Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15440

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
3,373,458	+		LRK53_RS15430	0.89	-0.0
3,373,458	+		LRK53_RS15430	0.89	-0.6
3,373,458	+		LRK53_RS15430	0.89	+2.4
3,373,458	+		LRK53_RS15430	0.89	-1.1
3,373,458	+		LRK53_RS15430	0.89	-1.2
3,373,458	+		LRK53_RS15430	0.89	+0.7
3,373,458	+		LRK53_RS15430	0.89	+0.0
3,373,458	+		LRK53_RS15430	0.89	-0.7
3,373,458	+		LRK53_RS15430	0.89	-1.1
3,373,458	+		LRK53_RS15430	0.89	-0.3
3,373,458	+		LRK53_RS15430	0.89	+0.0
3,373,458	+		LRK53_RS15430	0.89	-1.9
3,373,459	-		LRK53_RS15430	0.89	-0.6
3,373,459	-		LRK53_RS15430	0.89	+0.4
3,373,459	-		LRK53_RS15430	0.89	-1.7
3,373,459	-		LRK53_RS15430	0.89	-0.4
3,373,459	-		LRK53_RS15430	0.89	+0.2
3,373,459	-		LRK53_RS15430	0.89	+0.4
3,373,459	-		LRK53_RS15430	0.89	-1.2
3,373,479	+				-0.6
3,373,479	+				+2.0
3,373,479	+				-0.8
3,373,479	+				+0.4
3,373,479	+				+0.1
3,373,480	-				+0.3
3,373,480	-				+0.9
3,373,739	+				+0.0
3,373,739	+				-0.4
3,373,739	+				+0.4
3,373,739	+				-1.8
3,373,739	+				+0.2
3,373,740	-				+0.8
3,373,740	-				-1.2
3,373,740	-				-1.1
3,373,740	-				-0.6
3,373,898	+		LRK53_RS15435	0.34	+1.4
3,373,950	+		LRK53_RS15435	0.43	-0.2
3,373,950	+		LRK53_RS15435	0.43	+0.0
3,373,950	+		LRK53_RS15435	0.43	-0.0
3,373,951	-		LRK53_RS15435	0.43	-0.9
3,373,951	-		LRK53_RS15435	0.43	+1.4
3,373,951	-		LRK53_RS15435	0.43	-0.9
3,373,951	-		LRK53_RS15435	0.43	-1.8
3,373,951	-		LRK53_RS15435	0.43	-0.8
3,373,951	-		LRK53_RS15435	0.43	-0.8
3,373,952	+		LRK53_RS15435	0.43	+0.1
3,373,952	+		LRK53_RS15435	0.43	+0.0
3,373,952	+		LRK53_RS15435	0.43	+0.1
3,373,953	-		LRK53_RS15435	0.43	-0.5
3,373,953	-		LRK53_RS15435	0.43	-1.3
3,373,953	-		LRK53_RS15435	0.43	-0.2
3,373,953	-		LRK53_RS15435	0.43	-0.5
3,373,953	-		LRK53_RS15435	0.43	-1.2
3,373,978	+		LRK53_RS15435	0.47	+2.4
3,373,978	+		LRK53_RS15435	0.47	+1.4
3,373,978	+		LRK53_RS15435	0.47	-0.2
3,373,979	-		LRK53_RS15435	0.47	-1.1
3,374,003	+		LRK53_RS15435	0.51	-1.6
3,374,161	-		LRK53_RS15435	0.76	-0.7
3,374,161	-		LRK53_RS15435	0.76	+1.4
3,374,180	+		LRK53_RS15435	0.79	-1.4
3,374,180	+		LRK53_RS15435	0.79	+2.4
3,374,180	+		LRK53_RS15435	0.79	+0.6
3,374,180	+		LRK53_RS15435	0.79	+0.4
3,374,180	+		LRK53_RS15435	0.79	-1.6
3,374,180	+		LRK53_RS15435	0.79	+0.0
3,374,181	-		LRK53_RS15435	0.80	+0.7
3,374,181	-		LRK53_RS15435	0.80	+0.0
3,374,181	-		LRK53_RS15435	0.80	-0.6
3,374,181	-		LRK53_RS15435	0.80	-0.8
3,374,181	-		LRK53_RS15435	0.80	-0.6
3,374,181	-		LRK53_RS15435	0.80	-1.2
3,374,181	-		LRK53_RS15435	0.80	-0.4
3,374,181	-		LRK53_RS15435	0.80	-0.2
3,374,181	-		LRK53_RS15435	0.80	+0.4
3,374,181	-		LRK53_RS15435	0.80	+2.1
3,374,181	-		LRK53_RS15435	0.80	-0.5
3,374,181	-		LRK53_RS15435	0.80	-2.3
3,374,181	-		LRK53_RS15435	0.80	-0.3
3,374,181	-		LRK53_RS15435	0.80	-0.4
3,374,421	+				-1.9
3,374,422	-				-0.2
3,374,422	-				+1.7
3,374,472	+				-0.6
3,374,473	-				+1.3
3,374,533	-		LRK53_RS15440	0.14	+0.2
3,374,533	-		LRK53_RS15440	0.14	-0.7
3,374,533	-		LRK53_RS15440	0.14	-0.2
3,374,533	-		LRK53_RS15440	0.14	-1.2
3,374,535	+		LRK53_RS15440	0.14	-1.1
3,374,536	-		LRK53_RS15440	0.14	-1.3
3,374,536	-		LRK53_RS15440	0.14	-0.9
3,374,536	-		LRK53_RS15440	0.14	-0.2
3,374,799	+		LRK53_RS15440	0.33	+0.5
3,374,799	+		LRK53_RS15440	0.33	-1.5
3,374,799	+		LRK53_RS15440	0.33	+0.8
3,374,799	+		LRK53_RS15440	0.33	-0.4
3,374,800	-		LRK53_RS15440	0.33	-1.2
3,374,800	-		LRK53_RS15440	0.33	-1.4
3,374,800	-		LRK53_RS15440	0.33	-0.9
3,374,800	-		LRK53_RS15440	0.33	+0.6
3,374,800	-		LRK53_RS15440	0.33	-1.0
3,374,800	-		LRK53_RS15440	0.33	+1.2
3,374,957	+		LRK53_RS15440	0.44	+0.7
3,374,957	+		LRK53_RS15440	0.44	-0.6
3,374,957	+		LRK53_RS15440	0.44	+0.4
3,374,958	-		LRK53_RS15440	0.44	+0.0
3,374,958	-		LRK53_RS15440	0.44	+3.7
3,374,958	-		LRK53_RS15440	0.44	+1.4
3,375,144	+		LRK53_RS15440	0.58	-1.1
3,375,144	+		LRK53_RS15440	0.58	+0.2
3,375,144	+		LRK53_RS15440	0.58	+0.4
3,375,144	+		LRK53_RS15440	0.58	+0.8
3,375,144	+		LRK53_RS15440	0.58	+1.4
3,375,144	+		LRK53_RS15440	0.58	-2.0
3,375,144	+		LRK53_RS15440	0.58	+2.9
3,375,144	+		LRK53_RS15440	0.58	+0.4
3,375,144	+		LRK53_RS15440	0.58	-0.7
3,375,144	+		LRK53_RS15440	0.58	+0.4
3,375,144	+		LRK53_RS15440	0.58	+1.3
3,375,144	+		LRK53_RS15440	0.58	-0.1
3,375,145	-		LRK53_RS15440	0.58	+2.9
3,375,145	-		LRK53_RS15440	0.58	+2.9
3,375,145	-		LRK53_RS15440	0.58	+1.4
3,375,145	-		LRK53_RS15440	0.58	-2.2
3,375,145	-		LRK53_RS15440	0.58	+0.4
3,375,145	-		LRK53_RS15440	0.58	-0.4
3,375,145	-		LRK53_RS15440	0.58	+1.2
3,375,145	-		LRK53_RS15440	0.58	-0.2
3,375,145	-		LRK53_RS15440	0.58	-0.8
3,375,145	-		LRK53_RS15440	0.58	-0.6
3,375,145	-		LRK53_RS15440	0.58	-2.2
3,375,213	+		LRK53_RS15440	0.63	+1.4
3,375,213	+		LRK53_RS15440	0.63	-0.8
3,375,214	-		LRK53_RS15440	0.63	-1.4
3,375,214	-		LRK53_RS15440	0.63	+1.4
3,375,214	-		LRK53_RS15440	0.63	+0.7
3,375,214	-		LRK53_RS15440	0.63	-0.8
3,375,214	-		LRK53_RS15440	0.63	+0.0
3,375,214	-		LRK53_RS15440	0.63	-1.1
3,375,372	+		LRK53_RS15440	0.74	+0.4
3,375,372	+		LRK53_RS15440	0.74	+0.2
3,375,372	+		LRK53_RS15440	0.74	+0.8
3,375,372	+		LRK53_RS15440	0.74	-1.0
3,375,372	+		LRK53_RS15440	0.74	-1.2
3,375,373	-		LRK53_RS15440	0.74	-0.8
3,375,373	-		LRK53_RS15440	0.74	-0.4
3,375,373	-		LRK53_RS15440	0.74	-0.4
3,375,373	-		LRK53_RS15440	0.74	-2.1
3,375,414	+		LRK53_RS15440	0.77	-0.5
3,375,415	-		LRK53_RS15440	0.77	+0.0
3,375,415	-		LRK53_RS15440	0.77	-1.6
3,375,432	+		LRK53_RS15440	0.78	-1.5
3,375,433	-		LRK53_RS15440	0.78	+0.2
3,375,435	+		LRK53_RS15440	0.78	-1.0
3,375,435	+		LRK53_RS15440	0.78	+1.9
3,375,435	+		LRK53_RS15440	0.78	-0.5
3,375,435	+		LRK53_RS15440	0.78	-0.0
3,375,435	+		LRK53_RS15440	0.78	-0.6
3,375,435	+		LRK53_RS15440	0.78	+0.4
3,375,435	+		LRK53_RS15440	0.78	+0.7
3,375,435	+		LRK53_RS15440	0.78	-1.3
3,375,435	+		LRK53_RS15440	0.78	+0.1
3,375,436	-		LRK53_RS15440	0.79	+0.4
3,375,436	-		LRK53_RS15440	0.79	+2.4
3,375,436	-		LRK53_RS15440	0.79	+1.4
3,375,436	-		LRK53_RS15440	0.79	+0.4
3,375,436	-		LRK53_RS15440	0.79	+0.6
3,375,436	-		LRK53_RS15440	0.79	+0.4
3,375,436	-		LRK53_RS15440	0.79	-1.8
3,375,436	-		LRK53_RS15440	0.79	-0.6
3,375,436	-		LRK53_RS15440	0.79	-0.6
3,375,436	-		LRK53_RS15440	0.79	+1.1
3,375,436	-		LRK53_RS15440	0.79	+1.4
3,375,436	-		LRK53_RS15440	0.79	+1.1
3,375,436	-		LRK53_RS15440	0.79	+1.2
3,375,436	-		LRK53_RS15440	0.79	-0.6
3,375,436	-		LRK53_RS15440	0.79	+0.4
3,375,436	-		LRK53_RS15440	0.79	+2.4
3,375,436	-		LRK53_RS15440	0.79	-2.2
3,375,445	+		LRK53_RS15440	0.79	+0.4
3,375,445	+		LRK53_RS15440	0.79	+0.8
3,375,446	-		LRK53_RS15440	0.79	-0.0
3,375,525	+		LRK53_RS15440	0.85	-0.4
3,375,525	+		LRK53_RS15440	0.85	-1.5
3,375,525	+		LRK53_RS15440	0.85	-0.8
3,375,525	+		LRK53_RS15440	0.85	-0.4
3,375,525	+		LRK53_RS15440	0.85	+0.8
3,375,525	+		LRK53_RS15440	0.85	+1.0
3,375,525	+		LRK53_RS15440	0.85	+0.1
3,375,525	+		LRK53_RS15440	0.85	-2.5
3,375,525	+		LRK53_RS15440	0.85	+0.6
3,375,525	+		LRK53_RS15440	0.85	+0.0
3,375,526	-		LRK53_RS15440	0.85	-1.5
3,375,526	-		LRK53_RS15440	0.85	-1.6
3,375,526	-		LRK53_RS15440	0.85	-0.6
3,375,526	-		LRK53_RS15440	0.85	+0.2
3,375,526	-		LRK53_RS15440	0.85	+2.9
3,375,526	-		LRK53_RS15440	0.85	-0.6
3,375,526	-		LRK53_RS15440	0.85	-1.2
3,375,526	-		LRK53_RS15440	0.85	-0.2
3,375,526	-		LRK53_RS15440	0.85	-2.0
3,375,526	-		LRK53_RS15440	0.85	+0.2
3,375,526	-		LRK53_RS15440	0.85	+0.9
3,375,526	-		LRK53_RS15440	0.85	+1.4
3,375,526	-		LRK53_RS15440	0.85	+0.6
3,375,526	-		LRK53_RS15440	0.85	+0.0
3,375,526	-		LRK53_RS15440	0.85	+0.4
3,375,526	-		LRK53_RS15440	0.85	-0.2
3,375,526	-		LRK53_RS15440	0.85	+2.4
3,375,526	-		LRK53_RS15440	0.85	+0.8
3,375,630	+				+1.8
3,375,631	-				-1.1
3,375,652	-				+0.8
3,375,725	+				-0.2
3,375,732	+				+1.4
3,375,732	+				-2.4
3,375,732	+				-0.1
3,375,732	+				+1.9
3,375,732	+				-1.0
3,375,732	+				-1.0
3,375,732	+				+1.6
3,375,732	+				-0.8
3,375,732	+				+1.4
3,375,732	+				-1.4
3,375,732	+				-1.4
3,375,732	+				+0.2
3,375,732	+				+1.2
3,375,732	+				+0.8
3,375,732	+				-0.7
3,375,732	+				+0.7
3,375,732	+				+0.6
3,375,732	+				-0.8
3,375,733	-				-2.0
3,375,733	-				+2.4
3,375,733	-				+0.5
3,375,733	-				-1.6
3,375,733	-				-0.2
3,375,733	-				-0.5
3,375,733	-				-1.0
3,375,733	-				-1.5
3,375,733	-				-0.3
3,375,733	-				+0.8
3,375,733	-				+0.8
3,375,733	-				-0.0
3,375,733	-				+0.6
3,375,733	-				+0.9
3,375,769	+				-1.4
3,375,769	+				-1.0
3,375,769	+				-1.4
3,375,769	+				-0.4
3,375,769	+				+1.4
3,375,769	+				+0.9
3,375,769	+				-1.0
3,375,769	+				+0.0
3,375,769	+				-0.1
3,375,769	+				-1.0
3,375,769	+				-1.7
3,375,770	-				+0.5
3,375,770	-				+0.9
3,375,770	-				+0.4
3,375,770	-				+1.1
3,375,770	-				-0.6
3,375,770	-				-1.6
3,375,770	-				-0.6
3,375,810	-				-0.5
3,375,810	-				-0.6
3,375,864	+				-3.6
3,376,026	+				+0.9
3,376,026	+				-0.8
3,376,026	+				-0.0
3,376,026	+				-0.3
3,376,026	+				+0.4
3,376,027	-				+0.1
3,376,027	-				-0.5
3,376,027	-				-0.4
3,376,027	-				+2.4
3,376,027	-				-0.8
3,376,027	-				-1.2
3,376,027	-				-0.9
3,376,027	-				-1.3
3,376,027	-				-1.0
3,376,141	+				+0.4
3,376,141	+				-1.5
3,376,142	-				-1.7
3,376,148	+				+0.4
3,376,148	+				-0.7
3,376,148	+				+0.1
3,376,148	+				-0.2
3,376,148	+				-2.0
3,376,148	+				-0.9
3,376,149	-				-2.2
3,376,169	+				-1.2
3,376,169	+				-1.9
3,376,169	+				-0.3
3,376,170	-				-1.1
3,376,170	-				-0.2
3,376,373	+		LRK53_RS15445	0.78	-0.6
3,376,373	+		LRK53_RS15445	0.78	-2.5
3,376,373	+		LRK53_RS15445	0.78	+0.1
3,376,373	+		LRK53_RS15445	0.78	-0.4
3,376,373	+		LRK53_RS15445	0.78	-0.9
3,376,373	+		LRK53_RS15445	0.78	-0.3
3,376,373	+		LRK53_RS15445	0.78	-1.5
3,376,373	+		LRK53_RS15445	0.78	-1.3
3,376,373	+		LRK53_RS15445	0.78	+2.4
3,376,373	+		LRK53_RS15445	0.78	+0.9
3,376,374	-		LRK53_RS15445	0.79	-1.6
3,376,374	-		LRK53_RS15445	0.79	-1.1
3,376,374	-		LRK53_RS15445	0.79	-1.3
3,376,374	-		LRK53_RS15445	0.79	-1.8
3,376,374	-		LRK53_RS15445	0.79	-1.8
3,376,374	-		LRK53_RS15445	0.79	+1.8
3,376,374	-		LRK53_RS15445	0.79	-0.6
3,376,374	-		LRK53_RS15445	0.79	-1.2
3,376,374	-		LRK53_RS15445	0.79	-1.4
3,376,374	-		LRK53_RS15445	0.79	+1.4
3,376,374	-		LRK53_RS15445	0.79	-1.8
3,376,374	-		LRK53_RS15445	0.79	-0.7
3,376,374	-		LRK53_RS15445	0.79	-1.0
3,376,374	-		LRK53_RS15445	0.79	-0.6
3,376,374	-		LRK53_RS15445	0.79	-1.1
3,376,374	-		LRK53_RS15445	0.79	-2.0
3,376,430	+				+0.7
3,376,431	-				-1.3
3,376,431	-				-0.4
3,376,703	+		LRK53_RS15450	0.27	+1.8
3,376,703	+		LRK53_RS15450	0.27	-0.2
3,376,703	+		LRK53_RS15450	0.27	-3.2
3,376,704	-		LRK53_RS15450	0.27	-0.4