Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03375

Experiment: NLDM_defined; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03370 and LRK53_RS03375 are separated by 279 nucleotidesLRK53_RS03375 and LRK53_RS03380 are separated by 212 nucleotides LRK53_RS03370: LRK53_RS03370 - YifB family Mg chelatase-like AAA ATPase, at 797,623 to 799,116 _RS03370 LRK53_RS03375: LRK53_RS03375 - isocitrate lyase, at 799,396 to 800,694 _RS03375 LRK53_RS03380: LRK53_RS03380 - malate synthase A, at 800,907 to 802,499 _RS03380 Position (kb) 799 800 801Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 798.676 kb on + strand, within LRK53_RS03370at 799.009 kb on + strandat 799.009 kb on + strandat 799.009 kb on + strandat 799.009 kb on + strandat 799.009 kb on + strandat 799.009 kb on + strandat 799.010 kb on - strandat 799.010 kb on - strandat 799.010 kb on - strandat 799.010 kb on - strandat 799.010 kb on - strandat 799.114 kb on + strandat 799.114 kb on + strandat 799.114 kb on + strandat 799.114 kb on + strandat 799.114 kb on + strandat 799.114 kb on + strandat 799.114 kb on + strandat 799.115 kb on - strandat 799.115 kb on - strandat 799.115 kb on - strandat 799.115 kb on - strandat 799.115 kb on - strandat 799.118 kb on + strandat 799.118 kb on + strandat 799.118 kb on + strandat 799.119 kb on - strandat 799.119 kb on - strandat 799.119 kb on - strandat 799.229 kb on - strandat 799.232 kb on + strandat 799.233 kb on - strandat 799.252 kb on + strandat 799.252 kb on + strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.253 kb on - strandat 799.311 kb on - strandat 799.311 kb on - strandat 799.499 kb on + strandat 799.634 kb on + strand, within LRK53_RS03375at 799.634 kb on + strand, within LRK53_RS03375at 799.634 kb on + strand, within LRK53_RS03375at 799.634 kb on + strand, within LRK53_RS03375at 799.635 kb on - strand, within LRK53_RS03375at 799.635 kb on - strand, within LRK53_RS03375at 799.635 kb on - strand, within LRK53_RS03375at 799.679 kb on + strand, within LRK53_RS03375at 799.679 kb on + strand, within LRK53_RS03375at 799.679 kb on + strand, within LRK53_RS03375at 799.679 kb on + strand, within LRK53_RS03375at 799.680 kb on - strand, within LRK53_RS03375at 799.680 kb on - strand, within LRK53_RS03375at 799.766 kb on + strand, within LRK53_RS03375at 799.766 kb on + strand, within LRK53_RS03375at 799.766 kb on + strand, within LRK53_RS03375at 799.766 kb on + strand, within LRK53_RS03375at 799.767 kb on - strand, within LRK53_RS03375at 799.767 kb on - strand, within LRK53_RS03375at 799.767 kb on - strand, within LRK53_RS03375at 799.767 kb on - strand, within LRK53_RS03375at 799.868 kb on + strand, within LRK53_RS03375at 799.869 kb on - strand, within LRK53_RS03375at 800.363 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.609 kb on + strandat 800.609 kb on + strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.714 kb on + strandat 800.901 kb on + strandat 800.901 kb on + strandat 800.920 kb on + strandat 801.217 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.447 kb on + strand, within LRK53_RS03380at 801.448 kb on - strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.566 kb on - strand, within LRK53_RS03380at 801.566 kb on - strand, within LRK53_RS03380at 801.649 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
remove
798,676 + LRK53_RS03370 0.70 -0.7
799,009 + -1.3
799,009 + +1.7
799,009 + -1.7
799,009 + -0.4
799,009 + -1.0
799,009 + -1.5
799,010 - -0.9
799,010 - -1.0
799,010 - -1.8
799,010 - +0.3
799,010 - -0.3
799,114 + +0.6
799,114 + +1.9
799,114 + -2.2
799,114 + -1.0
799,114 + -0.3
799,114 + +1.3
799,114 + +0.6
799,115 - +0.3
799,115 - -0.7
799,115 - -0.9
799,115 - +0.1
799,115 - -0.3
799,118 + -1.0
799,118 + -0.4
799,118 + -0.7
799,119 - -0.6
799,119 - -1.0
799,119 - -1.0
799,229 - -0.3
799,232 + -1.5
799,233 - -2.2
799,252 + +2.3
799,252 + +1.3
799,253 - -0.5
799,253 - -0.7
799,253 - -1.5
799,253 - -1.0
799,253 - +0.3
799,253 - +0.3
799,253 - +2.3
799,253 - -0.5
799,253 - +0.3
799,311 - +0.4
799,311 - -0.1
799,499 + -0.7
799,634 + LRK53_RS03375 0.18 +0.6
799,634 + LRK53_RS03375 0.18 -1.0
799,634 + LRK53_RS03375 0.18 +1.3
799,634 + LRK53_RS03375 0.18 +0.6
799,635 - LRK53_RS03375 0.18 -0.9
799,635 - LRK53_RS03375 0.18 -1.7
799,635 - LRK53_RS03375 0.18 +1.9
799,679 + LRK53_RS03375 0.22 -0.3
799,679 + LRK53_RS03375 0.22 -0.2
799,679 + LRK53_RS03375 0.22 -0.2
799,679 + LRK53_RS03375 0.22 -0.6
799,680 - LRK53_RS03375 0.22 -2.8
799,680 - LRK53_RS03375 0.22 -0.2
799,766 + LRK53_RS03375 0.28 -2.2
799,766 + LRK53_RS03375 0.28 +0.1
799,766 + LRK53_RS03375 0.28 -0.7
799,766 + LRK53_RS03375 0.28 +0.3
799,767 - LRK53_RS03375 0.29 -0.3
799,767 - LRK53_RS03375 0.29 +1.3
799,767 - LRK53_RS03375 0.29 -1.3
799,767 - LRK53_RS03375 0.29 -0.1
799,868 + LRK53_RS03375 0.36 +0.7
799,869 - LRK53_RS03375 0.36 +0.1
800,363 + LRK53_RS03375 0.74 -1.0
800,381 + LRK53_RS03375 0.76 +1.3
800,381 + LRK53_RS03375 0.76 +0.7
800,381 + LRK53_RS03375 0.76 +0.9
800,381 + LRK53_RS03375 0.76 -0.7
800,381 + LRK53_RS03375 0.76 -0.0
800,381 + LRK53_RS03375 0.76 +0.7
800,381 + LRK53_RS03375 0.76 +0.2
800,381 + LRK53_RS03375 0.76 -0.7
800,381 + LRK53_RS03375 0.76 -0.3
800,381 + LRK53_RS03375 0.76 -0.3
800,381 + LRK53_RS03375 0.76 +1.9
800,382 - LRK53_RS03375 0.76 -0.6
800,382 - LRK53_RS03375 0.76 +0.7
800,382 - LRK53_RS03375 0.76 -0.1
800,382 - LRK53_RS03375 0.76 -0.2
800,382 - LRK53_RS03375 0.76 +0.3
800,382 - LRK53_RS03375 0.76 +0.4
800,382 - LRK53_RS03375 0.76 +1.7
800,382 - LRK53_RS03375 0.76 +1.3
800,382 - LRK53_RS03375 0.76 +2.3
800,382 - LRK53_RS03375 0.76 +1.6
800,432 + LRK53_RS03375 0.80 -0.8
800,432 + LRK53_RS03375 0.80 -0.7
800,432 + LRK53_RS03375 0.80 +1.3
800,432 + LRK53_RS03375 0.80 +0.9
800,432 + LRK53_RS03375 0.80 -0.0
800,432 + LRK53_RS03375 0.80 -1.7
800,433 - LRK53_RS03375 0.80 -1.0
800,433 - LRK53_RS03375 0.80 -0.7
800,433 - LRK53_RS03375 0.80 -0.3
800,433 - LRK53_RS03375 0.80 +0.8
800,433 - LRK53_RS03375 0.80 +0.6
800,433 - LRK53_RS03375 0.80 +1.7
800,433 - LRK53_RS03375 0.80 +0.0
800,433 - LRK53_RS03375 0.80 +1.9
800,433 - LRK53_RS03375 0.80 +0.9
800,433 - LRK53_RS03375 0.80 +0.7
800,433 - LRK53_RS03375 0.80 -0.3
800,433 - LRK53_RS03375 0.80 -0.7
800,433 - LRK53_RS03375 0.80 -0.5
800,609 + -0.7
800,609 + +0.1
800,610 - +2.5
800,610 - -0.0
800,610 - -2.3
800,610 - +0.6
800,610 - +0.1
800,714 + +1.0
800,901 + -0.7
800,901 + -0.3
800,920 + -1.4
801,217 + LRK53_RS03380 0.19 -0.1
801,349 + LRK53_RS03380 0.28 -0.3
801,349 + LRK53_RS03380 0.28 +1.9
801,349 + LRK53_RS03380 0.28 -0.6
801,349 + LRK53_RS03380 0.28 -0.4
801,349 + LRK53_RS03380 0.28 +0.6
801,349 + LRK53_RS03380 0.28 -0.7
801,349 + LRK53_RS03380 0.28 +0.3
801,349 + LRK53_RS03380 0.28 -0.6
801,349 + LRK53_RS03380 0.28 -0.3
801,349 + LRK53_RS03380 0.28 +1.5
801,349 + LRK53_RS03380 0.28 +1.3
801,350 - LRK53_RS03380 0.28 -0.3
801,350 - LRK53_RS03380 0.28 -0.7
801,350 - LRK53_RS03380 0.28 -2.7
801,350 - LRK53_RS03380 0.28 +0.1
801,350 - LRK53_RS03380 0.28 -3.1
801,350 - LRK53_RS03380 0.28 +0.3
801,350 - LRK53_RS03380 0.28 -0.3
801,350 - LRK53_RS03380 0.28 -0.9
801,350 - LRK53_RS03380 0.28 -0.3
801,350 - LRK53_RS03380 0.28 -3.2
801,350 - LRK53_RS03380 0.28 -1.5
801,350 - LRK53_RS03380 0.28 -0.7
801,350 - LRK53_RS03380 0.28 -0.0
801,350 - LRK53_RS03380 0.28 -0.9
801,350 - LRK53_RS03380 0.28 +0.1
801,447 + LRK53_RS03380 0.34 -0.5
801,448 - LRK53_RS03380 0.34 -1.3
801,565 + LRK53_RS03380 0.41 +0.7
801,565 + LRK53_RS03380 0.41 -0.7
801,565 + LRK53_RS03380 0.41 -0.1
801,565 + LRK53_RS03380 0.41 -0.5
801,565 + LRK53_RS03380 0.41 +1.3
801,565 + LRK53_RS03380 0.41 +0.3
801,565 + LRK53_RS03380 0.41 +1.3
801,565 + LRK53_RS03380 0.41 +0.3
801,565 + LRK53_RS03380 0.41 -0.3
801,565 + LRK53_RS03380 0.41 -0.7
801,565 + LRK53_RS03380 0.41 +0.5
801,566 - LRK53_RS03380 0.41 +0.3
801,566 - LRK53_RS03380 0.41 -1.4
801,649 + LRK53_RS03380 0.47 -0.1
801,661 + LRK53_RS03380 0.47 -0.5
801,661 + LRK53_RS03380 0.47 -0.7
801,661 + LRK53_RS03380 0.47 +0.3
801,661 + LRK53_RS03380 0.47 +1.3
801,661 + LRK53_RS03380 0.47 -0.8
801,661 + LRK53_RS03380 0.47 +0.2
801,661 + LRK53_RS03380 0.47 -0.3
801,661 + LRK53_RS03380 0.47 +0.5
801,661 + LRK53_RS03380 0.47 -1.7
801,661 + LRK53_RS03380 0.47 +0.4
801,661 + LRK53_RS03380 0.47 +0.3
801,661 + LRK53_RS03380 0.47 -1.3
801,662 - LRK53_RS03380 0.47 -0.2
801,662 - LRK53_RS03380 0.47 -1.0
801,662 - LRK53_RS03380 0.47 -0.4
801,662 - LRK53_RS03380 0.47 -0.7
801,662 - LRK53_RS03380 0.47 -1.3
801,662 - LRK53_RS03380 0.47 -0.0
801,662 - LRK53_RS03380 0.47 +1.3
801,662 - LRK53_RS03380 0.47 -0.3
801,662 - LRK53_RS03380 0.47 -0.3

Or see this region's nucleotide sequence