Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08370

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08365 and LRK53_RS08370 overlap by 32 nucleotidesLRK53_RS08370 and LRK53_RS08375 are separated by 112 nucleotidesLRK53_RS08375 and LRK53_RS08380 are separated by 82 nucleotides LRK53_RS08365: LRK53_RS08365 - phosphatase PAP2 family protein, at 1,880,004 to 1,880,567 _RS08365 LRK53_RS08370: LRK53_RS08370 - glycosyltransferase family 1 protein, at 1,880,536 to 1,881,696 _RS08370 LRK53_RS08375: LRK53_RS08375 - DUF4399 domain-containing protein, at 1,881,809 to 1,882,246 _RS08375 LRK53_RS08380: LRK53_RS08380 - glutamate--tRNA ligase, at 1,882,329 to 1,883,729 _RS08380 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1879.697 kb on + strandat 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.311 kb on + strand, within LRK53_RS08365at 1880.408 kb on - strand, within LRK53_RS08365at 1880.736 kb on + strand, within LRK53_RS08370at 1880.796 kb on - strand, within LRK53_RS08370at 1880.993 kb on + strand, within LRK53_RS08370at 1880.994 kb on - strand, within LRK53_RS08370at 1880.994 kb on - strand, within LRK53_RS08370at 1880.994 kb on - strand, within LRK53_RS08370at 1881.080 kb on + strand, within LRK53_RS08370at 1881.080 kb on + strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.162 kb on + strand, within LRK53_RS08370at 1881.163 kb on - strand, within LRK53_RS08370at 1881.189 kb on + strand, within LRK53_RS08370at 1881.189 kb on + strand, within LRK53_RS08370at 1881.190 kb on - strand, within LRK53_RS08370at 1881.190 kb on - strand, within LRK53_RS08370at 1881.190 kb on - strand, within LRK53_RS08370at 1881.279 kb on - strand, within LRK53_RS08370at 1881.314 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.668 kb on + strandat 1881.668 kb on + strandat 1881.668 kb on + strandat 1881.668 kb on + strandat 1881.668 kb on + strandat 1881.668 kb on + strandat 1881.668 kb on + strandat 1881.668 kb on + strandat 1881.669 kb on - strandat 1881.669 kb on - strandat 1881.669 kb on - strandat 1881.669 kb on - strandat 1881.669 kb on - strandat 1881.773 kb on + strandat 1881.774 kb on - strandat 1881.774 kb on - strandat 1881.774 kb on - strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.817 kb on + strandat 1881.818 kb on - strandat 1881.818 kb on - strandat 1881.818 kb on - strandat 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.920 kb on + strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1881.921 kb on - strand, within LRK53_RS08375at 1882.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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1,879,697 + -1.8
1,880,204 + LRK53_RS08365 0.35 -1.5
1,880,204 + LRK53_RS08365 0.35 -2.0
1,880,204 + LRK53_RS08365 0.35 -0.7
1,880,204 + LRK53_RS08365 0.35 +0.5
1,880,204 + LRK53_RS08365 0.35 -0.1
1,880,204 + LRK53_RS08365 0.35 +1.3
1,880,204 + LRK53_RS08365 0.35 +0.7
1,880,204 + LRK53_RS08365 0.35 -1.1
1,880,204 + LRK53_RS08365 0.35 -0.4
1,880,204 + LRK53_RS08365 0.35 +0.0
1,880,205 - LRK53_RS08365 0.36 -2.3
1,880,205 - LRK53_RS08365 0.36 +1.3
1,880,205 - LRK53_RS08365 0.36 +0.3
1,880,205 - LRK53_RS08365 0.36 -0.7
1,880,205 - LRK53_RS08365 0.36 -0.3
1,880,205 - LRK53_RS08365 0.36 -0.5
1,880,205 - LRK53_RS08365 0.36 -1.5
1,880,205 - LRK53_RS08365 0.36 +2.6
1,880,205 - LRK53_RS08365 0.36 -0.3
1,880,205 - LRK53_RS08365 0.36 +0.1
1,880,205 - LRK53_RS08365 0.36 +1.3
1,880,205 - LRK53_RS08365 0.36 +0.6
1,880,205 - LRK53_RS08365 0.36 +0.0
1,880,205 - LRK53_RS08365 0.36 -1.3
1,880,205 - LRK53_RS08365 0.36 -2.1
1,880,311 + LRK53_RS08365 0.54 +0.9
1,880,408 - LRK53_RS08365 0.72 +0.2
1,880,736 + LRK53_RS08370 0.17 +0.2
1,880,796 - LRK53_RS08370 0.22 -0.9
1,880,993 + LRK53_RS08370 0.39 +0.3
1,880,994 - LRK53_RS08370 0.39 +0.6
1,880,994 - LRK53_RS08370 0.39 +0.4
1,880,994 - LRK53_RS08370 0.39 +3.3
1,881,080 + LRK53_RS08370 0.47 -1.3
1,881,080 + LRK53_RS08370 0.47 -0.9
1,881,081 - LRK53_RS08370 0.47 +0.5
1,881,081 - LRK53_RS08370 0.47 +0.0
1,881,081 - LRK53_RS08370 0.47 -0.7
1,881,081 - LRK53_RS08370 0.47 +1.3
1,881,081 - LRK53_RS08370 0.47 +0.3
1,881,081 - LRK53_RS08370 0.47 +0.3
1,881,081 - LRK53_RS08370 0.47 -0.2
1,881,081 - LRK53_RS08370 0.47 -1.3
1,881,081 - LRK53_RS08370 0.47 -0.7
1,881,081 - LRK53_RS08370 0.47 +1.3
1,881,081 - LRK53_RS08370 0.47 -0.1
1,881,162 + LRK53_RS08370 0.54 +2.0
1,881,163 - LRK53_RS08370 0.54 +1.3
1,881,189 + LRK53_RS08370 0.56 -3.1
1,881,189 + LRK53_RS08370 0.56 +0.3
1,881,190 - LRK53_RS08370 0.56 -2.3
1,881,190 - LRK53_RS08370 0.56 -0.3
1,881,190 - LRK53_RS08370 0.56 +0.3
1,881,279 - LRK53_RS08370 0.64 +1.3
1,881,314 + LRK53_RS08370 0.67 +0.3
1,881,326 + LRK53_RS08370 0.68 -1.3
1,881,326 + LRK53_RS08370 0.68 +1.8
1,881,326 + LRK53_RS08370 0.68 -1.3
1,881,326 + LRK53_RS08370 0.68 -2.6
1,881,326 + LRK53_RS08370 0.68 -0.1
1,881,326 + LRK53_RS08370 0.68 -0.1
1,881,327 - LRK53_RS08370 0.68 +0.3
1,881,327 - LRK53_RS08370 0.68 +0.7
1,881,327 - LRK53_RS08370 0.68 +0.3
1,881,327 - LRK53_RS08370 0.68 -0.1
1,881,327 - LRK53_RS08370 0.68 -1.6
1,881,327 - LRK53_RS08370 0.68 -0.3
1,881,327 - LRK53_RS08370 0.68 -0.7
1,881,327 - LRK53_RS08370 0.68 +0.3
1,881,327 - LRK53_RS08370 0.68 -0.3
1,881,425 + LRK53_RS08370 0.77 -0.2
1,881,425 + LRK53_RS08370 0.77 +0.9
1,881,425 + LRK53_RS08370 0.77 -0.9
1,881,425 + LRK53_RS08370 0.77 -0.2
1,881,425 + LRK53_RS08370 0.77 +1.3
1,881,425 + LRK53_RS08370 0.77 +0.7
1,881,425 + LRK53_RS08370 0.77 -0.7
1,881,425 + LRK53_RS08370 0.77 +2.1
1,881,425 + LRK53_RS08370 0.77 -0.5
1,881,425 + LRK53_RS08370 0.77 -1.1
1,881,425 + LRK53_RS08370 0.77 -0.7
1,881,425 + LRK53_RS08370 0.77 +0.9
1,881,425 + LRK53_RS08370 0.77 +1.3
1,881,425 + LRK53_RS08370 0.77 -0.8
1,881,425 + LRK53_RS08370 0.77 -0.3
1,881,425 + LRK53_RS08370 0.77 +0.2
1,881,425 + LRK53_RS08370 0.77 +2.3
1,881,425 + LRK53_RS08370 0.77 -0.4
1,881,425 + LRK53_RS08370 0.77 -0.3
1,881,425 + LRK53_RS08370 0.77 -0.3
1,881,426 - LRK53_RS08370 0.77 -0.7
1,881,426 - LRK53_RS08370 0.77 -0.3
1,881,426 - LRK53_RS08370 0.77 -0.9
1,881,426 - LRK53_RS08370 0.77 -0.9
1,881,426 - LRK53_RS08370 0.77 -0.7
1,881,426 - LRK53_RS08370 0.77 +0.5
1,881,426 - LRK53_RS08370 0.77 +1.3
1,881,426 - LRK53_RS08370 0.77 -1.1
1,881,426 - LRK53_RS08370 0.77 -0.6
1,881,426 - LRK53_RS08370 0.77 -0.3
1,881,426 - LRK53_RS08370 0.77 -0.6
1,881,426 - LRK53_RS08370 0.77 +1.3
1,881,426 - LRK53_RS08370 0.77 -1.1
1,881,426 - LRK53_RS08370 0.77 -0.3
1,881,426 - LRK53_RS08370 0.77 -1.2
1,881,426 - LRK53_RS08370 0.77 -0.3
1,881,426 - LRK53_RS08370 0.77 -2.5
1,881,426 - LRK53_RS08370 0.77 +0.0
1,881,426 - LRK53_RS08370 0.77 +0.5
1,881,426 - LRK53_RS08370 0.77 +0.5
1,881,426 - LRK53_RS08370 0.77 -0.1
1,881,426 - LRK53_RS08370 0.77 -1.0
1,881,426 - LRK53_RS08370 0.77 +0.3
1,881,426 - LRK53_RS08370 0.77 +0.3
1,881,426 - LRK53_RS08370 0.77 -1.9
1,881,426 - LRK53_RS08370 0.77 +0.5
1,881,426 - LRK53_RS08370 0.77 +1.8
1,881,668 + +1.3
1,881,668 + -0.5
1,881,668 + -0.3
1,881,668 + -0.5
1,881,668 + +1.4
1,881,668 + -0.5
1,881,668 + -0.1
1,881,668 + -0.1
1,881,669 - +0.5
1,881,669 - +1.3
1,881,669 - -0.1
1,881,669 - +0.5
1,881,669 - +0.7
1,881,773 + +0.3
1,881,774 - +0.4
1,881,774 - -0.8
1,881,774 - -1.3
1,881,817 + +0.0
1,881,817 + -0.3
1,881,817 + -0.7
1,881,817 + +1.6
1,881,817 + +0.9
1,881,817 + -1.4
1,881,817 + +1.3
1,881,817 + +3.6
1,881,817 + -0.5
1,881,818 - -1.5
1,881,818 - +0.2
1,881,818 - -0.5
1,881,920 + LRK53_RS08375 0.25 -0.5
1,881,920 + LRK53_RS08375 0.25 -1.5
1,881,920 + LRK53_RS08375 0.25 +2.3
1,881,920 + LRK53_RS08375 0.25 -1.1
1,881,920 + LRK53_RS08375 0.25 -0.3
1,881,920 + LRK53_RS08375 0.25 -1.1
1,881,920 + LRK53_RS08375 0.25 -0.3
1,881,920 + LRK53_RS08375 0.25 +1.6
1,881,920 + LRK53_RS08375 0.25 -1.7
1,881,920 + LRK53_RS08375 0.25 -0.4
1,881,920 + LRK53_RS08375 0.25 -0.8
1,881,921 - LRK53_RS08375 0.26 +1.1
1,881,921 - LRK53_RS08375 0.26 +1.3
1,881,921 - LRK53_RS08375 0.26 -1.7
1,881,921 - LRK53_RS08375 0.26 +0.5
1,881,921 - LRK53_RS08375 0.26 +0.3
1,881,921 - LRK53_RS08375 0.26 +2.3
1,881,921 - LRK53_RS08375 0.26 -0.5
1,881,921 - LRK53_RS08375 0.26 -1.7
1,881,921 - LRK53_RS08375 0.26 +1.3
1,881,921 - LRK53_RS08375 0.26 -0.1
1,882,324 + -1.6

Or see this region's nucleotide sequence