Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04665

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
1,086,222	+		LRK53_RS04660	0.75	-0.2
1,086,222	+		LRK53_RS04660	0.75	-2.0
1,086,223	-		LRK53_RS04660	0.75	+0.7
1,086,223	-		LRK53_RS04660	0.75	+0.4
1,086,223	-		LRK53_RS04660	0.75	-1.8
1,086,223	-		LRK53_RS04660	0.75	-0.5
1,086,223	-		LRK53_RS04660	0.75	-1.0
1,086,408	+		LRK53_RS04660	0.81	-0.7
1,086,408	+		LRK53_RS04660	0.81	+1.3
1,086,408	+		LRK53_RS04660	0.81	-0.3
1,086,408	+		LRK53_RS04660	0.81	-0.0
1,086,408	+		LRK53_RS04660	0.81	-1.2
1,086,408	+		LRK53_RS04660	0.81	-0.0
1,086,409	-		LRK53_RS04660	0.81	-0.6
1,086,409	-		LRK53_RS04660	0.81	-0.7
1,086,409	-		LRK53_RS04660	0.81	-0.6
1,086,409	-		LRK53_RS04660	0.81	-0.9
1,086,409	-		LRK53_RS04660	0.81	-1.3
1,086,409	-		LRK53_RS04660	0.81	-1.1
1,086,409	-		LRK53_RS04660	0.81	-0.3
1,086,409	-		LRK53_RS04660	0.81	+0.1
1,086,409	-		LRK53_RS04660	0.81	-1.7
1,086,409	-		LRK53_RS04660	0.81	+0.3
1,086,409	-		LRK53_RS04660	0.81	-1.7
1,086,441	+		LRK53_RS04660	0.82	-1.2
1,086,442	-		LRK53_RS04660	0.82	-1.5
1,086,450	+		LRK53_RS04660	0.82	-0.3
1,086,450	+		LRK53_RS04660	0.82	-1.8
1,086,450	+		LRK53_RS04660	0.82	-0.3
1,086,450	+		LRK53_RS04660	0.82	+0.4
1,086,451	-		LRK53_RS04660	0.82	-0.3
1,086,451	-		LRK53_RS04660	0.82	-1.5
1,086,451	-		LRK53_RS04660	0.82	-0.4
1,086,571	+		LRK53_RS04660	0.86	+1.3
1,086,571	+		LRK53_RS04660	0.86	+1.4
1,086,571	+		LRK53_RS04660	0.86	+3.3
1,086,571	+		LRK53_RS04660	0.86	+0.7
1,086,572	-		LRK53_RS04660	0.86	-1.0
1,086,572	-		LRK53_RS04660	0.86	-1.9
1,086,575	+		LRK53_RS04660	0.87	-2.0
1,086,575	+		LRK53_RS04660	0.87	-0.0
1,086,575	+		LRK53_RS04660	0.87	-0.5
1,086,575	+		LRK53_RS04660	0.87	+0.4
1,086,575	+		LRK53_RS04660	0.87	-0.4
1,086,575	+		LRK53_RS04660	0.87	-0.2
1,086,575	+		LRK53_RS04660	0.87	-1.3
1,086,575	+		LRK53_RS04660	0.87	-0.3
1,086,575	+		LRK53_RS04660	0.87	-0.7
1,086,575	+		LRK53_RS04660	0.87	-0.5
1,086,575	+		LRK53_RS04660	0.87	-0.9
1,086,575	+		LRK53_RS04660	0.87	+0.4
1,086,575	+		LRK53_RS04660	0.87	+0.7
1,086,576	-		LRK53_RS04660	0.87	+1.3
1,086,576	-		LRK53_RS04660	0.87	-2.9
1,086,576	-		LRK53_RS04660	0.87	+0.1
1,086,576	-		LRK53_RS04660	0.87	-1.5
1,086,576	-		LRK53_RS04660	0.87	-0.4
1,086,576	-		LRK53_RS04660	0.87	+1.3
1,086,576	-		LRK53_RS04660	0.87	-2.3
1,086,576	-		LRK53_RS04660	0.87	-1.5
1,086,576	-		LRK53_RS04660	0.87	-1.0
1,087,041	+				-0.8
1,087,041	+				-0.4
1,087,041	+				-1.3
1,087,041	+				+1.3
1,087,041	+				-1.2
1,087,041	+				-0.7
1,087,041	+				+0.9
1,087,041	+				-0.4
1,087,041	+				+0.5
1,087,041	+				-0.4
1,087,041	+				+0.3
1,087,042	-				-0.9
1,087,042	-				+0.1
1,087,042	-				-1.5
1,087,042	-				+0.4
1,087,042	-				+0.3
1,087,042	-				+1.6
1,087,042	-				+0.3
1,087,042	-				+0.3
1,087,042	-				+0.8
1,087,042	-				+0.3
1,087,042	-				+0.7
1,087,042	-				+2.3
1,087,042	-				+0.1
1,087,042	-				+0.3
1,087,046	+				-0.8
1,087,046	+				+1.3
1,087,046	+				-1.5
1,087,046	+				-1.2
1,087,046	+				-0.2
1,087,046	+				-0.4
1,087,047	-				-0.7
1,087,047	-				-0.0
1,087,090	+				-0.5
1,087,090	+				-0.6
1,087,090	+				+1.3
1,087,090	+				-0.3
1,087,090	+				-0.2
1,087,090	+				-1.2
1,087,090	+				-0.2
1,087,090	+				-0.4
1,087,090	+				-2.0
1,087,090	+				-0.2
1,087,090	+				+0.3
1,087,090	+				-1.2
1,087,090	+				-0.5
1,087,090	+				-2.4
1,087,090	+				+0.1
1,087,090	+				+0.3
1,087,090	+				-1.0
1,087,090	+				-0.9
1,087,090	+				-0.6
1,087,090	+				-1.3
1,087,090	+				-0.3
1,087,090	+				-1.3
1,087,090	+				-0.3
1,087,090	+				+0.1
1,087,090	+				+1.6
1,087,090	+				-0.5
1,087,090	+				-0.3
1,087,090	+				-0.0
1,087,090	+				-0.3
1,087,090	+				+0.4
1,087,090	+				-0.3
1,087,090	+				-1.0
1,087,090	+				+0.2
1,087,090	+				-1.5
1,087,090	+				-1.0
1,087,090	+				+0.3
1,087,090	+				+1.3
1,087,090	+				+0.2
1,087,090	+				+0.0
1,087,090	+				-0.8
1,087,090	+				-1.2
1,087,090	+				-1.2
1,087,090	+				+0.1
1,087,090	+				-1.5
1,087,090	+				-0.5
1,087,090	+				-0.4
1,087,090	+				-1.2
1,087,090	+				-2.2
1,087,090	+				-1.0
1,087,090	+				-0.0
1,087,090	+				+0.1
1,087,090	+				+0.8
1,087,090	+				+0.7
1,087,090	+				-0.7
1,087,090	+				+2.3
1,087,091	-				-1.5
1,087,091	-				+1.0
1,087,091	-				-0.5
1,087,091	-				+0.7
1,087,091	-				-0.6
1,087,091	-				+0.4
1,087,091	-				+0.5
1,087,091	-				-1.1
1,087,091	-				-1.0
1,087,091	-				+1.3
1,087,091	-				+1.3
1,087,091	-				+0.3
1,087,091	-				-0.3
1,087,091	-				-0.3
1,087,091	-				+0.9
1,087,091	-				+0.1
1,087,091	-				-1.2
1,087,091	-				-0.1
1,087,091	-				+1.3
1,087,091	-				+0.3
1,087,091	-				+0.3
1,087,091	-				-0.8
1,087,091	-				+0.3
1,087,091	-				+0.3
1,087,091	-				-1.0
1,087,091	-				-0.7
1,087,091	-				+1.0
1,087,091	-				-1.3
1,087,091	-				-1.3
1,087,091	-				-1.1
1,087,091	-				-1.3
1,087,091	-				+1.4
1,087,091	-				-0.9
1,087,091	-				+1.3
1,087,091	-				-1.9
1,087,091	-				+1.0
1,087,091	-				-0.3
1,087,091	-				+2.9
1,087,091	-				-0.5
1,087,091	-				-1.3
1,087,091	-				-0.5
1,087,091	-				+1.9
1,087,091	-				+1.9
1,087,091	-				+0.3
1,087,091	-				+0.0
1,087,091	-				+0.3
1,087,091	-				+0.1
1,087,091	-				-1.5
1,087,091	-				+0.9
1,087,091	-				-1.5
1,087,091	-				-0.4
1,087,091	-				-0.7
1,087,091	-				-0.1
1,087,091	-				-0.6
1,087,091	-				-0.6
1,087,091	-				-0.3
1,087,091	-				-0.2
1,087,091	-				-0.2
1,087,091	-				+0.7
1,087,091	-				-0.3
1,087,091	-				-2.2
1,087,091	-				-0.0
1,087,091	-				-0.3
1,087,091	-				-1.7
1,087,091	-				+0.5
1,087,091	-				+0.5
1,087,091	-				-0.0
1,087,091	-				-0.7
1,087,091	-				-0.3
1,087,091	-				-0.7
1,087,091	-				+2.9
1,087,091	-				+1.3
1,087,154	+				+0.4
1,087,155	-				-0.7
1,087,208	+				-1.0
1,087,209	-				-0.2
1,087,209	-				-0.4
1,087,271	+				+0.3
1,087,271	+				+1.4
1,087,271	+				-0.3
1,087,271	+				-1.0
1,087,271	+				-0.1
1,087,271	+				-0.6
1,087,271	+				-1.9
1,087,271	+				+1.7
1,087,271	+				-2.2
1,087,272	-				-0.6
1,087,272	-				-0.8
1,087,272	-				+0.7
1,087,388	+		LRK53_RS04665	0.11	-0.9
1,087,388	+		LRK53_RS04665	0.11	+1.0
1,087,388	+		LRK53_RS04665	0.11	-0.7
1,087,389	-		LRK53_RS04665	0.11	+0.5
1,087,389	-		LRK53_RS04665	0.11	-0.3
1,087,520	+		LRK53_RS04665	0.17	+1.3
1,087,520	+		LRK53_RS04665	0.17	-0.4
1,087,520	+		LRK53_RS04665	0.17	+0.3
1,087,520	+		LRK53_RS04665	0.17	+1.3
1,087,520	+		LRK53_RS04665	0.17	-2.0
1,087,520	+		LRK53_RS04665	0.17	-0.8
1,087,520	+		LRK53_RS04665	0.17	-1.8
1,087,520	+		LRK53_RS04665	0.17	+1.3
1,087,521	-		LRK53_RS04665	0.17	-0.6
1,087,521	-		LRK53_RS04665	0.17	-0.2
1,087,521	-		LRK53_RS04665	0.17	+0.7
1,087,521	-		LRK53_RS04665	0.17	-1.1
1,087,521	-		LRK53_RS04665	0.17	-2.0
1,087,521	-		LRK53_RS04665	0.17	-2.4
1,087,521	-		LRK53_RS04665	0.17	+0.5
1,087,622	+		LRK53_RS04665	0.22	-1.9
1,087,622	+		LRK53_RS04665	0.22	-0.2
1,087,622	+		LRK53_RS04665	0.22	-0.3
1,087,622	+		LRK53_RS04665	0.22	-1.5
1,087,622	+		LRK53_RS04665	0.22	-1.4
1,087,622	+		LRK53_RS04665	0.22	+0.9
1,087,623	-		LRK53_RS04665	0.22	+0.7
1,087,623	-		LRK53_RS04665	0.22	-0.1
1,087,623	-		LRK53_RS04665	0.22	-1.7
1,087,623	-		LRK53_RS04665	0.22	-0.9
1,087,623	-		LRK53_RS04665	0.22	-0.6
1,087,751	+		LRK53_RS04665	0.28	+0.3
1,087,751	+		LRK53_RS04665	0.28	-1.0
1,087,751	+		LRK53_RS04665	0.28	-0.0
1,087,751	+		LRK53_RS04665	0.28	-0.3
1,087,751	+		LRK53_RS04665	0.28	-0.7
1,087,751	+		LRK53_RS04665	0.28	-0.0
1,087,751	+		LRK53_RS04665	0.28	-3.0
1,087,751	+		LRK53_RS04665	0.28	+1.0
1,087,751	+		LRK53_RS04665	0.28	-1.5
1,087,751	+		LRK53_RS04665	0.28	-0.3
1,087,751	+		LRK53_RS04665	0.28	+0.3
1,087,751	+		LRK53_RS04665	0.28	-1.7
1,087,751	+		LRK53_RS04665	0.28	+1.3
1,087,752	-		LRK53_RS04665	0.28	-1.3
1,087,752	-		LRK53_RS04665	0.28	-1.0
1,087,752	-		LRK53_RS04665	0.28	-0.5
1,087,752	-		LRK53_RS04665	0.28	+1.9
1,087,752	-		LRK53_RS04665	0.28	+0.3
1,087,752	-		LRK53_RS04665	0.28	+0.3
1,087,752	-		LRK53_RS04665	0.28	-2.7
1,087,752	-		LRK53_RS04665	0.28	-0.3
1,087,752	-		LRK53_RS04665	0.28	-1.5
1,087,752	-		LRK53_RS04665	0.28	-1.1
1,087,752	-		LRK53_RS04665	0.28	-1.9
1,087,752	-		LRK53_RS04665	0.28	-0.3
1,087,752	-		LRK53_RS04665	0.28	-0.5
1,087,752	-		LRK53_RS04665	0.28	-0.3
1,087,752	-		LRK53_RS04665	0.28	-2.0
1,087,949	+		LRK53_RS04665	0.37	-0.3
1,087,949	+		LRK53_RS04665	0.37	+0.3
1,087,949	+		LRK53_RS04665	0.37	+0.9
1,087,950	-		LRK53_RS04665	0.37	+0.3
1,087,950	-		LRK53_RS04665	0.37	-0.3
1,087,950	-		LRK53_RS04665	0.37	+0.8
1,087,950	-		LRK53_RS04665	0.37	+1.3
1,088,240	+		LRK53_RS04665	0.51	-0.7
1,088,240	+		LRK53_RS04665	0.51	-1.4
1,088,240	+		LRK53_RS04665	0.51	+2.3
1,088,240	+		LRK53_RS04665	0.51	+0.7
1,088,240	+		LRK53_RS04665	0.51	+0.8
1,088,241	-		LRK53_RS04665	0.51	-1.3
1,088,241	-		LRK53_RS04665	0.51	-1.1
1,088,241	-		LRK53_RS04665	0.51	-0.2
1,088,241	-		LRK53_RS04665	0.51	-0.8
1,088,241	-		LRK53_RS04665	0.51	-1.3
1,088,241	-		LRK53_RS04665	0.51	-1.3
1,088,396	+		LRK53_RS04665	0.58	-2.0
1,088,396	+		LRK53_RS04665	0.58	-0.8
1,088,397	-		LRK53_RS04665	0.58	-1.9
1,088,397	-		LRK53_RS04665	0.58	-1.6
1,088,397	-		LRK53_RS04665	0.58	-1.0
1,088,397	-		LRK53_RS04665	0.58	-1.6
1,088,397	-		LRK53_RS04665	0.58	+0.1
1,088,397	-		LRK53_RS04665	0.58	+2.9
1,088,397	-		LRK53_RS04665	0.58	+0.3
1,088,441	+		LRK53_RS04665	0.60	+0.3
1,088,442	-		LRK53_RS04665	0.61	-1.7
1,088,442	-		LRK53_RS04665	0.61	+1.3
1,088,442	-		LRK53_RS04665	0.61	+1.6
1,088,442	-		LRK53_RS04665	0.61	-0.5
1,088,442	-		LRK53_RS04665	0.61	-2.0
1,088,717	+		LRK53_RS04665	0.73	+2.6
1,088,717	+		LRK53_RS04665	0.73	-0.2
1,088,717	+		LRK53_RS04665	0.73	-0.7
1,088,718	-		LRK53_RS04665	0.73	-0.8
1,088,718	-		LRK53_RS04665	0.73	+1.7
1,088,831	+		LRK53_RS04665	0.79	-3.2
1,088,832	-		LRK53_RS04665	0.79	-0.7
1,088,870	+		LRK53_RS04665	0.81	-0.0
1,088,870	+		LRK53_RS04665	0.81	+1.3
1,088,870	+		LRK53_RS04665	0.81	+0.5
1,088,870	+		LRK53_RS04665	0.81	-3.1
1,088,870	+		LRK53_RS04665	0.81	+0.7
1,088,870	+		LRK53_RS04665	0.81	-0.9
1,088,870	+		LRK53_RS04665	0.81	-1.3
1,088,870	+		LRK53_RS04665	0.81	+1.7
1,088,870	+		LRK53_RS04665	0.81	+1.7
1,088,870	+		LRK53_RS04665	0.81	-1.0
1,088,870	+		LRK53_RS04665	0.81	+0.8
1,088,870	+		LRK53_RS04665	0.81	-0.7
1,088,871	-		LRK53_RS04665	0.81	-0.3
1,088,871	-		LRK53_RS04665	0.81	-1.0
1,088,871	-		LRK53_RS04665	0.81	+2.3
1,088,871	-		LRK53_RS04665	0.81	+1.3
1,088,871	-		LRK53_RS04665	0.81	+1.3
1,088,871	-		LRK53_RS04665	0.81	+1.3
1,088,871	-		LRK53_RS04665	0.81	-0.3
1,088,871	-		LRK53_RS04665	0.81	-2.0
1,088,871	-		LRK53_RS04665	0.81	-0.1
1,088,871	-		LRK53_RS04665	0.81	-0.6
1,088,891	+		LRK53_RS04665	0.82	-0.7
1,088,891	+		LRK53_RS04665	0.82	+1.3
1,088,891	+		LRK53_RS04665	0.82	+0.5
1,088,891	+		LRK53_RS04665	0.82	-0.6
1,088,891	+		LRK53_RS04665	0.82	-0.7
1,088,892	-		LRK53_RS04665	0.82	-1.3
1,088,892	-		LRK53_RS04665	0.82	+0.5
1,088,892	-		LRK53_RS04665	0.82	-0.3
1,088,892	-		LRK53_RS04665	0.82	-1.0
1,088,892	-		LRK53_RS04665	0.82	-0.3
1,088,892	-		LRK53_RS04665	0.82	+0.7
1,088,892	-		LRK53_RS04665	0.82	+0.5
1,088,892	-		LRK53_RS04665	0.82	-1.1
1,088,892	-		LRK53_RS04665	0.82	-0.9
1,088,892	-		LRK53_RS04665	0.82	+0.5
1,089,113	+				-0.5
1,089,113	+				+0.7
1,089,113	+				+1.3
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1,089,185	+				-0.7
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1,089,185	+				-2.0
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1,089,677	+		LRK53_RS04670	0.59	+1.0
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1,090,125	+		LRK53_RS04675	0.37	-2.4
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1,090,267	+		LRK53_RS04675	0.58	-0.5
1,090,267	+		LRK53_RS04675	0.58	-1.1
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1,090,268	-		LRK53_RS04675	0.58	-0.1
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1,090,268	-		LRK53_RS04675	0.58	-1.5
1,090,268	-		LRK53_RS04675	0.58	-1.3
1,090,268	-		LRK53_RS04675	0.58	-0.0