Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07370

Experiment: NLDM_defined; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS07360 and LRK53_RS07365 overlap by 4 nucleotidesLRK53_RS07365 and LRK53_RS07370 are separated by 30 nucleotidesLRK53_RS07370 and LRK53_RS07375 are separated by 87 nucleotidesLRK53_RS07375 and LRK53_RS07380 are separated by 15 nucleotides LRK53_RS07360: LRK53_RS07360 - Rid family hydrolase, at 1,650,935 to 1,651,366 _RS07360 LRK53_RS07365: LRK53_RS07365 - carbonate dehydratase, at 1,651,363 to 1,652,028 _RS07365 LRK53_RS07370: LRK53_RS07370 - aldehyde dehydrogenase, at 1,652,059 to 1,653,546 _RS07370 LRK53_RS07375: LRK53_RS07375 - SDR family oxidoreductase, at 1,653,634 to 1,654,425 _RS07375 LRK53_RS07380: LRK53_RS07380 - hypothetical protein, at 1,654,441 to 1,654,755 _RS07380 Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.197 kb on + strand, within LRK53_RS07360at 1651.197 kb on + strand, within LRK53_RS07360at 1651.314 kb on + strand, within LRK53_RS07360at 1652.060 kb on + strandat 1652.060 kb on + strandat 1652.060 kb on + strandat 1652.060 kb on + strandat 1652.084 kb on + strandat 1652.084 kb on + strandat 1652.084 kb on + strandat 1652.085 kb on - strandat 1652.482 kb on + strand, within LRK53_RS07370at 1652.482 kb on + strand, within LRK53_RS07370at 1652.483 kb on - strand, within LRK53_RS07370at 1652.619 kb on - strand, within LRK53_RS07370at 1652.639 kb on + strand, within LRK53_RS07370at 1652.639 kb on + strand, within LRK53_RS07370at 1652.640 kb on - strand, within LRK53_RS07370at 1652.640 kb on - strand, within LRK53_RS07370at 1652.640 kb on - strand, within LRK53_RS07370at 1652.653 kb on + strand, within LRK53_RS07370at 1652.653 kb on + strand, within LRK53_RS07370at 1652.654 kb on - strand, within LRK53_RS07370at 1652.654 kb on - strand, within LRK53_RS07370at 1652.654 kb on - strand, within LRK53_RS07370at 1652.654 kb on - strand, within LRK53_RS07370at 1652.995 kb on + strand, within LRK53_RS07370at 1652.995 kb on + strand, within LRK53_RS07370at 1652.995 kb on + strand, within LRK53_RS07370at 1652.996 kb on - strand, within LRK53_RS07370at 1652.996 kb on - strand, within LRK53_RS07370at 1652.996 kb on - strand, within LRK53_RS07370at 1652.996 kb on - strand, within LRK53_RS07370at 1652.996 kb on - strand, within LRK53_RS07370at 1653.065 kb on + strand, within LRK53_RS07370at 1653.065 kb on + strand, within LRK53_RS07370at 1653.065 kb on + strand, within LRK53_RS07370at 1653.066 kb on - strand, within LRK53_RS07370at 1653.066 kb on - strand, within LRK53_RS07370at 1653.066 kb on - strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.125 kb on + strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.126 kb on - strand, within LRK53_RS07370at 1653.206 kb on + strand, within LRK53_RS07370at 1653.206 kb on + strand, within LRK53_RS07370at 1653.206 kb on + strand, within LRK53_RS07370at 1653.206 kb on + strand, within LRK53_RS07370at 1653.206 kb on + strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.207 kb on - strand, within LRK53_RS07370at 1653.338 kb on + strand, within LRK53_RS07370at 1653.338 kb on + strand, within LRK53_RS07370at 1653.338 kb on + strand, within LRK53_RS07370at 1653.338 kb on + strand, within LRK53_RS07370at 1653.339 kb on - strand, within LRK53_RS07370at 1653.339 kb on - strand, within LRK53_RS07370at 1653.339 kb on - strand, within LRK53_RS07370at 1653.339 kb on - strand, within LRK53_RS07370at 1653.339 kb on - strand, within LRK53_RS07370at 1653.339 kb on - strand, within LRK53_RS07370at 1653.558 kb on + strandat 1653.558 kb on + strandat 1653.558 kb on + strandat 1653.559 kb on - strandat 1653.559 kb on - strandat 1653.559 kb on - strandat 1653.559 kb on - strandat 1653.595 kb on + strandat 1653.595 kb on + strandat 1653.595 kb on + strandat 1653.595 kb on + strandat 1653.596 kb on - strandat 1653.596 kb on - strandat 1653.596 kb on - strandat 1653.596 kb on - strandat 1653.689 kb on + strandat 1653.689 kb on + strandat 1653.689 kb on + strandat 1653.689 kb on + strandat 1653.690 kb on - strandat 1653.690 kb on - strandat 1653.690 kb on - strandat 1653.690 kb on - strandat 1653.860 kb on + strand, within LRK53_RS07375at 1653.860 kb on + strand, within LRK53_RS07375at 1653.860 kb on + strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1653.861 kb on - strand, within LRK53_RS07375at 1654.121 kb on + strand, within LRK53_RS07375at 1654.121 kb on + strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.122 kb on - strand, within LRK53_RS07375at 1654.505 kb on + strand, within LRK53_RS07380at 1654.505 kb on + strand, within LRK53_RS07380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
remove
1,651,065 + LRK53_RS07360 0.30 +3.6
1,651,065 + LRK53_RS07360 0.30 -0.7
1,651,065 + LRK53_RS07360 0.30 +0.3
1,651,065 + LRK53_RS07360 0.30 -1.1
1,651,065 + LRK53_RS07360 0.30 +0.3
1,651,065 + LRK53_RS07360 0.30 +1.3
1,651,066 - LRK53_RS07360 0.30 -1.2
1,651,066 - LRK53_RS07360 0.30 -1.1
1,651,066 - LRK53_RS07360 0.30 -1.9
1,651,066 - LRK53_RS07360 0.30 +0.4
1,651,066 - LRK53_RS07360 0.30 -1.1
1,651,066 - LRK53_RS07360 0.30 -0.7
1,651,066 - LRK53_RS07360 0.30 +1.3
1,651,066 - LRK53_RS07360 0.30 -0.8
1,651,197 + LRK53_RS07360 0.61 +0.3
1,651,197 + LRK53_RS07360 0.61 +1.3
1,651,314 + LRK53_RS07360 0.88 -1.2
1,652,060 + -0.3
1,652,060 + -0.9
1,652,060 + +0.9
1,652,060 + -0.4
1,652,084 + +0.3
1,652,084 + +1.3
1,652,084 + +0.1
1,652,085 - +3.1
1,652,482 + LRK53_RS07370 0.28 +0.3
1,652,482 + LRK53_RS07370 0.28 -1.7
1,652,483 - LRK53_RS07370 0.28 +1.3
1,652,619 - LRK53_RS07370 0.38 -1.9
1,652,639 + LRK53_RS07370 0.39 -0.3
1,652,639 + LRK53_RS07370 0.39 +0.3
1,652,640 - LRK53_RS07370 0.39 -0.2
1,652,640 - LRK53_RS07370 0.39 +0.8
1,652,640 - LRK53_RS07370 0.39 +0.3
1,652,653 + LRK53_RS07370 0.40 -2.1
1,652,653 + LRK53_RS07370 0.40 +0.3
1,652,654 - LRK53_RS07370 0.40 -0.5
1,652,654 - LRK53_RS07370 0.40 +0.8
1,652,654 - LRK53_RS07370 0.40 +0.0
1,652,654 - LRK53_RS07370 0.40 -1.2
1,652,995 + LRK53_RS07370 0.63 -0.3
1,652,995 + LRK53_RS07370 0.63 -0.3
1,652,995 + LRK53_RS07370 0.63 +0.1
1,652,996 - LRK53_RS07370 0.63 -0.5
1,652,996 - LRK53_RS07370 0.63 +0.3
1,652,996 - LRK53_RS07370 0.63 +0.3
1,652,996 - LRK53_RS07370 0.63 -1.7
1,652,996 - LRK53_RS07370 0.63 -1.1
1,653,065 + LRK53_RS07370 0.68 +1.0
1,653,065 + LRK53_RS07370 0.68 -0.6
1,653,065 + LRK53_RS07370 0.68 +0.3
1,653,066 - LRK53_RS07370 0.68 -0.0
1,653,066 - LRK53_RS07370 0.68 -0.4
1,653,066 - LRK53_RS07370 0.68 +0.0
1,653,125 + LRK53_RS07370 0.72 -0.3
1,653,125 + LRK53_RS07370 0.72 -1.2
1,653,125 + LRK53_RS07370 0.72 +0.5
1,653,125 + LRK53_RS07370 0.72 -1.1
1,653,125 + LRK53_RS07370 0.72 +0.7
1,653,125 + LRK53_RS07370 0.72 -0.4
1,653,125 + LRK53_RS07370 0.72 +2.5
1,653,125 + LRK53_RS07370 0.72 +1.3
1,653,125 + LRK53_RS07370 0.72 -0.6
1,653,125 + LRK53_RS07370 0.72 +2.3
1,653,125 + LRK53_RS07370 0.72 -0.1
1,653,125 + LRK53_RS07370 0.72 +0.6
1,653,125 + LRK53_RS07370 0.72 -1.2
1,653,125 + LRK53_RS07370 0.72 -1.3
1,653,125 + LRK53_RS07370 0.72 -1.9
1,653,125 + LRK53_RS07370 0.72 -1.3
1,653,125 + LRK53_RS07370 0.72 -0.3
1,653,125 + LRK53_RS07370 0.72 -0.2
1,653,125 + LRK53_RS07370 0.72 +0.4
1,653,125 + LRK53_RS07370 0.72 -0.3
1,653,126 - LRK53_RS07370 0.72 -1.3
1,653,126 - LRK53_RS07370 0.72 -0.3
1,653,126 - LRK53_RS07370 0.72 +0.4
1,653,126 - LRK53_RS07370 0.72 -0.6
1,653,126 - LRK53_RS07370 0.72 -1.3
1,653,126 - LRK53_RS07370 0.72 +0.5
1,653,126 - LRK53_RS07370 0.72 -0.4
1,653,126 - LRK53_RS07370 0.72 +0.3
1,653,126 - LRK53_RS07370 0.72 -0.3
1,653,126 - LRK53_RS07370 0.72 -0.3
1,653,126 - LRK53_RS07370 0.72 +0.3
1,653,126 - LRK53_RS07370 0.72 -0.6
1,653,126 - LRK53_RS07370 0.72 -0.1
1,653,126 - LRK53_RS07370 0.72 +0.3
1,653,126 - LRK53_RS07370 0.72 -0.3
1,653,126 - LRK53_RS07370 0.72 -0.7
1,653,126 - LRK53_RS07370 0.72 -0.6
1,653,126 - LRK53_RS07370 0.72 +0.7
1,653,126 - LRK53_RS07370 0.72 +2.3
1,653,126 - LRK53_RS07370 0.72 -0.1
1,653,126 - LRK53_RS07370 0.72 -1.0
1,653,126 - LRK53_RS07370 0.72 +0.3
1,653,126 - LRK53_RS07370 0.72 +0.6
1,653,206 + LRK53_RS07370 0.77 -0.4
1,653,206 + LRK53_RS07370 0.77 -1.1
1,653,206 + LRK53_RS07370 0.77 -0.3
1,653,206 + LRK53_RS07370 0.77 +0.8
1,653,206 + LRK53_RS07370 0.77 +0.7
1,653,207 - LRK53_RS07370 0.77 +0.3
1,653,207 - LRK53_RS07370 0.77 +0.8
1,653,207 - LRK53_RS07370 0.77 +0.9
1,653,207 - LRK53_RS07370 0.77 +1.3
1,653,207 - LRK53_RS07370 0.77 -1.3
1,653,207 - LRK53_RS07370 0.77 -0.4
1,653,207 - LRK53_RS07370 0.77 +0.3
1,653,207 - LRK53_RS07370 0.77 -1.1
1,653,207 - LRK53_RS07370 0.77 -0.8
1,653,338 + LRK53_RS07370 0.86 -0.3
1,653,338 + LRK53_RS07370 0.86 -0.0
1,653,338 + LRK53_RS07370 0.86 -0.7
1,653,338 + LRK53_RS07370 0.86 +0.8
1,653,339 - LRK53_RS07370 0.86 +0.3
1,653,339 - LRK53_RS07370 0.86 +1.3
1,653,339 - LRK53_RS07370 0.86 -2.6
1,653,339 - LRK53_RS07370 0.86 -0.9
1,653,339 - LRK53_RS07370 0.86 +2.3
1,653,339 - LRK53_RS07370 0.86 +1.3
1,653,558 + -0.6
1,653,558 + +0.3
1,653,558 + -0.2
1,653,559 - -1.1
1,653,559 - +1.8
1,653,559 - +0.0
1,653,559 - -0.7
1,653,595 + -0.7
1,653,595 + +1.3
1,653,595 + -0.5
1,653,595 + -1.7
1,653,596 - +1.3
1,653,596 - -1.3
1,653,596 - -3.2
1,653,596 - -0.7
1,653,689 + +0.3
1,653,689 + -0.9
1,653,689 + +1.3
1,653,689 + +1.7
1,653,690 - -0.2
1,653,690 - -0.7
1,653,690 - -0.4
1,653,690 - -0.5
1,653,860 + LRK53_RS07375 0.29 +1.0
1,653,860 + LRK53_RS07375 0.29 +2.3
1,653,860 + LRK53_RS07375 0.29 -3.1
1,653,861 - LRK53_RS07375 0.29 -0.0
1,653,861 - LRK53_RS07375 0.29 -0.1
1,653,861 - LRK53_RS07375 0.29 +1.7
1,653,861 - LRK53_RS07375 0.29 -0.5
1,653,861 - LRK53_RS07375 0.29 -0.2
1,653,861 - LRK53_RS07375 0.29 +1.3
1,653,861 - LRK53_RS07375 0.29 -0.4
1,653,861 - LRK53_RS07375 0.29 +3.6
1,653,861 - LRK53_RS07375 0.29 +0.4
1,654,121 + LRK53_RS07375 0.61 +0.3
1,654,121 + LRK53_RS07375 0.61 -1.3
1,654,122 - LRK53_RS07375 0.62 +0.3
1,654,122 - LRK53_RS07375 0.62 +0.3
1,654,122 - LRK53_RS07375 0.62 -0.0
1,654,122 - LRK53_RS07375 0.62 -0.3
1,654,122 - LRK53_RS07375 0.62 -0.8
1,654,122 - LRK53_RS07375 0.62 -0.3
1,654,122 - LRK53_RS07375 0.62 -0.3
1,654,122 - LRK53_RS07375 0.62 -1.6
1,654,122 - LRK53_RS07375 0.62 -0.9
1,654,122 - LRK53_RS07375 0.62 +0.4
1,654,505 + LRK53_RS07380 0.20 -0.3
1,654,505 + LRK53_RS07380 0.20 +0.3

Or see this region's nucleotide sequence