Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18685 and LRK53_RS18690 are separated by 54 nucleotides LRK53_RS18690 and LRK53_RS18695 are separated by 84 nucleotides LRK53_RS18695 and LRK53_RS18700 are separated by 97 nucleotides
LRK53_RS18685: LRK53_RS18685 - error-prone DNA polymerase, at 123,100 to 126,165
_RS18685
LRK53_RS18690: LRK53_RS18690 - hypothetical protein, at 126,220 to 126,939
_RS18690
LRK53_RS18695: LRK53_RS18695 - hypothetical protein, at 127,024 to 127,788
_RS18695
LRK53_RS18700: LRK53_RS18700 - H-NS histone family protein, at 127,886 to 128,320
_RS18700
Position (kb) 126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 125.287 kb on + strand, within LRK53_RS18685 at 125.287 kb on + strand, within LRK53_RS18685 at 125.287 kb on + strand, within LRK53_RS18685 at 125.287 kb on + strand, within LRK53_RS18685 at 125.288 kb on - strand, within LRK53_RS18685 at 125.288 kb on - strand, within LRK53_RS18685 at 125.299 kb on + strand, within LRK53_RS18685 at 125.299 kb on + strand, within LRK53_RS18685 at 125.299 kb on + strand, within LRK53_RS18685 at 125.300 kb on - strand, within LRK53_RS18685 at 125.365 kb on + strand, within LRK53_RS18685 at 125.365 kb on + strand, within LRK53_RS18685 at 125.366 kb on - strand, within LRK53_RS18685 at 125.366 kb on - strand, within LRK53_RS18685 at 125.366 kb on - strand, within LRK53_RS18685 at 125.366 kb on - strand, within LRK53_RS18685 at 125.456 kb on + strand, within LRK53_RS18685 at 125.484 kb on - strand, within LRK53_RS18685 at 125.484 kb on - strand, within LRK53_RS18685 at 125.514 kb on - strand, within LRK53_RS18685 at 125.855 kb on - strand, within LRK53_RS18685 at 125.855 kb on - strand, within LRK53_RS18685 at 126.175 kb on + strand at 126.176 kb on - strand at 126.221 kb on + strand at 126.221 kb on + strand at 126.221 kb on + strand at 126.221 kb on + strand at 126.222 kb on - strand at 126.222 kb on - strand at 126.222 kb on - strand at 126.222 kb on - strand at 126.222 kb on - strand at 126.464 kb on + strand, within LRK53_RS18690 at 126.465 kb on - strand, within LRK53_RS18690 at 126.482 kb on - strand, within LRK53_RS18690 at 126.482 kb on - strand, within LRK53_RS18690 at 126.496 kb on + strand, within LRK53_RS18690 at 126.497 kb on - strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.529 kb on + strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.530 kb on - strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.533 kb on + strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.534 kb on - strand, within LRK53_RS18690 at 126.551 kb on + strand, within LRK53_RS18690 at 126.551 kb on + strand, within LRK53_RS18690 at 126.551 kb on + strand, within LRK53_RS18690 at 126.551 kb on + strand, within LRK53_RS18690 at 126.551 kb on + strand, within LRK53_RS18690 at 126.552 kb on - strand, within LRK53_RS18690 at 126.552 kb on - strand, within LRK53_RS18690 at 126.552 kb on - strand, within LRK53_RS18690 at 126.552 kb on - strand, within LRK53_RS18690 at 126.833 kb on + strand, within LRK53_RS18690 at 126.833 kb on + strand, within LRK53_RS18690 at 126.834 kb on - strand, within LRK53_RS18690 at 126.834 kb on - strand, within LRK53_RS18690 at 126.837 kb on + strand, within LRK53_RS18690 at 126.837 kb on + strand, within LRK53_RS18690 at 126.837 kb on + strand, within LRK53_RS18690 at 126.838 kb on - strand, within LRK53_RS18690 at 126.838 kb on - strand, within LRK53_RS18690 at 126.838 kb on - strand, within LRK53_RS18690 at 126.838 kb on - strand, within LRK53_RS18690 at 126.838 kb on - strand, within LRK53_RS18690 at 126.838 kb on - strand, within LRK53_RS18690 at 126.915 kb on + strand at 126.915 kb on + strand at 126.916 kb on - strand at 126.916 kb on - strand at 126.916 kb on - strand at 126.916 kb on - strand at 127.126 kb on + strand, within LRK53_RS18695 at 127.126 kb on + strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.200 kb on - strand, within LRK53_RS18695 at 127.274 kb on + strand, within LRK53_RS18695 at 127.274 kb on + strand, within LRK53_RS18695 at 127.274 kb on + strand, within LRK53_RS18695 at 127.275 kb on - strand, within LRK53_RS18695 at 127.275 kb on - strand, within LRK53_RS18695 at 127.275 kb on - strand, within LRK53_RS18695 at 127.523 kb on + strand, within LRK53_RS18695 at 127.523 kb on + strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.635 kb on + strand, within LRK53_RS18695 at 127.636 kb on - strand, within LRK53_RS18695 at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.821 kb on + strand at 127.826 kb on + strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.830 kb on - strand at 127.880 kb on + strand at 127.880 kb on + strand at 127.881 kb on - strand at 127.881 kb on - strand at 127.936 kb on - strand, within LRK53_RS18700 at 127.936 kb on - strand, within LRK53_RS18700
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 125,287 + LRK53_RS18685 0.71 +1.2 125,287 + LRK53_RS18685 0.71 -0.4 125,287 + LRK53_RS18685 0.71 -0.7 125,287 + LRK53_RS18685 0.71 -0.6 125,288 - LRK53_RS18685 0.71 +0.2 125,288 - LRK53_RS18685 0.71 -1.2 125,299 + LRK53_RS18685 0.72 -0.4 125,299 + LRK53_RS18685 0.72 -2.6 125,299 + LRK53_RS18685 0.72 +0.6 125,300 - LRK53_RS18685 0.72 +0.2 125,365 + LRK53_RS18685 0.74 -2.9 125,365 + LRK53_RS18685 0.74 +0.2 125,366 - LRK53_RS18685 0.74 -0.4 125,366 - LRK53_RS18685 0.74 -1.3 125,366 - LRK53_RS18685 0.74 +0.2 125,366 - LRK53_RS18685 0.74 -1.1 125,456 + LRK53_RS18685 0.77 +0.2 125,484 - LRK53_RS18685 0.78 -0.5 125,484 - LRK53_RS18685 0.78 -1.1 125,514 - LRK53_RS18685 0.79 +1.2 125,855 - LRK53_RS18685 0.90 -1.5 125,855 - LRK53_RS18685 0.90 +0.9 126,175 + -1.8 126,176 - -2.4 126,221 + -0.9 126,221 + -0.4 126,221 + -1.4 126,221 + +0.1 126,222 - +0.2 126,222 - -0.9 126,222 - -1.6 126,222 - +0.2 126,222 - -0.1 126,464 + LRK53_RS18690 0.34 -1.1 126,465 - LRK53_RS18690 0.34 -0.4 126,482 - LRK53_RS18690 0.36 -0.9 126,482 - LRK53_RS18690 0.36 +0.2 126,496 + LRK53_RS18690 0.38 -0.8 126,497 - LRK53_RS18690 0.38 +0.4 126,529 + LRK53_RS18690 0.43 -0.9 126,529 + LRK53_RS18690 0.43 +0.2 126,529 + LRK53_RS18690 0.43 -0.1 126,529 + LRK53_RS18690 0.43 -0.2 126,529 + LRK53_RS18690 0.43 +0.6 126,529 + LRK53_RS18690 0.43 -0.9 126,529 + LRK53_RS18690 0.43 -0.4 126,529 + LRK53_RS18690 0.43 +0.0 126,529 + LRK53_RS18690 0.43 -1.5 126,530 - LRK53_RS18690 0.43 +0.7 126,530 - LRK53_RS18690 0.43 -1.6 126,530 - LRK53_RS18690 0.43 -0.5 126,530 - LRK53_RS18690 0.43 -1.5 126,530 - LRK53_RS18690 0.43 -0.8 126,530 - LRK53_RS18690 0.43 -0.9 126,530 - LRK53_RS18690 0.43 -0.4 126,530 - LRK53_RS18690 0.43 -2.0 126,530 - LRK53_RS18690 0.43 +0.2 126,530 - LRK53_RS18690 0.43 +1.5 126,530 - LRK53_RS18690 0.43 -0.2 126,530 - LRK53_RS18690 0.43 +2.0 126,533 + LRK53_RS18690 0.43 +0.2 126,533 + LRK53_RS18690 0.43 -0.4 126,533 + LRK53_RS18690 0.43 +0.8 126,533 + LRK53_RS18690 0.43 -3.4 126,533 + LRK53_RS18690 0.43 -0.8 126,533 + LRK53_RS18690 0.43 -1.5 126,533 + LRK53_RS18690 0.43 -1.9 126,533 + LRK53_RS18690 0.43 +0.8 126,533 + LRK53_RS18690 0.43 +1.2 126,533 + LRK53_RS18690 0.43 -2.5 126,533 + LRK53_RS18690 0.43 -1.2 126,533 + LRK53_RS18690 0.43 -0.5 126,533 + LRK53_RS18690 0.43 -0.6 126,533 + LRK53_RS18690 0.43 +0.2 126,534 - LRK53_RS18690 0.44 -0.4 126,534 - LRK53_RS18690 0.44 -0.5 126,534 - LRK53_RS18690 0.44 +0.3 126,534 - LRK53_RS18690 0.44 +0.2 126,534 - LRK53_RS18690 0.44 -1.7 126,534 - LRK53_RS18690 0.44 +0.2 126,534 - LRK53_RS18690 0.44 +1.2 126,534 - LRK53_RS18690 0.44 -1.1 126,534 - LRK53_RS18690 0.44 +3.2 126,534 - LRK53_RS18690 0.44 +0.1 126,534 - LRK53_RS18690 0.44 -0.2 126,534 - LRK53_RS18690 0.44 -3.4 126,534 - LRK53_RS18690 0.44 -0.9 126,534 - LRK53_RS18690 0.44 -1.1 126,551 + LRK53_RS18690 0.46 -0.2 126,551 + LRK53_RS18690 0.46 -0.4 126,551 + LRK53_RS18690 0.46 +0.2 126,551 + LRK53_RS18690 0.46 +0.2 126,551 + LRK53_RS18690 0.46 -0.4 126,552 - LRK53_RS18690 0.46 -1.9 126,552 - LRK53_RS18690 0.46 +0.6 126,552 - LRK53_RS18690 0.46 +1.2 126,552 - LRK53_RS18690 0.46 +1.2 126,833 + LRK53_RS18690 0.85 -0.5 126,833 + LRK53_RS18690 0.85 +1.2 126,834 - LRK53_RS18690 0.85 -2.5 126,834 - LRK53_RS18690 0.85 -1.6 126,837 + LRK53_RS18690 0.86 +0.1 126,837 + LRK53_RS18690 0.86 +0.6 126,837 + LRK53_RS18690 0.86 -0.1 126,838 - LRK53_RS18690 0.86 +0.3 126,838 - LRK53_RS18690 0.86 -2.0 126,838 - LRK53_RS18690 0.86 -2.1 126,838 - LRK53_RS18690 0.86 -1.5 126,838 - LRK53_RS18690 0.86 -2.6 126,838 - LRK53_RS18690 0.86 -0.8 126,915 + -2.1 126,915 + -0.6 126,916 - -0.5 126,916 - -0.4 126,916 - +1.6 126,916 - +0.6 127,126 + LRK53_RS18695 0.13 -1.4 127,126 + LRK53_RS18695 0.13 +2.2 127,127 - LRK53_RS18695 0.13 -0.2 127,127 - LRK53_RS18695 0.13 -0.6 127,127 - LRK53_RS18695 0.13 -0.9 127,127 - LRK53_RS18695 0.13 -1.4 127,127 - LRK53_RS18695 0.13 -0.5 127,147 + LRK53_RS18695 0.16 -0.2 127,147 + LRK53_RS18695 0.16 -1.2 127,147 + LRK53_RS18695 0.16 -0.6 127,147 + LRK53_RS18695 0.16 -0.5 127,147 + LRK53_RS18695 0.16 -0.2 127,148 - LRK53_RS18695 0.16 +0.2 127,148 - LRK53_RS18695 0.16 +0.4 127,148 - LRK53_RS18695 0.16 -0.2 127,148 - LRK53_RS18695 0.16 +0.8 127,148 - LRK53_RS18695 0.16 -0.2 127,148 - LRK53_RS18695 0.16 +1.2 127,199 + LRK53_RS18695 0.23 -0.7 127,199 + LRK53_RS18695 0.23 +0.1 127,199 + LRK53_RS18695 0.23 -0.8 127,199 + LRK53_RS18695 0.23 +0.6 127,199 + LRK53_RS18695 0.23 -2.0 127,200 - LRK53_RS18695 0.23 -0.8 127,274 + LRK53_RS18695 0.33 -1.8 127,274 + LRK53_RS18695 0.33 -0.5 127,274 + LRK53_RS18695 0.33 +1.5 127,275 - LRK53_RS18695 0.33 +0.1 127,275 - LRK53_RS18695 0.33 -0.8 127,275 - LRK53_RS18695 0.33 -0.9 127,523 + LRK53_RS18695 0.65 +1.8 127,523 + LRK53_RS18695 0.65 -0.2 127,524 - LRK53_RS18695 0.65 -0.1 127,524 - LRK53_RS18695 0.65 -0.5 127,635 + LRK53_RS18695 0.80 -0.8 127,636 - LRK53_RS18695 0.80 +0.2 127,788 + -0.6 127,788 + -2.6 127,788 + -1.3 127,788 + +1.2 127,788 + -1.6 127,788 + -0.3 127,788 + -0.1 127,788 + -1.4 127,788 + -1.1 127,788 + -0.4 127,788 + -0.1 127,788 + -1.2 127,788 + +0.6 127,788 + +0.6 127,788 + -0.8 127,789 - -0.4 127,789 - -0.1 127,789 - -0.2 127,789 - -0.4 127,789 - +0.4 127,789 - -1.9 127,789 - -0.4 127,789 - -1.8 127,789 - +0.5 127,789 - -1.6 127,789 - -0.5 127,789 - +0.2 127,789 - +0.5 127,789 - -0.3 127,789 - +0.2 127,789 - +0.6 127,789 - -0.4 127,821 + -0.1 127,826 + -0.4 127,827 - +0.2 127,827 - -1.5 127,827 - +0.2 127,827 - +0.6 127,827 - +0.2 127,830 - -0.4 127,880 + -0.5 127,880 + -0.1 127,881 - +0.5 127,881 - -1.4 127,936 - LRK53_RS18700 0.11 -0.2 127,936 - LRK53_RS18700 0.11 -0.3
Or see this region's nucleotide sequence