Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03385

Experiment: NLDM_defined; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03380 and LRK53_RS03385 are separated by 123 nucleotidesLRK53_RS03385 and LRK53_RS03390 are separated by 63 nucleotidesLRK53_RS03390 and LRK53_RS03395 overlap by 4 nucleotides LRK53_RS03380: LRK53_RS03380 - malate synthase A, at 800,907 to 802,499 _RS03380 LRK53_RS03385: LRK53_RS03385 - LysR family transcriptional regulator, at 802,623 to 803,657 _RS03385 LRK53_RS03390: LRK53_RS03390 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 803,721 to 804,317 _RS03390 LRK53_RS03395: LRK53_RS03395 - aminoacyl-tRNA hydrolase, at 804,314 to 804,736 _RS03395 Position (kb) 802 803 804Strain fitness (log2 ratio) -2 -1 0 1 2 3at 801.649 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.862 kb on + strand, within LRK53_RS03380at 801.863 kb on - strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.869 kb on - strand, within LRK53_RS03380at 802.036 kb on + strand, within LRK53_RS03380at 802.036 kb on + strand, within LRK53_RS03380at 802.037 kb on - strand, within LRK53_RS03380at 802.214 kb on + strand, within LRK53_RS03380at 802.436 kb on - strandat 802.580 kb on - strandat 802.663 kb on + strandat 802.664 kb on - strandat 802.722 kb on + strandat 802.722 kb on + strandat 802.722 kb on + strandat 802.722 kb on + strandat 802.723 kb on - strandat 802.723 kb on - strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.926 kb on + strand, within LRK53_RS03385at 802.926 kb on + strand, within LRK53_RS03385at 802.926 kb on + strand, within LRK53_RS03385at 802.926 kb on + strand, within LRK53_RS03385at 802.927 kb on - strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.301 kb on + strand, within LRK53_RS03385at 803.337 kb on + strand, within LRK53_RS03385at 803.337 kb on + strand, within LRK53_RS03385at 803.337 kb on + strand, within LRK53_RS03385at 803.338 kb on - strand, within LRK53_RS03385at 803.380 kb on - strand, within LRK53_RS03385at 803.380 kb on - strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.517 kb on + strand, within LRK53_RS03385at 803.517 kb on + strand, within LRK53_RS03385at 803.517 kb on + strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.518 kb on - strand, within LRK53_RS03385at 803.628 kb on + strandat 803.629 kb on - strandat 803.629 kb on - strandat 803.755 kb on + strandat 803.755 kb on + strandat 803.755 kb on + strandat 803.755 kb on + strandat 803.755 kb on + strandat 803.756 kb on - strandat 803.756 kb on - strandat 803.756 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
remove
801,649 + LRK53_RS03380 0.47 -0.1
801,661 + LRK53_RS03380 0.47 -0.5
801,661 + LRK53_RS03380 0.47 -0.7
801,661 + LRK53_RS03380 0.47 +0.3
801,661 + LRK53_RS03380 0.47 +1.3
801,661 + LRK53_RS03380 0.47 -0.8
801,661 + LRK53_RS03380 0.47 +0.2
801,661 + LRK53_RS03380 0.47 -0.3
801,661 + LRK53_RS03380 0.47 +0.5
801,661 + LRK53_RS03380 0.47 -1.7
801,661 + LRK53_RS03380 0.47 +0.4
801,661 + LRK53_RS03380 0.47 +0.3
801,661 + LRK53_RS03380 0.47 -1.3
801,662 - LRK53_RS03380 0.47 -0.2
801,662 - LRK53_RS03380 0.47 -1.0
801,662 - LRK53_RS03380 0.47 -0.4
801,662 - LRK53_RS03380 0.47 -0.7
801,662 - LRK53_RS03380 0.47 -1.3
801,662 - LRK53_RS03380 0.47 -0.0
801,662 - LRK53_RS03380 0.47 +1.3
801,662 - LRK53_RS03380 0.47 -0.3
801,662 - LRK53_RS03380 0.47 -0.3
801,862 + LRK53_RS03380 0.60 -0.6
801,863 - LRK53_RS03380 0.60 -1.0
801,868 + LRK53_RS03380 0.60 -1.3
801,868 + LRK53_RS03380 0.60 +1.5
801,868 + LRK53_RS03380 0.60 +0.5
801,868 + LRK53_RS03380 0.60 +0.3
801,868 + LRK53_RS03380 0.60 -0.7
801,869 - LRK53_RS03380 0.60 +0.3
802,036 + LRK53_RS03380 0.71 -0.3
802,036 + LRK53_RS03380 0.71 -1.4
802,037 - LRK53_RS03380 0.71 -0.3
802,214 + LRK53_RS03380 0.82 -0.3
802,436 - +0.3
802,580 - +1.3
802,663 + -0.2
802,664 - -0.6
802,722 + +0.1
802,722 + +0.7
802,722 + -0.3
802,722 + -0.4
802,723 - -0.8
802,723 - -0.0
802,725 + -1.6
802,725 + +0.7
802,725 + +0.7
802,725 + -2.0
802,725 + -2.3
802,725 + -0.4
802,725 + -1.1
802,725 + -0.1
802,725 + +0.6
802,726 - -1.2
802,726 - -0.5
802,726 - -1.2
802,726 - -0.9
802,726 - +2.3
802,726 - +0.6
802,726 - -0.0
802,726 - +1.7
802,726 - -0.7
802,726 - -0.7
802,726 - +1.3
802,926 + LRK53_RS03385 0.29 -0.8
802,926 + LRK53_RS03385 0.29 -0.3
802,926 + LRK53_RS03385 0.29 +0.1
802,926 + LRK53_RS03385 0.29 +0.3
802,927 - LRK53_RS03385 0.29 -1.4
803,046 + LRK53_RS03385 0.41 -0.1
803,046 + LRK53_RS03385 0.41 -0.1
803,046 + LRK53_RS03385 0.41 +0.6
803,046 + LRK53_RS03385 0.41 +1.5
803,046 + LRK53_RS03385 0.41 +0.3
803,046 + LRK53_RS03385 0.41 -1.7
803,046 + LRK53_RS03385 0.41 -2.5
803,046 + LRK53_RS03385 0.41 -1.7
803,047 - LRK53_RS03385 0.41 -0.9
803,047 - LRK53_RS03385 0.41 +0.3
803,047 - LRK53_RS03385 0.41 -0.0
803,047 - LRK53_RS03385 0.41 +0.8
803,047 - LRK53_RS03385 0.41 -2.4
803,047 - LRK53_RS03385 0.41 +2.0
803,047 - LRK53_RS03385 0.41 -1.0
803,065 + LRK53_RS03385 0.43 -2.0
803,065 + LRK53_RS03385 0.43 +0.3
803,065 + LRK53_RS03385 0.43 -1.9
803,065 + LRK53_RS03385 0.43 -0.9
803,223 + LRK53_RS03385 0.58 -0.0
803,223 + LRK53_RS03385 0.58 -0.8
803,223 + LRK53_RS03385 0.58 +0.1
803,223 + LRK53_RS03385 0.58 -1.4
803,223 + LRK53_RS03385 0.58 -0.2
803,224 - LRK53_RS03385 0.58 +0.3
803,224 - LRK53_RS03385 0.58 -0.3
803,224 - LRK53_RS03385 0.58 -1.5
803,224 - LRK53_RS03385 0.58 +0.6
803,224 - LRK53_RS03385 0.58 -0.3
803,224 - LRK53_RS03385 0.58 -0.1
803,301 + LRK53_RS03385 0.66 -0.8
803,337 + LRK53_RS03385 0.69 -0.7
803,337 + LRK53_RS03385 0.69 -0.3
803,337 + LRK53_RS03385 0.69 -0.7
803,338 - LRK53_RS03385 0.69 -1.0
803,380 - LRK53_RS03385 0.73 +0.3
803,380 - LRK53_RS03385 0.73 -1.9
803,424 + LRK53_RS03385 0.77 -0.9
803,424 + LRK53_RS03385 0.77 -0.7
803,424 + LRK53_RS03385 0.77 -0.6
803,424 + LRK53_RS03385 0.77 -1.7
803,424 + LRK53_RS03385 0.77 -0.1
803,424 + LRK53_RS03385 0.77 -1.0
803,424 + LRK53_RS03385 0.77 -0.7
803,424 + LRK53_RS03385 0.77 -0.4
803,424 + LRK53_RS03385 0.77 +0.3
803,424 + LRK53_RS03385 0.77 -0.9
803,424 + LRK53_RS03385 0.77 -0.3
803,425 - LRK53_RS03385 0.77 -1.0
803,425 - LRK53_RS03385 0.77 -0.7
803,425 - LRK53_RS03385 0.77 -0.0
803,425 - LRK53_RS03385 0.77 -1.2
803,425 - LRK53_RS03385 0.77 +0.9
803,425 - LRK53_RS03385 0.77 -0.5
803,425 - LRK53_RS03385 0.77 -0.5
803,425 - LRK53_RS03385 0.77 -1.2
803,425 - LRK53_RS03385 0.77 +1.1
803,425 - LRK53_RS03385 0.77 -1.5
803,425 - LRK53_RS03385 0.77 -0.6
803,425 - LRK53_RS03385 0.77 +0.3
803,425 - LRK53_RS03385 0.77 -1.0
803,517 + LRK53_RS03385 0.86 -1.3
803,517 + LRK53_RS03385 0.86 -0.3
803,517 + LRK53_RS03385 0.86 +0.0
803,518 - LRK53_RS03385 0.86 -1.4
803,518 - LRK53_RS03385 0.86 +1.3
803,518 - LRK53_RS03385 0.86 +0.5
803,518 - LRK53_RS03385 0.86 +0.9
803,518 - LRK53_RS03385 0.86 -0.5
803,518 - LRK53_RS03385 0.86 +0.6
803,518 - LRK53_RS03385 0.86 -1.9
803,518 - LRK53_RS03385 0.86 +1.3
803,518 - LRK53_RS03385 0.86 +2.9
803,628 + -0.0
803,629 - -2.2
803,629 - +0.3
803,755 + +0.7
803,755 + -1.1
803,755 + -1.3
803,755 + -0.9
803,755 + +1.3
803,756 - +1.3
803,756 - -1.5
803,756 - -1.0

Or see this region's nucleotide sequence