Strain Fitness in Pseudomonas sp. RS175 around PFR28_04705

Experiment: Fumarate (C) 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C) 20 mM
5,363,013	+		PFR28_04703	0.40	+0.1
5,363,014	-		PFR28_04703	0.40	+0.5
5,363,120	+		PFR28_04703	0.64	-0.0
5,363,121	-		PFR28_04703	0.64	+1.0
5,363,134	+		PFR28_04703	0.67	+0.5
5,363,134	+		PFR28_04703	0.67	+0.0
5,363,212	+		PFR28_04703	0.85	-0.6
5,363,212	+		PFR28_04703	0.85	-0.5
5,363,213	-		PFR28_04703	0.85	-0.2
5,363,213	-		PFR28_04703	0.85	-0.5
5,363,242	+				+0.9
5,363,276	+				+0.3
5,363,276	+				+0.4
5,363,276	+				-0.3
5,363,277	-				-0.4
5,363,277	-				-0.6
5,363,341	+				-1.5
5,363,341	+				+0.8
5,363,341	+				+0.2
5,363,341	+				+0.3
5,363,341	+				+0.1
5,363,341	+				-0.5
5,363,342	-				+1.0
5,363,342	-				+0.0
5,363,342	-				+0.4
5,363,342	-				+0.3
5,363,342	-				-0.4
5,363,342	-				-0.7
5,363,342	-				-0.4
5,363,342	-				-0.4
5,363,417	+				+0.8
5,363,417	+				+1.4
5,363,417	+				+0.5
5,363,417	+				+0.1
5,363,417	+				+0.4
5,363,424	+				+0.6
5,363,424	+				-0.2
5,363,424	+				-0.4
5,363,425	-				+0.1
5,363,455	-				-0.3
5,363,561	+		PFR28_04704	0.12	+0.7
5,363,561	+		PFR28_04704	0.12	-0.2
5,363,561	+		PFR28_04704	0.12	-1.0
5,363,561	+		PFR28_04704	0.12	-0.2
5,363,562	-		PFR28_04704	0.13	-0.3
5,363,562	-		PFR28_04704	0.13	-0.4
5,363,562	-		PFR28_04704	0.13	+1.3
5,363,562	-		PFR28_04704	0.13	-0.0
5,363,572	+		PFR28_04704	0.15	+0.2
5,363,572	+		PFR28_04704	0.15	-0.3
5,363,572	+		PFR28_04704	0.15	+0.3
5,363,572	+		PFR28_04704	0.15	-1.0
5,363,572	+		PFR28_04704	0.15	+0.1
5,363,572	+		PFR28_04704	0.15	+0.6
5,363,573	-		PFR28_04704	0.16	-0.9
5,363,573	-		PFR28_04704	0.16	-0.5
5,363,573	-		PFR28_04704	0.16	-0.4
5,363,573	-		PFR28_04704	0.16	+0.1
5,363,573	-		PFR28_04704	0.16	-0.5
5,363,584	+		PFR28_04704	0.19	-0.5
5,363,584	+		PFR28_04704	0.19	+0.8
5,363,584	+		PFR28_04704	0.19	+0.3
5,363,632	+		PFR28_04704	0.32	-0.1
5,363,695	-		PFR28_04704	0.49	-0.8
5,363,695	-		PFR28_04704	0.49	-0.8
5,363,753	+		PFR28_04704	0.65	+0.0
5,363,768	+		PFR28_04704	0.69	-0.0
5,363,768	+		PFR28_04704	0.69	-0.0
5,363,768	+		PFR28_04704	0.69	-0.3
5,363,769	-		PFR28_04704	0.69	-0.9
5,363,782	+		PFR28_04704	0.73	+0.5
5,363,782	+		PFR28_04704	0.73	-0.1
5,363,783	-		PFR28_04704	0.73	-0.6
5,363,791	-		PFR28_04704	0.75	-0.2
5,363,791	-		PFR28_04704	0.75	+0.3
5,363,791	-		PFR28_04704	0.75	+0.8
5,363,812	+		PFR28_04704	0.81	-0.8
5,363,813	-		PFR28_04704	0.81	+1.0
5,363,819	+		PFR28_04704	0.83	+0.1
5,363,819	+		PFR28_04704	0.83	-1.2
5,363,819	+		PFR28_04704	0.83	-1.9
5,363,819	+		PFR28_04704	0.83	-1.3
5,363,819	+		PFR28_04704	0.83	-1.2
5,363,819	+		PFR28_04704	0.83	+1.0
5,363,820	-		PFR28_04704	0.83	+0.5
5,363,820	-		PFR28_04704	0.83	-2.0
5,363,820	-		PFR28_04704	0.83	-0.6
5,363,820	-		PFR28_04704	0.83	-0.4
5,363,820	-		PFR28_04704	0.83	-0.1
5,363,820	-		PFR28_04704	0.83	-0.3
5,363,820	-		PFR28_04704	0.83	+0.1
5,363,870	+				-0.2
5,363,870	+				-0.1
5,363,870	+				-0.7
5,363,870	+				+0.6
5,363,870	+				-0.2
5,363,870	+				-0.8
5,363,871	-				-2.0
5,363,871	-				+0.3
5,363,871	-				-0.1
5,363,871	-				-0.1
5,363,871	-				+0.1
5,363,871	-				+0.2
5,363,871	-				+3.0
5,363,871	-				+0.1
5,363,871	-				-0.9
5,363,944	+				-0.3
5,363,944	+				-0.7
5,363,944	+				-0.4
5,363,945	-				+0.5
5,363,945	-				-0.3
5,363,945	-				+0.4
5,363,945	-				-0.2
5,363,958	+				+0.1
5,363,958	+				+1.2
5,363,958	+				+0.8
5,363,958	+				+0.9
5,363,958	+				-0.3
5,363,958	+				-0.2
5,363,958	+				+0.6
5,363,959	-				+0.3
5,363,959	-				+1.6
5,363,959	-				-0.2
5,363,959	-				-1.1
5,363,959	-				-0.1
5,363,959	-				-0.6
5,363,960	+				+1.0
5,363,961	-				-0.9
5,363,961	-				-0.8
5,363,961	-				-0.7
5,363,961	-				-0.7
5,363,961	-				-0.2
5,363,961	-				+0.2
5,364,091	-				-0.0
5,364,092	+				+0.5
5,364,092	+				-0.9
5,364,093	-				-0.5
5,364,093	-				-0.5
5,364,116	-		PFR28_04705	0.12	+0.1
5,364,116	-		PFR28_04705	0.12	+0.7
5,364,158	+		PFR28_04705	0.16	-0.1
5,364,158	+		PFR28_04705	0.16	-0.1
5,364,158	+		PFR28_04705	0.16	+0.0
5,364,158	+		PFR28_04705	0.16	+1.0
5,364,158	+		PFR28_04705	0.16	-0.6
5,364,158	+		PFR28_04705	0.16	-0.6
5,364,158	+		PFR28_04705	0.16	-0.2
5,364,158	+		PFR28_04705	0.16	+0.3
5,364,158	+		PFR28_04705	0.16	+0.3
5,364,158	+		PFR28_04705	0.16	+1.5
5,364,158	+		PFR28_04705	0.16	-1.4
5,364,158	+		PFR28_04705	0.16	+0.8
5,364,159	-		PFR28_04705	0.16	+0.4
5,364,159	-		PFR28_04705	0.16	+0.0
5,364,159	-		PFR28_04705	0.16	+0.7
5,364,159	-		PFR28_04705	0.16	+0.4
5,364,159	-		PFR28_04705	0.16	+0.9
5,364,159	-		PFR28_04705	0.16	-0.5
5,364,159	-		PFR28_04705	0.16	-0.4
5,364,159	-		PFR28_04705	0.16	+0.5
5,364,159	-		PFR28_04705	0.16	-0.6
5,364,159	-		PFR28_04705	0.16	+0.0
5,364,200	+		PFR28_04705	0.20	+0.2
5,364,200	+		PFR28_04705	0.20	-0.2
5,364,200	+		PFR28_04705	0.20	-0.6
5,364,218	+		PFR28_04705	0.22	+0.6
5,364,218	+		PFR28_04705	0.22	+0.5
5,364,218	+		PFR28_04705	0.22	+0.6
5,364,219	-		PFR28_04705	0.22	-0.8
5,364,219	-		PFR28_04705	0.22	+0.2
5,364,219	-		PFR28_04705	0.22	+0.1
5,364,219	-		PFR28_04705	0.22	+0.3
5,364,219	-		PFR28_04705	0.22	-0.4
5,364,219	-		PFR28_04705	0.22	-0.1
5,364,257	+		PFR28_04705	0.25	-0.4
5,364,257	+		PFR28_04705	0.25	+0.9
5,364,258	-		PFR28_04705	0.25	+0.0
5,364,258	-		PFR28_04705	0.25	-0.2
5,364,329	+		PFR28_04705	0.32	+0.1
5,364,329	+		PFR28_04705	0.32	-1.4
5,364,330	-		PFR28_04705	0.32	+0.2
5,364,330	-		PFR28_04705	0.32	+0.4
5,364,330	-		PFR28_04705	0.32	-0.6
5,364,330	-		PFR28_04705	0.32	+0.4
5,364,330	-		PFR28_04705	0.32	-0.1
5,364,499	+		PFR28_04705	0.49	-0.6
5,364,499	+		PFR28_04705	0.49	-0.3
5,364,499	+		PFR28_04705	0.49	+0.6
5,364,499	+		PFR28_04705	0.49	+0.6
5,364,500	-		PFR28_04705	0.49	+2.2
5,364,503	+		PFR28_04705	0.49	+0.6
5,364,503	+		PFR28_04705	0.49	-1.3
5,364,503	+		PFR28_04705	0.49	+0.4
5,364,503	+		PFR28_04705	0.49	+0.3
5,364,503	+		PFR28_04705	0.49	-1.7
5,364,503	+		PFR28_04705	0.49	+1.0
5,364,504	-		PFR28_04705	0.49	+0.1
5,364,504	-		PFR28_04705	0.49	-0.4
5,364,504	-		PFR28_04705	0.49	-0.6
5,364,504	-		PFR28_04705	0.49	+0.0
5,364,504	-		PFR28_04705	0.49	-0.3
5,364,504	-		PFR28_04705	0.49	+1.2
5,364,504	-		PFR28_04705	0.49	+0.2
5,364,504	-		PFR28_04705	0.49	-0.4
5,364,504	-		PFR28_04705	0.49	+0.0
5,364,619	+		PFR28_04705	0.61	-0.6
5,364,619	+		PFR28_04705	0.61	-0.3
5,364,619	+		PFR28_04705	0.61	-0.9
5,364,619	+		PFR28_04705	0.61	+0.1
5,364,620	-		PFR28_04705	0.61	-0.7
5,364,620	-		PFR28_04705	0.61	+0.1
5,364,620	-		PFR28_04705	0.61	+0.1
5,364,620	-		PFR28_04705	0.61	-0.3
5,364,620	-		PFR28_04705	0.61	-1.2
5,364,620	-		PFR28_04705	0.61	-0.2
5,364,620	-		PFR28_04705	0.61	+0.6
5,364,692	+		PFR28_04705	0.68	+0.3
5,364,692	+		PFR28_04705	0.68	+0.8
5,364,692	+		PFR28_04705	0.68	+0.0
5,364,692	+		PFR28_04705	0.68	+0.7
5,364,692	+		PFR28_04705	0.68	-0.1
5,364,692	+		PFR28_04705	0.68	-0.7
5,364,692	+		PFR28_04705	0.68	-0.0
5,364,692	+		PFR28_04705	0.68	-1.0
5,364,692	+		PFR28_04705	0.68	+0.1
5,364,693	-		PFR28_04705	0.68	-0.1
5,364,693	-		PFR28_04705	0.68	+0.7
5,364,693	-		PFR28_04705	0.68	+0.0
5,364,693	-		PFR28_04705	0.68	+1.0
5,364,696	-		PFR28_04705	0.68	+0.7
5,364,784	+		PFR28_04705	0.77	-0.5
5,364,784	+		PFR28_04705	0.77	+0.2
5,364,785	-		PFR28_04705	0.77	-1.0
5,364,785	-		PFR28_04705	0.77	-0.2
5,364,809	+		PFR28_04705	0.79	+0.6
5,364,809	+		PFR28_04705	0.79	+0.7
5,364,809	+		PFR28_04705	0.79	-0.3
5,364,810	-		PFR28_04705	0.79	-0.6
5,364,810	-		PFR28_04705	0.79	+0.2
5,364,810	-		PFR28_04705	0.79	+0.2
5,364,810	-		PFR28_04705	0.79	+1.5
5,364,810	-		PFR28_04705	0.79	-0.4
5,364,818	+		PFR28_04705	0.80	+0.2
5,364,818	+		PFR28_04705	0.80	+0.0
5,364,819	-		PFR28_04705	0.80	+1.3
5,364,819	-		PFR28_04705	0.80	+0.0
5,364,895	+		PFR28_04705	0.88	-0.4
5,364,895	+		PFR28_04705	0.88	+0.3
5,364,895	+		PFR28_04705	0.88	+0.0
5,364,895	+		PFR28_04705	0.88	+0.4
5,364,895	+		PFR28_04705	0.88	-0.3
5,364,895	+		PFR28_04705	0.88	+0.2
5,364,895	+		PFR28_04705	0.88	-0.2
5,364,895	+		PFR28_04705	0.88	+0.3
5,364,895	+		PFR28_04705	0.88	+0.2
5,364,896	-		PFR28_04705	0.88	+1.8
5,364,986	+				+1.5
5,364,986	+				+0.9
5,364,986	+				-0.0
5,364,986	+				+0.7
5,364,986	+				-0.4
5,364,986	+				-1.0
5,364,987	-				-0.7
5,364,987	-				-0.4
5,364,990	-				-0.2
5,365,064	-				-0.6
5,365,130	-				+2.8
5,365,153	+				+0.4
5,365,314	-		PFR28_04706	0.39	-1.5
5,365,314	-		PFR28_04706	0.39	-1.1
5,365,356	-		PFR28_04706	0.49	-0.4
5,365,508	+		PFR28_04706	0.86	-1.2
5,365,508	+		PFR28_04706	0.86	-0.8
5,365,509	-		PFR28_04706	0.86	-0.6
5,365,509	-		PFR28_04706	0.86	+0.9
5,365,530	+				+1.4
5,365,530	+				+0.6
5,365,540	+				-1.0
5,365,541	-				-0.0
5,365,612	-				+0.6
5,365,651	+				+0.5
5,365,651	+				+0.2
5,365,652	-				-0.8
5,365,652	-				+0.4
5,365,652	-				-0.1
5,365,652	-				-1.1
5,365,677	+				-0.4
5,365,677	+				-0.4
5,365,677	+				+1.4
5,365,678	-				+0.2
5,365,678	-				-0.7
5,365,678	-				-0.7
5,365,678	-				-0.3
5,365,761	+				-1.7
5,365,761	+				-0.2
5,365,761	+				+0.1
5,365,761	+				-0.5
5,365,761	+				-1.2
5,365,761	+				+0.3
5,365,761	+				+0.3
5,365,761	+				+0.8
5,365,761	+				+0.0
5,365,761	+				+0.7
5,365,761	+				+0.4
5,365,762	-				-0.7
5,365,762	-				-0.3
5,365,762	-				-0.8
5,365,762	-				-0.2
5,365,762	-				-0.3
5,365,770	-				+1.0