Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18430 and LRK53_RS18435 are separated by 563 nucleotides LRK53_RS18435 and LRK53_RS18440 are separated by 262 nucleotides LRK53_RS18440 and LRK53_RS18445 are separated by 127 nucleotides
LRK53_RS18430: LRK53_RS18430 - hypothetical protein, at 60,479 to 61,420
_RS18430
LRK53_RS18435: LRK53_RS18435 - replicative DNA helicase, at 61,984 to 63,387
_RS18435
LRK53_RS18440: LRK53_RS18440 - hypothetical protein, at 63,650 to 64,222
_RS18440
LRK53_RS18445: LRK53_RS18445 - hypothetical protein, at 64,350 to 64,673
_RS18445
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.076 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.524 kb on - strand at 61.524 kb on - strand at 61.524 kb on - strand at 61.595 kb on - strand at 61.652 kb on + strand at 61.652 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.665 kb on - strand at 61.665 kb on - strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.721 kb on - strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.832 kb on - strand at 61.832 kb on - strand at 62.017 kb on + strand at 62.018 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.115 kb on + strand at 62.149 kb on + strand, within LRK53_RS18435 at 62.278 kb on + strand, within LRK53_RS18435 at 62.278 kb on + strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.413 kb on + strand, within LRK53_RS18435 at 62.414 kb on - strand, within LRK53_RS18435 at 62.989 kb on + strand, within LRK53_RS18435 at 62.990 kb on - strand, within LRK53_RS18435 at 62.990 kb on - strand, within LRK53_RS18435 at 63.214 kb on + strand, within LRK53_RS18435 at 63.226 kb on + strand, within LRK53_RS18435 at 63.226 kb on + strand, within LRK53_RS18435 at 63.226 kb on + strand, within LRK53_RS18435 at 63.226 kb on + strand, within LRK53_RS18435 at 63.227 kb on - strand, within LRK53_RS18435 at 63.227 kb on - strand, within LRK53_RS18435 at 63.229 kb on + strand, within LRK53_RS18435 at 63.229 kb on + strand, within LRK53_RS18435 at 63.229 kb on + strand, within LRK53_RS18435 at 63.229 kb on + strand, within LRK53_RS18435 at 63.229 kb on + strand, within LRK53_RS18435 at 63.229 kb on + strand, within LRK53_RS18435 at 63.230 kb on - strand, within LRK53_RS18435 at 63.230 kb on - strand, within LRK53_RS18435 at 63.230 kb on - strand, within LRK53_RS18435 at 63.230 kb on - strand, within LRK53_RS18435 at 63.230 kb on - strand, within LRK53_RS18435 at 63.230 kb on - strand, within LRK53_RS18435 at 63.230 kb on - strand, within LRK53_RS18435 at 63.328 kb on + strand at 63.328 kb on + strand at 63.328 kb on + strand at 63.328 kb on + strand at 63.328 kb on + strand at 63.328 kb on + strand at 63.328 kb on + strand at 63.328 kb on + strand at 63.328 kb on + strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.329 kb on - strand at 63.461 kb on + strand at 63.461 kb on + strand at 63.461 kb on + strand at 63.461 kb on + strand at 63.462 kb on - strand at 63.493 kb on + strand at 63.523 kb on + strand at 63.523 kb on + strand at 63.596 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.681 kb on - strand at 63.681 kb on - strand at 63.681 kb on - strand at 63.681 kb on - strand at 63.908 kb on + strand, within LRK53_RS18440 at 63.908 kb on + strand, within LRK53_RS18440 at 63.908 kb on + strand, within LRK53_RS18440 at 63.908 kb on + strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.920 kb on + strand, within LRK53_RS18440 at 63.920 kb on + strand, within LRK53_RS18440 at 63.921 kb on - strand, within LRK53_RS18440 at 63.921 kb on - strand, within LRK53_RS18440 at 64.058 kb on + strand, within LRK53_RS18440 at 64.094 kb on + strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.254 kb on - strand at 64.290 kb on - strand at 64.364 kb on - strand at 64.366 kb on + strand at 64.366 kb on + strand at 64.366 kb on + strand at 64.367 kb on - strand at 64.367 kb on - strand at 64.367 kb on - strand at 64.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 61,076 + LRK53_RS18430 0.63 -0.4 61,206 + LRK53_RS18430 0.77 +0.2 61,206 + LRK53_RS18430 0.77 +1.0 61,250 + LRK53_RS18430 0.82 -1.3 61,250 + LRK53_RS18430 0.82 +0.3 61,251 - LRK53_RS18430 0.82 -0.4 61,251 - LRK53_RS18430 0.82 +1.0 61,251 - LRK53_RS18430 0.82 -0.6 61,523 + -0.0 61,523 + -1.6 61,523 + +1.6 61,523 + +0.4 61,523 + +1.0 61,524 - -0.6 61,524 - +2.0 61,524 - -0.1 61,595 - -1.3 61,652 + -0.9 61,652 + +0.6 61,664 + -0.9 61,664 + -0.9 61,664 + +0.6 61,664 + +1.3 61,665 - -1.8 61,665 - -1.3 61,720 + -0.3 61,720 + +3.3 61,720 + -0.1 61,720 + +1.7 61,720 + -0.5 61,721 - -0.0 61,741 + -1.8 61,741 + -2.3 61,741 + +0.8 61,741 + +1.0 61,741 + -0.1 61,741 + -1.0 61,741 + +0.3 61,742 - -2.3 61,742 - -0.7 61,742 - +0.5 61,742 - -2.5 61,742 - -0.6 61,742 - -1.2 61,742 - -0.1 61,742 - -1.2 61,742 - -1.7 61,742 - -2.5 61,742 - +1.6 61,742 - -2.5 61,742 - -1.2 61,742 - +0.1 61,832 - -0.0 61,832 - +0.3 62,017 + +0.4 62,018 - +0.3 62,053 - -1.1 62,053 - -0.9 62,053 - -0.3 62,053 - +0.1 62,115 + -0.0 62,149 + LRK53_RS18435 0.12 -1.0 62,278 + LRK53_RS18435 0.21 -2.3 62,278 + LRK53_RS18435 0.21 -0.3 62,279 - LRK53_RS18435 0.21 +0.3 62,279 - LRK53_RS18435 0.21 -1.0 62,279 - LRK53_RS18435 0.21 -0.4 62,279 - LRK53_RS18435 0.21 -1.0 62,413 + LRK53_RS18435 0.31 -0.2 62,414 - LRK53_RS18435 0.31 +0.4 62,989 + LRK53_RS18435 0.72 -2.0 62,990 - LRK53_RS18435 0.72 -0.7 62,990 - LRK53_RS18435 0.72 -0.6 63,214 + LRK53_RS18435 0.88 -1.0 63,226 + LRK53_RS18435 0.88 +0.4 63,226 + LRK53_RS18435 0.88 +1.0 63,226 + LRK53_RS18435 0.88 +0.4 63,226 + LRK53_RS18435 0.88 -0.8 63,227 - LRK53_RS18435 0.89 -0.0 63,227 - LRK53_RS18435 0.89 +0.8 63,229 + LRK53_RS18435 0.89 -0.1 63,229 + LRK53_RS18435 0.89 +0.7 63,229 + LRK53_RS18435 0.89 -0.6 63,229 + LRK53_RS18435 0.89 -1.0 63,229 + LRK53_RS18435 0.89 -1.0 63,229 + LRK53_RS18435 0.89 -1.5 63,230 - LRK53_RS18435 0.89 -2.5 63,230 - LRK53_RS18435 0.89 -0.1 63,230 - LRK53_RS18435 0.89 -0.0 63,230 - LRK53_RS18435 0.89 -0.6 63,230 - LRK53_RS18435 0.89 +0.4 63,230 - LRK53_RS18435 0.89 -1.3 63,230 - LRK53_RS18435 0.89 +0.3 63,328 + -1.4 63,328 + +2.3 63,328 + +3.0 63,328 + -0.3 63,328 + -0.4 63,328 + -0.6 63,328 + -1.0 63,328 + -0.6 63,328 + -0.9 63,329 - +0.5 63,329 - -2.0 63,329 - -0.1 63,329 - +2.0 63,329 - -0.7 63,329 - -1.1 63,329 - +2.0 63,329 - -0.7 63,329 - +0.6 63,329 - -0.4 63,329 - -0.0 63,329 - +1.0 63,329 - -0.7 63,329 - +0.1 63,329 - -2.0 63,329 - -0.8 63,461 + -1.8 63,461 + -1.1 63,461 + -2.3 63,461 + -0.6 63,462 - +1.0 63,493 + +0.5 63,523 + +1.0 63,523 + +0.4 63,596 + +1.0 63,678 + -1.0 63,678 + -0.4 63,678 + -1.3 63,678 + -0.0 63,678 + -0.4 63,678 + +0.8 63,678 + +1.0 63,678 + -1.4 63,678 + -0.5 63,678 + -0.3 63,678 + -0.6 63,679 - +0.5 63,679 - +0.7 63,679 - +0.4 63,679 - +0.3 63,679 - -0.4 63,679 - +1.0 63,679 - +0.4 63,679 - -0.7 63,679 - -1.6 63,680 + +0.1 63,680 + +0.1 63,680 + +0.4 63,680 + -1.8 63,680 + -0.7 63,680 + +1.8 63,680 + +1.2 63,680 + -0.2 63,680 + -1.2 63,681 - -0.0 63,681 - -0.7 63,681 - +0.3 63,681 - +1.0 63,908 + LRK53_RS18440 0.45 -0.8 63,908 + LRK53_RS18440 0.45 -1.0 63,908 + LRK53_RS18440 0.45 -0.0 63,908 + LRK53_RS18440 0.45 -2.2 63,909 - LRK53_RS18440 0.45 +0.1 63,909 - LRK53_RS18440 0.45 +0.5 63,909 - LRK53_RS18440 0.45 -0.6 63,909 - LRK53_RS18440 0.45 -0.0 63,920 + LRK53_RS18440 0.47 -0.4 63,920 + LRK53_RS18440 0.47 -2.5 63,921 - LRK53_RS18440 0.47 +1.0 63,921 - LRK53_RS18440 0.47 -1.3 64,058 + LRK53_RS18440 0.71 -0.4 64,094 + LRK53_RS18440 0.77 -2.3 64,095 - LRK53_RS18440 0.78 -1.9 64,095 - LRK53_RS18440 0.78 -2.9 64,095 - LRK53_RS18440 0.78 -0.0 64,095 - LRK53_RS18440 0.78 +0.3 64,254 - -1.3 64,290 - -1.8 64,364 - -0.2 64,366 + -0.2 64,366 + -1.0 64,366 + +0.4 64,367 - +0.2 64,367 - -1.9 64,367 - -1.0 64,367 - -0.8
Or see this region's nucleotide sequence