - strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.580 kb on - strand at 3359.764 kb on + strand, within OHPLBJKB_03218 at 3359.790 kb on + strand, within OHPLBJKB_03218 at 3359.894 kb on + strand at 3359.894 kb on + strand at 3359.894 kb on + strand at 3359.894 kb on + strand at 3359.895 kb on - strand at 3359.895 kb on - strand at 3359.895 kb on - strand at 3359.908 kb on + strand at 3359.908 kb on + strand at 3359.908 kb on + strand at 3359.908 kb on + strand at 3359.909 kb on - strand at 3360.250 kb on + strand at 3360.251 kb on - strand at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.344 kb on - strand, within OHPLBJKB_03219 at 3360.344 kb on - strand, within OHPLBJKB_03219 at 3360.355 kb on + strand, within OHPLBJKB_03219 at 3360.586 kb on + strand at 3360.586 kb on + strand at 3360.590 kb on - strand at 3360.623 kb on + strand at 3360.626 kb on + strand at 3360.626 kb on + strand at 3360.634 kb on - strand at 3360.685 kb on + strand, within OHPLBJKB_03220 at 3360.686 kb on - strand, within OHPLBJKB_03220 at 3360.763 kb on - strand, within OHPLBJKB_03220 at 3360.804 kb on + strand, within OHPLBJKB_03220 at 3360.804 kb on + strand, within OHPLBJKB_03220 at 3360.805 kb on - strand, within OHPLBJKB_03220 at 3360.805 kb on - strand, within OHPLBJKB_03220 at 3360.808 kb on + strand, within OHPLBJKB_03220 at 3360.809 kb on - strand, within OHPLBJKB_03220 at 3360.879 kb on + strand, within OHPLBJKB_03220 at 3360.879 kb on + strand, within OHPLBJKB_03220
Per-strain Table
Position Strand Gene LocusTag Fraction FrSangria remove 3,358,582 + OHPLBJKB_03217 0.40 +0.4 3,358,595 + OHPLBJKB_03217 0.41 +1.0 3,358,624 + OHPLBJKB_03217 0.43 -1.1 3,358,625 - OHPLBJKB_03217 0.43 -0.2 3,358,687 + OHPLBJKB_03217 0.47 +2.6 3,358,687 + OHPLBJKB_03217 0.47 +0.8 3,358,745 - OHPLBJKB_03217 0.51 +0.8 3,358,745 - OHPLBJKB_03217 0.51 -0.2 3,358,805 - OHPLBJKB_03217 0.55 +0.8 3,358,818 - OHPLBJKB_03217 0.56 +2.5 3,358,837 - OHPLBJKB_03217 0.57 -0.5 3,358,894 + OHPLBJKB_03217 0.60 -0.4 3,358,894 + OHPLBJKB_03217 0.60 -0.1 3,358,895 - OHPLBJKB_03217 0.61 +4.2 3,358,895 - OHPLBJKB_03217 0.61 +1.3 3,358,918 + OHPLBJKB_03217 0.62 -0.2 3,358,970 - OHPLBJKB_03217 0.65 -1.7 3,358,971 + OHPLBJKB_03217 0.65 -1.0 3,358,972 - OHPLBJKB_03217 0.66 -0.9 3,358,972 - OHPLBJKB_03217 0.66 -1.0 3,358,990 + OHPLBJKB_03217 0.67 +0.8 3,359,026 + OHPLBJKB_03217 0.69 -0.8 3,359,027 - OHPLBJKB_03217 0.69 +1.6 3,359,027 - OHPLBJKB_03217 0.69 -2.7 3,359,027 - OHPLBJKB_03217 0.69 +0.6 3,359,179 - OHPLBJKB_03217 0.79 +1.8 3,359,252 + OHPLBJKB_03217 0.84 -0.1 3,359,252 + OHPLBJKB_03217 0.84 -0.3 3,359,253 - OHPLBJKB_03217 0.84 +0.1 3,359,256 + OHPLBJKB_03217 0.84 -0.6 3,359,256 + OHPLBJKB_03217 0.84 +1.3 3,359,256 + OHPLBJKB_03217 0.84 -2.0 3,359,315 + OHPLBJKB_03217 0.88 +0.7 3,359,315 + OHPLBJKB_03217 0.88 -2.1 3,359,316 - OHPLBJKB_03217 0.88 -1.4 3,359,316 - OHPLBJKB_03217 0.88 +2.0 3,359,317 + OHPLBJKB_03217 0.88 +0.7 3,359,395 + +0.0 3,359,450 + +3.6 3,359,549 + +0.1 3,359,550 - +1.6 3,359,579 + -2.4 3,359,579 + -3.4 3,359,579 + -2.7 3,359,579 + -0.2 3,359,579 + +0.8 3,359,580 - +1.7 3,359,764 + OHPLBJKB_03218 0.65 -2.5 3,359,790 + OHPLBJKB_03218 0.73 +0.6 3,359,894 + +1.1 3,359,894 + +0.5 3,359,894 + +1.2 3,359,894 + +0.3 3,359,895 - +1.8 3,359,895 - -2.1 3,359,895 - -0.3 3,359,908 + +0.1 3,359,908 + -2.2 3,359,908 + +0.4 3,359,908 + -0.2 3,359,909 - +0.2 3,360,250 + +1.4 3,360,251 - -2.3 3,360,343 + OHPLBJKB_03219 0.20 -1.0 3,360,343 + OHPLBJKB_03219 0.20 +0.4 3,360,343 + OHPLBJKB_03219 0.20 -0.2 3,360,343 + OHPLBJKB_03219 0.20 +0.3 3,360,344 - OHPLBJKB_03219 0.21 -0.4 3,360,344 - OHPLBJKB_03219 0.21 +0.1 3,360,355 + OHPLBJKB_03219 0.24 +0.1 3,360,586 + +2.6 3,360,586 + +0.7 3,360,590 - +0.6 3,360,623 + +0.1 3,360,626 + +0.5 3,360,626 + -2.6 3,360,634 - -1.4 3,360,685 + OHPLBJKB_03220 0.11 -1.0 3,360,686 - OHPLBJKB_03220 0.11 -0.7 3,360,763 - OHPLBJKB_03220 0.25 -1.3 3,360,804 + OHPLBJKB_03220 0.32 -2.3 3,360,804 + OHPLBJKB_03220 0.32 -2.5 3,360,805 - OHPLBJKB_03220 0.32 -0.6 3,360,805 - OHPLBJKB_03220 0.32 +0.7 3,360,808 + OHPLBJKB_03220 0.32 -0.6 3,360,809 - OHPLBJKB_03220 0.33 -0.7 3,360,879 + OHPLBJKB_03220 0.45 +1.0 3,360,879 + OHPLBJKB_03220 0.45 -0.4
Or see this region's nucleotide sequence