Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04335

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
1,005,897	+				-0.8
1,005,897	+				-1.2
1,005,897	+				-2.2
1,005,897	+				+0.3
1,005,897	+				+1.3
1,005,897	+				+1.3
1,005,897	+				-0.7
1,005,897	+				+0.3
1,005,897	+				-2.1
1,005,897	+				-0.5
1,005,897	+				-0.0
1,005,897	+				+0.3
1,005,897	+				+1.3
1,005,897	+				+0.9
1,005,897	+				-2.0
1,005,897	+				-0.1
1,005,897	+				-2.0
1,005,897	+				+0.0
1,005,897	+				-1.7
1,005,897	+				-0.5
1,005,897	+				+0.3
1,005,897	+				+0.0
1,005,897	+				-1.1
1,005,897	+				-2.7
1,005,897	+				+1.3
1,005,897	+				-0.6
1,005,897	+				-0.5
1,005,897	+				+1.6
1,005,897	+				+1.3
1,005,897	+				+2.9
1,005,897	+				-0.3
1,005,897	+				+0.5
1,005,897	+				+1.3
1,005,897	+				-1.1
1,005,898	-				+2.9
1,005,898	-				-1.3
1,005,898	-				-0.7
1,005,898	-				-0.1
1,005,898	-				+0.0
1,005,898	-				+2.3
1,005,898	-				-0.5
1,005,898	-				+0.8
1,005,898	-				+0.3
1,005,898	-				-1.7
1,005,898	-				+1.3
1,005,898	-				-0.3
1,005,898	-				+0.3
1,005,898	-				+1.6
1,005,898	-				-1.1
1,005,898	-				-1.3
1,005,898	-				-0.5
1,005,898	-				-0.5
1,005,898	-				+1.3
1,005,898	-				-0.7
1,005,898	-				-0.3
1,005,898	-				-2.0
1,005,898	-				-1.3
1,005,898	-				-1.5
1,005,898	-				-1.9
1,005,898	-				-0.4
1,005,898	-				+0.7
1,005,898	-				-0.3
1,005,898	-				-0.4
1,005,898	-				+1.3
1,005,899	+				+1.6
1,005,900	-				-0.2
1,005,900	-				+0.9
1,005,900	-				+0.3
1,005,900	-				-0.3
1,005,951	+		LRK53_RS04330	0.36	-0.5
1,005,951	+		LRK53_RS04330	0.36	-1.5
1,005,951	+		LRK53_RS04330	0.36	+1.3
1,005,951	+		LRK53_RS04330	0.36	+0.4
1,005,951	+		LRK53_RS04330	0.36	+0.2
1,005,951	+		LRK53_RS04330	0.36	-1.0
1,005,951	+		LRK53_RS04330	0.36	+0.8
1,005,951	+		LRK53_RS04330	0.36	-1.5
1,005,951	+		LRK53_RS04330	0.36	-0.9
1,005,951	+		LRK53_RS04330	0.36	-0.2
1,005,951	+		LRK53_RS04330	0.36	-0.9
1,005,951	+		LRK53_RS04330	0.36	-1.3
1,005,951	+		LRK53_RS04330	0.36	+0.3
1,005,951	+		LRK53_RS04330	0.36	+0.1
1,005,952	-		LRK53_RS04330	0.36	-0.7
1,005,952	-		LRK53_RS04330	0.36	+0.5
1,005,952	-		LRK53_RS04330	0.36	-0.7
1,005,952	-		LRK53_RS04330	0.36	-1.1
1,005,952	-		LRK53_RS04330	0.36	-0.5
1,005,952	-		LRK53_RS04330	0.36	+1.6
1,005,952	-		LRK53_RS04330	0.36	-0.8
1,005,952	-		LRK53_RS04330	0.36	-0.4
1,005,952	-		LRK53_RS04330	0.36	-1.1
1,005,952	-		LRK53_RS04330	0.36	-1.7
1,005,952	-		LRK53_RS04330	0.36	-0.3
1,005,952	-		LRK53_RS04330	0.36	-0.3
1,005,990	+		LRK53_RS04330	0.59	-0.2
1,005,990	+		LRK53_RS04330	0.59	-1.1
1,005,990	+		LRK53_RS04330	0.59	-1.2
1,005,990	+		LRK53_RS04330	0.59	+0.7
1,005,990	+		LRK53_RS04330	0.59	+0.3
1,005,990	+		LRK53_RS04330	0.59	-0.3
1,005,990	+		LRK53_RS04330	0.59	-1.2
1,005,990	+		LRK53_RS04330	0.59	-1.3
1,005,990	+		LRK53_RS04330	0.59	+0.7
1,005,990	+		LRK53_RS04330	0.59	+0.1
1,005,990	+		LRK53_RS04330	0.59	+1.3
1,005,990	+		LRK53_RS04330	0.59	-0.5
1,005,990	+		LRK53_RS04330	0.59	-1.7
1,005,990	+		LRK53_RS04330	0.59	-1.0
1,005,990	+		LRK53_RS04330	0.59	+1.7
1,005,990	+		LRK53_RS04330	0.59	+3.6
1,005,990	+		LRK53_RS04330	0.59	+1.3
1,005,990	+		LRK53_RS04330	0.59	-1.2
1,005,990	+		LRK53_RS04330	0.59	-0.2
1,005,991	-		LRK53_RS04330	0.60	-0.7
1,005,991	-		LRK53_RS04330	0.60	+1.3
1,005,991	-		LRK53_RS04330	0.60	-0.1
1,005,991	-		LRK53_RS04330	0.60	-1.0
1,005,991	-		LRK53_RS04330	0.60	+0.5
1,005,991	-		LRK53_RS04330	0.60	-0.8
1,005,991	-		LRK53_RS04330	0.60	-0.1
1,005,991	-		LRK53_RS04330	0.60	-0.4
1,005,991	-		LRK53_RS04330	0.60	+1.7
1,005,991	-		LRK53_RS04330	0.60	+1.4
1,005,991	-		LRK53_RS04330	0.60	+0.5
1,005,991	-		LRK53_RS04330	0.60	+0.0
1,005,991	-		LRK53_RS04330	0.60	-0.5
1,005,991	-		LRK53_RS04330	0.60	+0.6
1,005,991	-		LRK53_RS04330	0.60	+0.8
1,005,991	-		LRK53_RS04330	0.60	-0.3
1,005,991	-		LRK53_RS04330	0.60	-0.3
1,005,991	-		LRK53_RS04330	0.60	-0.7
1,006,029	+		LRK53_RS04330	0.82	+0.3
1,006,029	+		LRK53_RS04330	0.82	+1.3
1,006,030	-		LRK53_RS04330	0.83	+0.3
1,006,064	+				+0.3
1,006,064	+				-1.4
1,006,064	+				+1.3
1,006,064	+				-0.7
1,006,064	+				-1.1
1,006,064	+				-0.1
1,006,064	+				-0.4
1,006,064	+				-1.6
1,006,064	+				-1.2
1,006,064	+				-1.2
1,006,064	+				-0.5
1,006,064	+				+1.9
1,006,064	+				+1.4
1,006,064	+				-1.9
1,006,064	+				-0.2
1,006,064	+				-0.2
1,006,064	+				-1.1
1,006,064	+				-0.3
1,006,064	+				+0.5
1,006,064	+				-0.1
1,006,065	-				+1.3
1,006,065	-				-0.9
1,006,065	-				-1.7
1,006,065	-				+0.7
1,006,065	-				-1.7
1,006,065	-				-1.7
1,006,065	-				-1.7
1,006,065	-				-1.0
1,006,065	-				+1.3
1,006,065	-				-1.1
1,006,065	-				-0.3
1,006,065	-				+0.4
1,006,065	-				-0.5
1,006,065	-				-1.9
1,006,090	+				+0.9
1,006,090	+				-0.3
1,006,090	+				-1.1
1,006,090	+				+0.9
1,006,090	+				+0.4
1,006,090	+				+0.3
1,006,091	-				+2.3
1,006,091	-				+1.3
1,006,091	-				-0.3
1,006,091	-				-0.2
1,006,106	+				-0.7
1,006,106	+				-0.5
1,006,106	+				-0.2
1,006,106	+				-1.2
1,006,106	+				-0.3
1,006,106	+				-0.0
1,006,106	+				-0.3
1,006,106	+				-0.3
1,006,106	+				-0.3
1,006,106	+				+0.5
1,006,106	+				-0.6
1,006,107	-				-0.9
1,006,107	-				+0.9
1,006,107	-				-0.6
1,006,107	-				-1.2
1,006,107	-				-0.1
1,006,107	-				+0.3
1,006,107	-				-1.2
1,006,107	-				-0.8
1,006,107	-				+0.1
1,006,107	-				+0.8
1,006,118	+				-0.9
1,006,118	+				+1.3
1,006,119	-				+0.1
1,006,119	-				-0.9
1,006,119	-				-0.3
1,006,162	+				-2.1
1,006,163	-				+0.9
1,006,177	+				-0.1
1,006,177	+				-3.4
1,006,177	+				+0.3
1,006,177	+				-0.1
1,006,177	+				-0.7
1,006,177	+				-1.7
1,006,177	+				-0.1
1,006,177	+				-2.4
1,006,178	-				-0.1
1,006,178	-				+2.3
1,006,178	-				+2.9
1,006,178	-				-0.5
1,006,178	-				-1.3
1,006,202	-				-0.3
1,006,202	-				-1.9
1,006,202	-				-1.5
1,006,202	-				-1.2
1,006,202	-				-1.1
1,006,202	-				-0.3
1,006,202	-				-1.0
1,006,202	-				+1.0
1,006,218	+				-1.9
1,006,218	+				+0.5
1,006,218	+				-1.5
1,006,218	+				-1.1
1,006,218	+				+0.1
1,006,218	+				-0.7
1,006,218	+				+0.7
1,006,218	+				-0.6
1,006,218	+				-0.3
1,006,218	+				-1.1
1,006,218	+				-0.5
1,006,218	+				+0.2
1,006,218	+				-0.6
1,006,218	+				-1.8
1,006,218	+				-0.6
1,006,218	+				-1.3
1,006,218	+				+0.6
1,006,218	+				-2.5
1,006,218	+				-1.5
1,006,219	-				-0.1
1,006,219	-				+0.7
1,006,219	-				+0.0
1,006,219	-				-1.1
1,006,219	-				+0.3
1,006,219	-				+0.7
1,006,219	-				-1.5
1,006,219	-				-2.2
1,006,219	-				-1.6
1,006,219	-				-1.1
1,006,219	-				-0.1
1,006,219	-				+0.1
1,006,219	-				-0.6
1,006,219	-				-1.5
1,006,219	-				-1.2
1,006,219	-				-0.4
1,006,237	-				-1.4
1,006,255	+				+0.3
1,006,256	-				-0.0
1,006,256	-				+1.3
1,006,276	+				-0.9
1,006,276	+				+0.5
1,006,276	+				-1.5
1,006,277	-				-1.5
1,006,277	-				-0.3
1,006,277	-				+0.9
1,006,277	-				-0.4
1,006,277	-				-0.7
1,006,277	-				+0.3
1,006,286	+				+0.0
1,006,286	+				-1.3
1,006,286	+				+1.3
1,006,286	+				+0.0
1,006,286	+				+0.9
1,006,286	+				-1.6
1,006,286	+				-0.1
1,006,286	+				+1.3
1,006,286	+				-1.1
1,006,286	+				-0.3
1,006,286	+				+0.3
1,006,286	+				-1.3
1,006,286	+				-0.6
1,006,286	+				+0.6
1,006,286	+				-0.8
1,006,286	+				-0.1
1,006,286	+				+1.3
1,006,286	+				+1.6
1,006,287	-				-1.4
1,006,287	-				-0.5
1,006,287	-				-0.5
1,006,287	-				-0.2
1,006,287	-				-1.1
1,006,287	-				+0.9
1,006,287	-				+0.7
1,006,287	-				-0.6
1,006,287	-				-0.8
1,006,287	-				-1.6
1,006,287	-				+0.9
1,006,287	-				+0.3
1,006,287	-				-0.5
1,006,287	-				-0.1
1,006,287	-				-1.7
1,006,287	-				-1.5
1,006,287	-				-0.7
1,006,287	-				+1.3
1,006,288	+				-0.4
1,006,288	+				+2.1
1,006,288	+				+0.3
1,006,289	-				-0.6
1,006,289	-				-0.3
1,006,289	-				+2.6
1,006,289	-				+1.3
1,006,289	-				+0.3
1,006,327	+				+0.3
1,006,327	+				+0.9
1,006,331	+				+1.6
1,006,331	+				+1.9
1,006,331	+				-0.7
1,006,331	+				-1.1
1,006,331	+				-1.2
1,006,331	+				-1.1
1,006,331	+				+0.9
1,006,331	+				-0.8
1,006,331	+				-0.1
1,006,331	+				-2.3
1,006,331	+				-0.2
1,006,331	+				-0.3
1,006,331	+				-1.3
1,006,331	+				+0.4
1,006,332	-				+0.2
1,006,332	-				-1.4
1,006,332	-				+0.3
1,006,332	-				-0.2
1,006,332	-				+0.3
1,006,335	+				-2.1
1,006,335	+				+0.7
1,006,335	+				-0.7
1,006,335	+				-1.4
1,006,335	+				+0.4
1,006,336	-				-1.0
1,006,336	-				+0.1
1,006,336	-				+0.5
1,006,336	-				+0.7
1,006,336	-				+0.3
1,006,336	-				+1.3
1,006,339	+				-0.5
1,006,339	+				-0.6
1,006,339	+				+1.3
1,006,339	+				-1.1
1,006,339	+				+0.0
1,006,339	+				+0.9
1,006,340	-				-0.8
1,006,340	-				-0.7
1,006,340	-				-0.4
1,006,340	-				-0.1
1,006,340	-				+0.8
1,006,340	-				-2.5
1,006,340	-				-2.4
1,006,340	-				-1.1
1,006,340	-				-1.1
1,006,342	+				-0.3
1,006,342	+				+1.3
1,006,342	+				+0.7
1,006,342	+				-0.2
1,006,342	+				-2.2
1,006,342	+				-1.4
1,006,342	+				+0.9
1,006,343	-				-0.4
1,006,343	-				+2.9
1,006,343	-				-0.1
1,006,343	-				-1.5
1,006,343	-				-0.1
1,006,343	-				-0.6
1,006,343	-				+1.9
1,006,343	-				-0.9
1,006,343	-				+2.3
1,006,343	-				+0.3
1,006,343	-				-1.3
1,006,343	-				+0.3
1,006,346	+				-1.9
1,006,347	-				-0.2
1,006,347	-				-0.1
1,006,361	+				-1.5
1,006,361	+				+0.4
1,006,361	+				-0.5
1,006,361	+				-0.8
1,006,361	+				+1.0
1,006,361	+				+0.5
1,006,362	-				-1.8
1,006,362	-				-0.5
1,006,490	+				+0.7
1,006,490	+				+0.0
1,006,490	+				+1.2
1,006,490	+				+0.7
1,006,490	+				+0.6
1,006,490	+				-0.7
1,006,490	+				-1.1
1,006,490	+				-0.7
1,006,490	+				+1.9
1,006,490	+				-1.0
1,006,490	+				-0.5
1,006,490	+				+0.2
1,006,490	+				-0.4
1,006,490	+				-1.2
1,006,490	+				-1.1
1,006,490	+				+0.7
1,006,490	+				-1.3
1,006,490	+				+0.3
1,006,490	+				-1.5
1,006,490	+				-1.1
1,006,491	-				+0.4
1,006,491	-				-0.7
1,006,491	-				+0.9
1,006,491	-				+0.4
1,006,491	-				-0.1
1,006,491	-				+0.0
1,006,491	-				+0.3
1,006,491	-				-0.5
1,006,491	-				-1.1
1,006,491	-				-1.5
1,006,491	-				-2.3
1,006,491	-				-0.2
1,006,491	-				+1.3
1,006,491	-				-1.1
1,006,491	-				-0.8
1,006,491	-				-0.2
1,006,491	-				-1.9
1,006,544	+				-0.7
1,006,548	+				+1.7
1,006,548	+				-1.5
1,006,549	-				+0.5
1,006,549	-				+1.3
1,006,604	+				-0.7
1,006,604	+				-0.2
1,006,604	+				+1.3
1,006,605	-				-0.5
1,006,605	-				-1.0
1,006,613	+				-0.6
1,006,614	-				-0.5
1,006,643	+				-0.9
1,006,663	+				-0.7
1,006,663	+				-0.9
1,006,663	+				+0.4
1,006,663	+				-0.3
1,006,663	+				-0.4
1,006,663	+				-1.3
1,006,663	+				+0.4
1,006,663	+				+1.9
1,006,664	-				-0.1
1,006,664	-				+1.3
1,006,664	-				-0.9
1,006,664	-				-0.3
1,006,664	-				+0.9
1,006,664	-				+1.3
1,006,664	-				+3.6
1,006,664	-				-0.5
1,006,664	-				-1.3
1,006,664	-				-0.3
1,006,676	+				-0.7
1,006,676	+				-0.3
1,006,676	+				+2.3
1,006,676	+				-1.3
1,006,676	+				+0.3
1,006,676	+				-1.8
1,006,676	+				-0.8
1,006,676	+				+0.7
1,006,676	+				+1.9
1,006,677	-				+0.3
1,006,677	-				-0.3
1,006,677	-				-0.3
1,006,677	-				+0.3
1,006,677	-				-0.4
1,006,677	-				+0.6
1,006,677	-				+0.4
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1,006,855	+				-2.1
1,006,855	+				-1.5
1,006,856	-				-0.3
1,006,945	+		LRK53_RS04335	0.17	-0.3
1,006,945	+		LRK53_RS04335	0.17	+0.9
1,006,945	+		LRK53_RS04335	0.17	-0.9
1,006,945	+		LRK53_RS04335	0.17	+2.3
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1,006,945	+		LRK53_RS04335	0.17	-0.4
1,006,945	+		LRK53_RS04335	0.17	-0.6
1,006,945	+		LRK53_RS04335	0.17	-1.1
1,006,945	+		LRK53_RS04335	0.17	+0.3
1,006,945	+		LRK53_RS04335	0.17	+0.0
1,006,945	+		LRK53_RS04335	0.17	+0.3
1,006,945	+		LRK53_RS04335	0.17	-2.5
1,006,945	+		LRK53_RS04335	0.17	+0.3
1,006,946	-		LRK53_RS04335	0.17	+0.3
1,006,946	-		LRK53_RS04335	0.17	+0.4
1,006,946	-		LRK53_RS04335	0.17	+1.0
1,006,946	-		LRK53_RS04335	0.17	-0.2
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1,006,946	-		LRK53_RS04335	0.17	-1.1
1,006,946	-		LRK53_RS04335	0.17	+0.2
1,006,946	-		LRK53_RS04335	0.17	+0.2
1,006,946	-		LRK53_RS04335	0.17	-0.9
1,006,946	-		LRK53_RS04335	0.17	-1.7
1,006,946	-		LRK53_RS04335	0.17	-0.1
1,006,955	-		LRK53_RS04335	0.19	-0.7
1,007,111	+		LRK53_RS04335	0.49	-1.1
1,007,111	+		LRK53_RS04335	0.49	-0.3
1,007,111	+		LRK53_RS04335	0.49	+0.3
1,007,111	+		LRK53_RS04335	0.49	-0.0
1,007,112	-		LRK53_RS04335	0.49	+1.3
1,007,112	-		LRK53_RS04335	0.49	+0.5
1,007,112	-		LRK53_RS04335	0.49	-1.6
1,007,163	-		LRK53_RS04335	0.59	-0.5
1,007,170	+		LRK53_RS04335	0.60	-0.7
1,007,197	+		LRK53_RS04335	0.65	-0.3
1,007,197	+		LRK53_RS04335	0.65	-0.4
1,007,197	+		LRK53_RS04335	0.65	-0.1
1,007,197	+		LRK53_RS04335	0.65	-0.3
1,007,197	+		LRK53_RS04335	0.65	-0.5
1,007,197	+		LRK53_RS04335	0.65	+1.3
1,007,197	+		LRK53_RS04335	0.65	+1.4
1,007,198	-		LRK53_RS04335	0.65	-0.9
1,007,198	-		LRK53_RS04335	0.65	-0.1
1,007,198	-		LRK53_RS04335	0.65	-0.7
1,007,198	-		LRK53_RS04335	0.65	-0.5
1,007,281	+		LRK53_RS04335	0.81	-2.3
1,007,281	+		LRK53_RS04335	0.81	-0.7
1,007,281	+		LRK53_RS04335	0.81	+0.3
1,007,281	+		LRK53_RS04335	0.81	+0.1
1,007,281	+		LRK53_RS04335	0.81	+0.0
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1,007,281	+		LRK53_RS04335	0.81	-0.3
1,007,281	+		LRK53_RS04335	0.81	-1.3
1,007,281	+		LRK53_RS04335	0.81	+1.3
1,007,282	-		LRK53_RS04335	0.81	+0.1
1,007,282	-		LRK53_RS04335	0.81	-0.3
1,007,282	-		LRK53_RS04335	0.81	-0.9
1,007,282	-		LRK53_RS04335	0.81	-0.4
1,007,282	-		LRK53_RS04335	0.81	+1.5
1,007,282	-		LRK53_RS04335	0.81	-0.7
1,007,282	-		LRK53_RS04335	0.81	+1.7
1,007,282	-		LRK53_RS04335	0.81	-0.3
1,007,404	+				+1.9
1,007,664	+				+3.3
1,007,664	+				+1.3
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1,007,665	-				-0.4
1,007,665	-				-0.5
1,007,665	-				-0.5
1,007,670	+				-2.2
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1,007,671	-				-1.6
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1,007,671	-				+0.3
1,007,671	-				+1.7
1,007,671	-				+0.9
1,007,671	-				-0.2
1,007,675	-				-1.5
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1,007,689	+				-0.8
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1,007,706	+				-1.1
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1,007,706	+				-2.9
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1,007,706	+				-1.2
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1,007,706	+				+0.3
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1,007,707	-				+0.7
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1,007,707	-				-2.9
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