Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15355

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
3,352,100	+				-1.4
3,352,101	-				+1.4
3,352,101	-				-0.4
3,352,101	-				+1.4
3,352,198	-				+0.7
3,352,281	+				+1.0
3,352,282	-				-0.0
3,352,341	-				-1.1
3,352,342	+				+0.0
3,352,342	+				-0.5
3,352,342	+				-1.0
3,352,342	+				+0.3
3,352,343	-				-0.5
3,352,343	-				-2.4
3,352,343	-				-0.6
3,352,413	+		LRK53_RS15350	0.14	-0.1
3,352,414	-		LRK53_RS15350	0.15	-1.3
3,352,435	-		LRK53_RS15350	0.18	-0.6
3,352,538	+		LRK53_RS15350	0.34	+0.6
3,352,538	+		LRK53_RS15350	0.34	-0.1
3,352,538	+		LRK53_RS15350	0.34	-0.4
3,352,538	+		LRK53_RS15350	0.34	+1.9
3,352,538	+		LRK53_RS15350	0.34	-1.0
3,352,539	-		LRK53_RS15350	0.34	+0.4
3,352,599	+		LRK53_RS15350	0.43	-1.4
3,352,599	+		LRK53_RS15350	0.43	-1.2
3,352,600	-		LRK53_RS15350	0.43	+1.4
3,352,600	-		LRK53_RS15350	0.43	-2.3
3,352,687	+		LRK53_RS15350	0.57	-0.5
3,352,753	+		LRK53_RS15350	0.67	+1.4
3,352,753	+		LRK53_RS15350	0.67	+0.8
3,352,753	+		LRK53_RS15350	0.67	-0.9
3,352,753	+		LRK53_RS15350	0.67	-0.8
3,352,754	-		LRK53_RS15350	0.67	+0.6
3,352,754	-		LRK53_RS15350	0.67	+0.4
3,352,889	+		LRK53_RS15350	0.88	+0.6
3,352,890	-		LRK53_RS15350	0.88	-1.6
3,352,912	+				+0.1
3,352,939	+				-0.4
3,352,939	+				-0.2
3,352,939	+				-1.0
3,352,939	+				+2.4
3,352,939	+				-0.8
3,352,939	+				-0.6
3,352,939	+				+0.1
3,352,940	-				-1.2
3,352,940	-				+0.4
3,352,940	-				-0.9
3,352,940	-				-0.2
3,352,940	-				+0.0
3,352,940	-				-0.6
3,352,940	-				+0.0
3,352,940	-				-1.2
3,352,940	-				-0.5
3,353,026	+				+0.6
3,353,026	+				+0.4
3,353,027	-				+0.5
3,353,027	-				+0.8
3,353,132	-				+2.1
3,353,186	-				-0.1
3,353,186	-				-0.5
3,353,186	-				-0.2
3,353,214	-		LRK53_RS15355	0.12	-1.0
3,353,326	+		LRK53_RS15355	0.21	-1.1
3,353,326	+		LRK53_RS15355	0.21	-0.6
3,353,326	+		LRK53_RS15355	0.21	+0.0
3,353,326	+		LRK53_RS15355	0.21	+3.6
3,353,326	+		LRK53_RS15355	0.21	-0.2
3,353,326	+		LRK53_RS15355	0.21	-0.7
3,353,326	+		LRK53_RS15355	0.21	-0.2
3,353,326	+		LRK53_RS15355	0.21	-0.2
3,353,326	+		LRK53_RS15355	0.21	-0.2
3,353,327	-		LRK53_RS15355	0.21	+3.4
3,353,327	-		LRK53_RS15355	0.21	-0.4
3,353,327	-		LRK53_RS15355	0.21	-2.2
3,353,327	-		LRK53_RS15355	0.21	-0.5
3,353,327	-		LRK53_RS15355	0.21	-0.8
3,353,327	-		LRK53_RS15355	0.21	+0.4
3,353,332	+		LRK53_RS15355	0.21	+2.9
3,353,332	+		LRK53_RS15355	0.21	-0.3
3,353,332	+		LRK53_RS15355	0.21	+1.4
3,353,332	+		LRK53_RS15355	0.21	-0.9
3,353,332	+		LRK53_RS15355	0.21	-0.8
3,353,332	+		LRK53_RS15355	0.21	-0.8
3,353,333	-		LRK53_RS15355	0.21	-0.8
3,353,333	-		LRK53_RS15355	0.21	+0.9
3,353,333	-		LRK53_RS15355	0.21	-1.1
3,353,333	-		LRK53_RS15355	0.21	+2.1
3,353,333	-		LRK53_RS15355	0.21	-0.2
3,353,333	-		LRK53_RS15355	0.21	+0.4
3,353,333	-		LRK53_RS15355	0.21	+0.1
3,353,333	-		LRK53_RS15355	0.21	+0.1
3,353,333	-		LRK53_RS15355	0.21	-1.2
3,353,333	-		LRK53_RS15355	0.21	+0.8
3,353,333	-		LRK53_RS15355	0.21	+0.6
3,353,333	-		LRK53_RS15355	0.21	-0.3
3,353,334	+		LRK53_RS15355	0.21	-0.1
3,353,334	+		LRK53_RS15355	0.21	-1.2
3,353,334	+		LRK53_RS15355	0.21	-2.8
3,353,334	+		LRK53_RS15355	0.21	-1.8
3,353,334	+		LRK53_RS15355	0.21	-0.3
3,353,334	+		LRK53_RS15355	0.21	-0.5
3,353,334	+		LRK53_RS15355	0.21	+1.4
3,353,334	+		LRK53_RS15355	0.21	-1.6
3,353,335	-		LRK53_RS15355	0.21	-1.3
3,353,335	-		LRK53_RS15355	0.21	-1.8
3,353,335	-		LRK53_RS15355	0.21	+0.1
3,353,335	-		LRK53_RS15355	0.21	+0.4
3,353,335	-		LRK53_RS15355	0.21	+0.4
3,353,335	-		LRK53_RS15355	0.21	-0.1
3,353,335	-		LRK53_RS15355	0.21	-0.2
3,353,335	-		LRK53_RS15355	0.21	+0.0
3,353,335	-		LRK53_RS15355	0.21	-0.8
3,353,335	-		LRK53_RS15355	0.21	-0.6
3,353,485	+		LRK53_RS15355	0.34	-2.7
3,353,485	+		LRK53_RS15355	0.34	+1.4
3,353,485	+		LRK53_RS15355	0.34	-1.0
3,353,485	+		LRK53_RS15355	0.34	+0.8
3,353,485	+		LRK53_RS15355	0.34	+1.4
3,353,485	+		LRK53_RS15355	0.34	-0.9
3,353,485	+		LRK53_RS15355	0.34	-1.5
3,353,485	+		LRK53_RS15355	0.34	+1.4
3,353,485	+		LRK53_RS15355	0.34	-1.2
3,353,485	+		LRK53_RS15355	0.34	-0.1
3,353,485	+		LRK53_RS15355	0.34	-1.1
3,353,485	+		LRK53_RS15355	0.34	-0.5
3,353,485	+		LRK53_RS15355	0.34	-1.4
3,353,485	+		LRK53_RS15355	0.34	-2.2
3,353,485	+		LRK53_RS15355	0.34	-0.1
3,353,486	-		LRK53_RS15355	0.34	+0.4
3,353,486	-		LRK53_RS15355	0.34	-1.1
3,353,486	-		LRK53_RS15355	0.34	+1.4
3,353,486	-		LRK53_RS15355	0.34	+0.4
3,353,486	-		LRK53_RS15355	0.34	+1.1
3,353,486	-		LRK53_RS15355	0.34	-2.7
3,353,486	-		LRK53_RS15355	0.34	-1.0
3,353,486	-		LRK53_RS15355	0.34	-0.4
3,353,486	-		LRK53_RS15355	0.34	+0.4
3,353,486	-		LRK53_RS15355	0.34	-0.9
3,353,486	-		LRK53_RS15355	0.34	+0.4
3,353,486	-		LRK53_RS15355	0.34	-1.0
3,353,486	-		LRK53_RS15355	0.34	-1.0
3,353,486	-		LRK53_RS15355	0.34	-0.4
3,353,538	+		LRK53_RS15355	0.38	-2.0
3,353,539	-		LRK53_RS15355	0.38	-0.8
3,353,539	-		LRK53_RS15355	0.38	+1.4
3,353,605	+		LRK53_RS15355	0.44	-0.8
3,353,606	-		LRK53_RS15355	0.44	-2.8
3,353,606	-		LRK53_RS15355	0.44	+1.4
3,353,606	-		LRK53_RS15355	0.44	+0.7
3,353,689	+		LRK53_RS15355	0.50	-1.2
3,353,689	+		LRK53_RS15355	0.50	-3.0
3,353,689	+		LRK53_RS15355	0.50	-0.2
3,353,689	+		LRK53_RS15355	0.50	-0.6
3,353,690	-		LRK53_RS15355	0.51	-0.5
3,353,690	-		LRK53_RS15355	0.51	-2.0
3,353,690	-		LRK53_RS15355	0.51	-0.6
3,353,690	-		LRK53_RS15355	0.51	-0.2
3,353,833	-		LRK53_RS15355	0.62	+0.2
3,353,923	+		LRK53_RS15355	0.70	-1.1
3,353,923	+		LRK53_RS15355	0.70	+0.4
3,353,923	+		LRK53_RS15355	0.70	-1.2
3,353,923	+		LRK53_RS15355	0.70	-1.2
3,353,924	-		LRK53_RS15355	0.70	-2.3
3,353,924	-		LRK53_RS15355	0.70	-2.4
3,353,924	-		LRK53_RS15355	0.70	-0.8
3,353,924	-		LRK53_RS15355	0.70	-0.6
3,353,924	-		LRK53_RS15355	0.70	+1.4
3,353,924	-		LRK53_RS15355	0.70	-0.3
3,353,924	-		LRK53_RS15355	0.70	+0.4
3,353,964	+		LRK53_RS15355	0.73	-0.3
3,353,964	+		LRK53_RS15355	0.73	+2.4
3,353,965	-		LRK53_RS15355	0.73	+0.8
3,353,965	-		LRK53_RS15355	0.73	-0.7
3,354,117	+		LRK53_RS15355	0.86	-0.7
3,354,117	+		LRK53_RS15355	0.86	-1.0
3,354,117	+		LRK53_RS15355	0.86	+0.8
3,354,117	+		LRK53_RS15355	0.86	-0.6
3,354,117	+		LRK53_RS15355	0.86	-1.8
3,354,117	+		LRK53_RS15355	0.86	-1.1
3,354,117	+		LRK53_RS15355	0.86	+1.0
3,354,117	+		LRK53_RS15355	0.86	-0.3
3,354,117	+		LRK53_RS15355	0.86	-1.1
3,354,117	+		LRK53_RS15355	0.86	-0.2
3,354,118	-		LRK53_RS15355	0.86	+0.7
3,354,118	-		LRK53_RS15355	0.86	-0.4
3,354,118	-		LRK53_RS15355	0.86	+2.1
3,354,118	-		LRK53_RS15355	0.86	+0.0
3,354,118	-		LRK53_RS15355	0.86	-2.7
3,354,118	-		LRK53_RS15355	0.86	-0.2
3,354,118	-		LRK53_RS15355	0.86	+1.7
3,354,118	-		LRK53_RS15355	0.86	-2.3
3,354,118	-		LRK53_RS15355	0.86	-1.1
3,354,170	-		LRK53_RS15355	0.90	-1.5
3,354,223	+				-0.6
3,354,223	+				-1.6
3,354,224	-				-1.5
3,354,224	-				+1.7
3,354,224	-				-0.4
3,354,224	-				-0.7
3,354,224	-				-1.0
3,354,224	-				+0.7
3,354,230	+				+0.9
3,354,297	+				+1.4
3,354,297	+				-0.6
3,354,297	+				+0.4
3,354,298	-				+0.4
3,354,409	-				-2.8
3,354,409	-				-1.0
3,354,431	+				-1.0
3,354,431	+				-2.6
3,354,432	-				-0.2
3,354,432	-				+0.8
3,354,432	-				-1.8
3,354,432	-				-1.2
3,354,432	-				+2.4
3,354,432	-				-0.8
3,354,469	-		LRK53_RS15360	0.11	-1.0
3,354,483	+		LRK53_RS15360	0.12	+0.0
3,354,530	+		LRK53_RS15360	0.15	-2.0
3,354,531	-		LRK53_RS15360	0.15	-0.6
3,354,600	+		LRK53_RS15360	0.21	-1.1
3,354,600	+		LRK53_RS15360	0.21	+3.4
3,354,600	+		LRK53_RS15360	0.21	-1.8
3,354,600	+		LRK53_RS15360	0.21	-1.0
3,354,600	+		LRK53_RS15360	0.21	+0.6
3,354,600	+		LRK53_RS15360	0.21	-0.6
3,354,600	+		LRK53_RS15360	0.21	+2.9
3,354,600	+		LRK53_RS15360	0.21	-0.4
3,354,600	+		LRK53_RS15360	0.21	+0.0
3,354,600	+		LRK53_RS15360	0.21	-0.7
3,354,600	+		LRK53_RS15360	0.21	-1.1
3,354,600	+		LRK53_RS15360	0.21	+0.1
3,354,601	-		LRK53_RS15360	0.21	-1.6
3,354,601	-		LRK53_RS15360	0.21	+0.4
3,354,637	+		LRK53_RS15360	0.23	-0.2
3,354,688	+		LRK53_RS15360	0.27	-1.8
3,354,688	+		LRK53_RS15360	0.27	+1.4
3,354,689	-		LRK53_RS15360	0.27	+0.1
3,354,754	-		LRK53_RS15360	0.32	-0.2
3,354,754	-		LRK53_RS15360	0.32	+0.1
3,354,838	+		LRK53_RS15360	0.39	-1.8
3,354,838	+		LRK53_RS15360	0.39	-0.3
3,354,838	+		LRK53_RS15360	0.39	-0.1
3,354,838	+		LRK53_RS15360	0.39	+1.4
3,354,838	+		LRK53_RS15360	0.39	-1.6
3,354,839	-		LRK53_RS15360	0.39	-0.7
3,354,839	-		LRK53_RS15360	0.39	+0.0
3,354,839	-		LRK53_RS15360	0.39	-0.2
3,354,839	-		LRK53_RS15360	0.39	+1.4
3,354,839	-		LRK53_RS15360	0.39	-0.2
3,354,839	-		LRK53_RS15360	0.39	+0.9
3,354,839	-		LRK53_RS15360	0.39	+0.0
3,354,839	-		LRK53_RS15360	0.39	+0.6
3,354,865	+		LRK53_RS15360	0.41	-0.1
3,354,865	+		LRK53_RS15360	0.41	+0.0
3,354,865	+		LRK53_RS15360	0.41	+0.8
3,354,866	-		LRK53_RS15360	0.41	-0.6
3,354,904	-		LRK53_RS15360	0.44	+0.4
3,354,980	+		LRK53_RS15360	0.49	-0.3
3,354,980	+		LRK53_RS15360	0.49	+0.1
3,354,981	-		LRK53_RS15360	0.49	+0.0
3,355,014	+		LRK53_RS15360	0.52	-1.3
3,355,014	+		LRK53_RS15360	0.52	-0.4
3,355,014	+		LRK53_RS15360	0.52	+0.0
3,355,015	-		LRK53_RS15360	0.52	-1.0
3,355,015	-		LRK53_RS15360	0.52	+0.9
3,355,015	-		LRK53_RS15360	0.52	-0.2
3,355,015	-		LRK53_RS15360	0.52	-1.1
3,355,018	+		LRK53_RS15360	0.52	+0.2
3,355,018	+		LRK53_RS15360	0.52	+0.5
3,355,018	+		LRK53_RS15360	0.52	-0.2
3,355,018	+		LRK53_RS15360	0.52	-0.1
3,355,018	+		LRK53_RS15360	0.52	-0.2
3,355,019	-		LRK53_RS15360	0.52	-0.3
3,355,019	-		LRK53_RS15360	0.52	-0.6
3,355,019	-		LRK53_RS15360	0.52	+0.9
3,355,019	-		LRK53_RS15360	0.52	-1.1
3,355,019	-		LRK53_RS15360	0.52	+0.4
3,355,019	-		LRK53_RS15360	0.52	-0.2
3,355,025	+		LRK53_RS15360	0.53	+0.0
3,355,101	+		LRK53_RS15360	0.58	-0.1
3,355,102	-		LRK53_RS15360	0.59	+0.4
3,355,102	-		LRK53_RS15360	0.59	+2.4
3,355,102	-		LRK53_RS15360	0.59	-0.1
3,355,233	+		LRK53_RS15360	0.68	-0.8
3,355,233	+		LRK53_RS15360	0.68	+0.9
3,355,233	+		LRK53_RS15360	0.68	+0.2
3,355,236	+		LRK53_RS15360	0.69	-1.6
3,355,237	-		LRK53_RS15360	0.69	-0.8
3,355,263	-		LRK53_RS15360	0.71	-0.4
3,355,288	+		LRK53_RS15360	0.73	-0.4
3,355,289	-		LRK53_RS15360	0.73	+1.8
3,355,289	-		LRK53_RS15360	0.73	+0.1