Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04115 and LRK53_RS04120 are separated by 62 nucleotides LRK53_RS04120 and LRK53_RS04125 are separated by 266 nucleotides LRK53_RS04125 and LRK53_RS04130 are separated by 136 nucleotides LRK53_RS04130 and LRK53_RS04135 are separated by 49 nucleotides
LRK53_RS04115: LRK53_RS04115 - hypothetical protein, at 965,215 to 965,949
_RS04115
LRK53_RS04120: LRK53_RS04120 - DUF6491 family protein, at 966,012 to 966,464
_RS04120
LRK53_RS04125: LRK53_RS04125 - ferritin-like domain-containing protein, at 966,731 to 967,552
_RS04125
LRK53_RS04130: LRK53_RS04130 - universal stress protein, at 967,689 to 968,105
_RS04130
LRK53_RS04135: LRK53_RS04135 - glycine zipper 2TM domain-containing protein, at 968,155 to 968,325
_RS04135
Position (kb) 966
967
968 Strain fitness (log2 ratio) -2
-1
0
1
2 at 965.838 kb on + strand, within LRK53_RS04115 at 965.838 kb on + strand, within LRK53_RS04115 at 965.838 kb on + strand, within LRK53_RS04115 at 965.839 kb on - strand, within LRK53_RS04115 at 965.888 kb on - strand at 965.888 kb on - strand at 965.888 kb on - strand at 965.888 kb on - strand at 965.947 kb on + strand at 965.947 kb on + strand at 965.947 kb on + strand at 965.948 kb on - strand at 965.948 kb on - strand at 965.948 kb on - strand at 965.948 kb on - strand at 965.948 kb on - strand at 965.948 kb on - strand at 965.948 kb on - strand at 965.955 kb on + strand at 965.986 kb on + strand at 965.986 kb on + strand at 965.986 kb on + strand at 965.986 kb on + strand at 965.986 kb on + strand at 965.986 kb on + strand at 965.986 kb on + strand at 965.986 kb on + strand at 965.987 kb on - strand at 965.987 kb on - strand at 965.987 kb on - strand at 965.987 kb on - strand at 965.987 kb on - strand at 966.081 kb on + strand, within LRK53_RS04120 at 966.081 kb on + strand, within LRK53_RS04120 at 966.081 kb on + strand, within LRK53_RS04120 at 966.081 kb on + strand, within LRK53_RS04120 at 966.082 kb on - strand, within LRK53_RS04120 at 966.082 kb on - strand, within LRK53_RS04120 at 966.082 kb on - strand, within LRK53_RS04120 at 966.114 kb on + strand, within LRK53_RS04120 at 966.114 kb on + strand, within LRK53_RS04120 at 966.114 kb on + strand, within LRK53_RS04120 at 966.114 kb on + strand, within LRK53_RS04120 at 966.114 kb on + strand, within LRK53_RS04120 at 966.114 kb on + strand, within LRK53_RS04120 at 966.114 kb on + strand, within LRK53_RS04120 at 966.115 kb on - strand, within LRK53_RS04120 at 966.115 kb on - strand, within LRK53_RS04120 at 966.115 kb on - strand, within LRK53_RS04120 at 966.115 kb on - strand, within LRK53_RS04120 at 966.165 kb on + strand, within LRK53_RS04120 at 966.165 kb on + strand, within LRK53_RS04120 at 966.165 kb on + strand, within LRK53_RS04120 at 966.165 kb on + strand, within LRK53_RS04120 at 966.165 kb on + strand, within LRK53_RS04120 at 966.166 kb on - strand, within LRK53_RS04120 at 966.204 kb on + strand, within LRK53_RS04120 at 966.204 kb on + strand, within LRK53_RS04120 at 966.204 kb on + strand, within LRK53_RS04120 at 966.204 kb on + strand, within LRK53_RS04120 at 966.204 kb on + strand, within LRK53_RS04120 at 966.204 kb on + strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.205 kb on - strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.206 kb on + strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 966.207 kb on - strand, within LRK53_RS04120 at 967.047 kb on + strand, within LRK53_RS04125 at 967.056 kb on + strand, within LRK53_RS04125 at 967.056 kb on + strand, within LRK53_RS04125 at 967.062 kb on + strand, within LRK53_RS04125 at 967.062 kb on + strand, within LRK53_RS04125 at 967.062 kb on + strand, within LRK53_RS04125 at 967.062 kb on + strand, within LRK53_RS04125 at 967.062 kb on + strand, within LRK53_RS04125 at 967.063 kb on - strand, within LRK53_RS04125 at 967.063 kb on - strand, within LRK53_RS04125 at 967.063 kb on - strand, within LRK53_RS04125 at 967.063 kb on - strand, within LRK53_RS04125 at 967.063 kb on - strand, within LRK53_RS04125 at 967.242 kb on + strand, within LRK53_RS04125 at 967.242 kb on + strand, within LRK53_RS04125 at 967.243 kb on - strand, within LRK53_RS04125 at 967.305 kb on + strand, within LRK53_RS04125 at 967.305 kb on + strand, within LRK53_RS04125 at 967.305 kb on + strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.306 kb on - strand, within LRK53_RS04125 at 967.413 kb on + strand, within LRK53_RS04125 at 967.413 kb on + strand, within LRK53_RS04125 at 967.413 kb on + strand, within LRK53_RS04125 at 967.413 kb on + strand, within LRK53_RS04125 at 967.414 kb on - strand, within LRK53_RS04125 at 967.568 kb on - strand at 967.638 kb on + strand at 967.638 kb on + strand at 967.638 kb on + strand at 967.638 kb on + strand at 967.639 kb on - strand at 967.639 kb on - strand at 967.639 kb on - strand at 967.639 kb on - strand at 967.639 kb on - strand at 967.639 kb on - strand at 967.639 kb on - strand at 967.782 kb on - strand, within LRK53_RS04130 at 967.782 kb on - strand, within LRK53_RS04130 at 968.001 kb on + strand, within LRK53_RS04130 at 968.001 kb on + strand, within LRK53_RS04130 at 968.001 kb on + strand, within LRK53_RS04130 at 968.001 kb on + strand, within LRK53_RS04130 at 968.001 kb on + strand, within LRK53_RS04130 at 968.001 kb on + strand, within LRK53_RS04130 at 968.001 kb on + strand, within LRK53_RS04130 at 968.002 kb on - strand, within LRK53_RS04130 at 968.002 kb on - strand, within LRK53_RS04130 at 968.002 kb on - strand, within LRK53_RS04130 at 968.081 kb on - strand at 968.081 kb on - strand at 968.081 kb on - strand at 968.095 kb on + strand at 968.095 kb on + strand at 968.095 kb on + strand at 968.095 kb on + strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.096 kb on - strand at 968.188 kb on - strand, within LRK53_RS04135 at 968.234 kb on + strand, within LRK53_RS04135 at 968.443 kb on - strand at 968.552 kb on + strand at 968.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 965,838 + LRK53_RS04115 0.85 -1.7 965,838 + LRK53_RS04115 0.85 -0.3 965,838 + LRK53_RS04115 0.85 -0.4 965,839 - LRK53_RS04115 0.85 -0.6 965,888 - -0.4 965,888 - -1.3 965,888 - -0.7 965,888 - -0.1 965,947 + -1.9 965,947 + -0.7 965,947 + +0.2 965,948 - +1.6 965,948 - -1.3 965,948 - -2.2 965,948 - -1.5 965,948 - -0.8 965,948 - +0.3 965,948 - -0.7 965,955 + -0.7 965,986 + +0.1 965,986 + -1.3 965,986 + -0.7 965,986 + +0.8 965,986 + +1.3 965,986 + +1.3 965,986 + -0.9 965,986 + -0.0 965,987 - +0.4 965,987 - +0.3 965,987 - -0.7 965,987 - +0.0 965,987 - -1.6 966,081 + LRK53_RS04120 0.15 +0.3 966,081 + LRK53_RS04120 0.15 +0.3 966,081 + LRK53_RS04120 0.15 +1.3 966,081 + LRK53_RS04120 0.15 +0.3 966,082 - LRK53_RS04120 0.15 +2.1 966,082 - LRK53_RS04120 0.15 -0.7 966,082 - LRK53_RS04120 0.15 -0.0 966,114 + LRK53_RS04120 0.23 -0.0 966,114 + LRK53_RS04120 0.23 -1.5 966,114 + LRK53_RS04120 0.23 -0.4 966,114 + LRK53_RS04120 0.23 -1.3 966,114 + LRK53_RS04120 0.23 -0.5 966,114 + LRK53_RS04120 0.23 +0.6 966,114 + LRK53_RS04120 0.23 -1.1 966,115 - LRK53_RS04120 0.23 +1.3 966,115 - LRK53_RS04120 0.23 -1.2 966,115 - LRK53_RS04120 0.23 -1.3 966,115 - LRK53_RS04120 0.23 +0.6 966,165 + LRK53_RS04120 0.34 +1.9 966,165 + LRK53_RS04120 0.34 -0.2 966,165 + LRK53_RS04120 0.34 -0.5 966,165 + LRK53_RS04120 0.34 -0.7 966,165 + LRK53_RS04120 0.34 -0.1 966,166 - LRK53_RS04120 0.34 -0.1 966,204 + LRK53_RS04120 0.42 +0.9 966,204 + LRK53_RS04120 0.42 -0.9 966,204 + LRK53_RS04120 0.42 +0.8 966,204 + LRK53_RS04120 0.42 -0.2 966,204 + LRK53_RS04120 0.42 +1.3 966,204 + LRK53_RS04120 0.42 -2.2 966,205 - LRK53_RS04120 0.43 -1.4 966,205 - LRK53_RS04120 0.43 -2.1 966,205 - LRK53_RS04120 0.43 +0.7 966,205 - LRK53_RS04120 0.43 -0.7 966,205 - LRK53_RS04120 0.43 -2.2 966,205 - LRK53_RS04120 0.43 -2.3 966,205 - LRK53_RS04120 0.43 -1.6 966,205 - LRK53_RS04120 0.43 -1.3 966,206 + LRK53_RS04120 0.43 -2.4 966,206 + LRK53_RS04120 0.43 +0.3 966,206 + LRK53_RS04120 0.43 -1.9 966,206 + LRK53_RS04120 0.43 +1.3 966,206 + LRK53_RS04120 0.43 -0.2 966,206 + LRK53_RS04120 0.43 -0.0 966,206 + LRK53_RS04120 0.43 -0.6 966,206 + LRK53_RS04120 0.43 -1.3 966,206 + LRK53_RS04120 0.43 +0.4 966,206 + LRK53_RS04120 0.43 +0.6 966,206 + LRK53_RS04120 0.43 -2.0 966,206 + LRK53_RS04120 0.43 -0.3 966,206 + LRK53_RS04120 0.43 -0.7 966,206 + LRK53_RS04120 0.43 +1.3 966,206 + LRK53_RS04120 0.43 -1.7 966,206 + LRK53_RS04120 0.43 +0.3 966,206 + LRK53_RS04120 0.43 -0.7 966,206 + LRK53_RS04120 0.43 -0.0 966,206 + LRK53_RS04120 0.43 -0.7 966,206 + LRK53_RS04120 0.43 -0.7 966,207 - LRK53_RS04120 0.43 -0.1 966,207 - LRK53_RS04120 0.43 -0.3 966,207 - LRK53_RS04120 0.43 +1.3 966,207 - LRK53_RS04120 0.43 +0.8 966,207 - LRK53_RS04120 0.43 -1.6 966,207 - LRK53_RS04120 0.43 +0.3 966,207 - LRK53_RS04120 0.43 +0.5 966,207 - LRK53_RS04120 0.43 +0.3 966,207 - LRK53_RS04120 0.43 -2.2 966,207 - LRK53_RS04120 0.43 +1.3 966,207 - LRK53_RS04120 0.43 +0.9 967,047 + LRK53_RS04125 0.38 +1.7 967,056 + LRK53_RS04125 0.40 -0.7 967,056 + LRK53_RS04125 0.40 -2.4 967,062 + LRK53_RS04125 0.40 -0.1 967,062 + LRK53_RS04125 0.40 -0.3 967,062 + LRK53_RS04125 0.40 -1.5 967,062 + LRK53_RS04125 0.40 +0.9 967,062 + LRK53_RS04125 0.40 -0.6 967,063 - LRK53_RS04125 0.40 -0.7 967,063 - LRK53_RS04125 0.40 +1.3 967,063 - LRK53_RS04125 0.40 -0.0 967,063 - LRK53_RS04125 0.40 -0.9 967,063 - LRK53_RS04125 0.40 +0.3 967,242 + LRK53_RS04125 0.62 -0.1 967,242 + LRK53_RS04125 0.62 +0.3 967,243 - LRK53_RS04125 0.62 +1.3 967,305 + LRK53_RS04125 0.70 -0.7 967,305 + LRK53_RS04125 0.70 +1.3 967,305 + LRK53_RS04125 0.70 -1.0 967,306 - LRK53_RS04125 0.70 -0.8 967,306 - LRK53_RS04125 0.70 -0.3 967,306 - LRK53_RS04125 0.70 -2.2 967,306 - LRK53_RS04125 0.70 -2.2 967,306 - LRK53_RS04125 0.70 -0.9 967,306 - LRK53_RS04125 0.70 -2.6 967,306 - LRK53_RS04125 0.70 -2.7 967,306 - LRK53_RS04125 0.70 -1.0 967,413 + LRK53_RS04125 0.83 +0.0 967,413 + LRK53_RS04125 0.83 -0.0 967,413 + LRK53_RS04125 0.83 -0.3 967,413 + LRK53_RS04125 0.83 +1.3 967,414 - LRK53_RS04125 0.83 -0.0 967,568 - -0.7 967,638 + -0.7 967,638 + -1.5 967,638 + -1.0 967,638 + -1.0 967,639 - +0.5 967,639 - +0.7 967,639 - -1.0 967,639 - -1.3 967,639 - -2.0 967,639 - -1.2 967,639 - -2.3 967,782 - LRK53_RS04130 0.22 +0.5 967,782 - LRK53_RS04130 0.22 -1.0 968,001 + LRK53_RS04130 0.75 -1.2 968,001 + LRK53_RS04130 0.75 +1.3 968,001 + LRK53_RS04130 0.75 +0.9 968,001 + LRK53_RS04130 0.75 +0.3 968,001 + LRK53_RS04130 0.75 -0.9 968,001 + LRK53_RS04130 0.75 -0.7 968,001 + LRK53_RS04130 0.75 -0.7 968,002 - LRK53_RS04130 0.75 +0.3 968,002 - LRK53_RS04130 0.75 +0.9 968,002 - LRK53_RS04130 0.75 +0.3 968,081 - +0.9 968,081 - +0.3 968,081 - -1.0 968,095 + +0.3 968,095 + +1.3 968,095 + +0.3 968,095 + -0.6 968,096 - -1.7 968,096 - -0.8 968,096 - +0.3 968,096 - -1.0 968,096 - -0.6 968,096 - -0.0 968,096 - -0.2 968,096 - -0.6 968,096 - +0.1 968,188 - LRK53_RS04135 0.19 -0.5 968,234 + LRK53_RS04135 0.46 -0.7 968,443 - -0.5 968,552 + -1.3 968,552 + +1.1
Or see this region's nucleotide sequence