Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00510

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00505 and LRK53_RS00510 overlap by 4 nucleotidesLRK53_RS00510 and LRK53_RS00515 are separated by 24 nucleotides LRK53_RS00505: LRK53_RS00505 - amidohydrolase family protein, at 110,412 to 111,647 _RS00505 LRK53_RS00510: LRK53_RS00510 - class I SAM-dependent methyltransferase, at 111,644 to 112,342 _RS00510 LRK53_RS00515: LRK53_RS00515 - B12-binding domain-containing radical SAM protein, at 112,367 to 113,875 _RS00515 Position (kb) 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 110.655 kb on + strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.862 kb on + strand, within LRK53_RS00505at 110.863 kb on - strand, within LRK53_RS00505at 110.863 kb on - strand, within LRK53_RS00505at 111.639 kb on + strandat 111.818 kb on + strand, within LRK53_RS00510at 111.818 kb on + strand, within LRK53_RS00510at 111.818 kb on + strand, within LRK53_RS00510at 111.818 kb on + strand, within LRK53_RS00510at 111.819 kb on - strand, within LRK53_RS00510at 111.819 kb on - strand, within LRK53_RS00510at 111.991 kb on + strand, within LRK53_RS00510at 111.991 kb on + strand, within LRK53_RS00510at 111.992 kb on - strand, within LRK53_RS00510at 111.992 kb on - strand, within LRK53_RS00510at 112.154 kb on + strand, within LRK53_RS00510at 112.154 kb on + strand, within LRK53_RS00510at 112.155 kb on - strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.317 kb on + strandat 112.317 kb on + strandat 112.317 kb on + strandat 112.318 kb on - strandat 112.318 kb on - strandat 112.318 kb on - strandat 112.661 kb on + strand, within LRK53_RS00515at 112.662 kb on - strand, within LRK53_RS00515at 112.703 kb on + strand, within LRK53_RS00515at 112.703 kb on + strand, within LRK53_RS00515at 112.703 kb on + strand, within LRK53_RS00515at 112.703 kb on + strand, within LRK53_RS00515at 112.704 kb on - strand, within LRK53_RS00515at 112.712 kb on + strand, within LRK53_RS00515at 112.883 kb on + strand, within LRK53_RS00515at 112.883 kb on + strand, within LRK53_RS00515at 112.883 kb on + strand, within LRK53_RS00515at 112.884 kb on - strand, within LRK53_RS00515at 112.910 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.974 kb on - strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.061 kb on - strand, within LRK53_RS00515at 113.061 kb on - strand, within LRK53_RS00515at 113.096 kb on + strand, within LRK53_RS00515at 113.096 kb on + strand, within LRK53_RS00515at 113.096 kb on + strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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110,655 + LRK53_RS00505 0.20 -1.2
110,656 - LRK53_RS00505 0.20 +0.3
110,656 - LRK53_RS00505 0.20 +2.2
110,656 - LRK53_RS00505 0.20 -0.4
110,656 - LRK53_RS00505 0.20 -0.9
110,656 - LRK53_RS00505 0.20 -0.4
110,656 - LRK53_RS00505 0.20 -1.0
110,656 - LRK53_RS00505 0.20 +1.0
110,656 - LRK53_RS00505 0.20 +0.3
110,656 - LRK53_RS00505 0.20 -2.3
110,862 + LRK53_RS00505 0.36 -0.6
110,863 - LRK53_RS00505 0.36 -0.1
110,863 - LRK53_RS00505 0.36 -0.9
111,639 + +0.0
111,818 + LRK53_RS00510 0.25 +1.0
111,818 + LRK53_RS00510 0.25 -0.1
111,818 + LRK53_RS00510 0.25 +0.2
111,818 + LRK53_RS00510 0.25 +0.8
111,819 - LRK53_RS00510 0.25 -0.6
111,819 - LRK53_RS00510 0.25 -2.3
111,991 + LRK53_RS00510 0.50 -0.6
111,991 + LRK53_RS00510 0.50 +0.0
111,992 - LRK53_RS00510 0.50 -0.2
111,992 - LRK53_RS00510 0.50 +1.9
112,154 + LRK53_RS00510 0.73 -0.6
112,154 + LRK53_RS00510 0.73 +2.2
112,155 - LRK53_RS00510 0.73 +0.3
112,181 + LRK53_RS00510 0.77 +0.0
112,181 + LRK53_RS00510 0.77 +0.0
112,181 + LRK53_RS00510 0.77 +0.0
112,181 + LRK53_RS00510 0.77 -0.0
112,182 - LRK53_RS00510 0.77 +0.3
112,182 - LRK53_RS00510 0.77 +1.0
112,182 - LRK53_RS00510 0.77 -0.7
112,182 - LRK53_RS00510 0.77 -1.4
112,182 - LRK53_RS00510 0.77 -2.3
112,182 - LRK53_RS00510 0.77 +0.5
112,182 - LRK53_RS00510 0.77 +0.0
112,317 + -0.6
112,317 + -2.0
112,317 + -1.8
112,318 - -1.0
112,318 - -0.7
112,318 - -1.8
112,661 + LRK53_RS00515 0.19 +1.0
112,662 - LRK53_RS00515 0.20 -1.4
112,703 + LRK53_RS00515 0.22 -0.9
112,703 + LRK53_RS00515 0.22 -1.0
112,703 + LRK53_RS00515 0.22 +0.0
112,703 + LRK53_RS00515 0.22 -0.1
112,704 - LRK53_RS00515 0.22 +0.8
112,712 + LRK53_RS00515 0.23 +0.6
112,883 + LRK53_RS00515 0.34 +3.0
112,883 + LRK53_RS00515 0.34 -0.6
112,883 + LRK53_RS00515 0.34 -2.4
112,884 - LRK53_RS00515 0.34 +0.2
112,910 + LRK53_RS00515 0.36 -2.4
112,925 + LRK53_RS00515 0.37 +0.3
112,925 + LRK53_RS00515 0.37 -1.3
112,925 + LRK53_RS00515 0.37 -2.9
112,925 + LRK53_RS00515 0.37 +2.6
112,925 + LRK53_RS00515 0.37 -1.0
112,925 + LRK53_RS00515 0.37 -1.1
112,925 + LRK53_RS00515 0.37 -0.4
112,926 - LRK53_RS00515 0.37 -0.1
112,926 - LRK53_RS00515 0.37 -1.2
112,926 - LRK53_RS00515 0.37 +1.6
112,926 - LRK53_RS00515 0.37 -0.0
112,926 - LRK53_RS00515 0.37 -1.3
112,926 - LRK53_RS00515 0.37 -0.9
112,926 - LRK53_RS00515 0.37 -0.3
112,974 - LRK53_RS00515 0.40 -0.6
113,060 + LRK53_RS00515 0.46 -0.6
113,060 + LRK53_RS00515 0.46 -0.3
113,060 + LRK53_RS00515 0.46 -0.6
113,060 + LRK53_RS00515 0.46 +1.4
113,060 + LRK53_RS00515 0.46 -0.8
113,060 + LRK53_RS00515 0.46 +1.0
113,060 + LRK53_RS00515 0.46 +1.0
113,060 + LRK53_RS00515 0.46 -0.6
113,061 - LRK53_RS00515 0.46 -1.6
113,061 - LRK53_RS00515 0.46 -1.1
113,096 + LRK53_RS00515 0.48 -1.5
113,096 + LRK53_RS00515 0.48 +0.9
113,096 + LRK53_RS00515 0.48 -1.3
113,097 - LRK53_RS00515 0.48 -0.4
113,097 - LRK53_RS00515 0.48 +1.0
113,097 - LRK53_RS00515 0.48 +0.0
113,097 - LRK53_RS00515 0.48 -0.9
113,261 + LRK53_RS00515 0.59 +1.0
113,261 + LRK53_RS00515 0.59 +1.0
113,261 + LRK53_RS00515 0.59 +1.0
113,261 + LRK53_RS00515 0.59 -0.3
113,261 + LRK53_RS00515 0.59 +0.3
113,262 - LRK53_RS00515 0.59 +1.0
113,262 - LRK53_RS00515 0.59 +0.6
113,262 - LRK53_RS00515 0.59 +0.2
113,262 - LRK53_RS00515 0.59 +0.2
113,262 - LRK53_RS00515 0.59 +0.8

Or see this region's nucleotide sequence