Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01975 and LRK53_RS01980 are separated by 56 nucleotides LRK53_RS01980 and LRK53_RS01985 are separated by 23 nucleotides
LRK53_RS01975: LRK53_RS01975 - DNA cytosine methyltransferase, at 457,241 to 458,281
_RS01975
LRK53_RS01980: LRK53_RS01980 - very short patch repair endonuclease, at 458,338 to 458,739
_RS01980
LRK53_RS01985: LRK53_RS01985 - DISARM system SNF2-like helicase DrmD, at 458,763 to 461,981
_RS01985
Position (kb) 458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 457.361 kb on + strand, within LRK53_RS01975 at 457.362 kb on - strand, within LRK53_RS01975 at 457.369 kb on + strand, within LRK53_RS01975 at 457.369 kb on + strand, within LRK53_RS01975 at 457.369 kb on + strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.370 kb on - strand, within LRK53_RS01975 at 457.435 kb on - strand, within LRK53_RS01975 at 457.435 kb on - strand, within LRK53_RS01975 at 457.496 kb on + strand, within LRK53_RS01975 at 457.496 kb on + strand, within LRK53_RS01975 at 457.496 kb on + strand, within LRK53_RS01975 at 457.508 kb on + strand, within LRK53_RS01975 at 457.509 kb on - strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.547 kb on + strand, within LRK53_RS01975 at 457.548 kb on - strand, within LRK53_RS01975 at 457.614 kb on + strand, within LRK53_RS01975 at 457.648 kb on + strand, within LRK53_RS01975 at 457.648 kb on + strand, within LRK53_RS01975 at 457.668 kb on - strand, within LRK53_RS01975 at 457.703 kb on + strand, within LRK53_RS01975 at 457.703 kb on + strand, within LRK53_RS01975 at 457.703 kb on + strand, within LRK53_RS01975 at 457.704 kb on - strand, within LRK53_RS01975 at 457.760 kb on - strand, within LRK53_RS01975 at 457.822 kb on - strand, within LRK53_RS01975 at 457.822 kb on - strand, within LRK53_RS01975 at 457.822 kb on - strand, within LRK53_RS01975 at 457.822 kb on - strand, within LRK53_RS01975 at 457.991 kb on + strand, within LRK53_RS01975 at 457.991 kb on + strand, within LRK53_RS01975 at 457.992 kb on - strand, within LRK53_RS01975 at 458.003 kb on + strand, within LRK53_RS01975 at 458.003 kb on + strand, within LRK53_RS01975 at 458.004 kb on - strand, within LRK53_RS01975 at 458.054 kb on + strand, within LRK53_RS01975 at 458.054 kb on + strand, within LRK53_RS01975 at 458.054 kb on + strand, within LRK53_RS01975 at 458.054 kb on + strand, within LRK53_RS01975 at 458.054 kb on + strand, within LRK53_RS01975 at 458.054 kb on + strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.055 kb on - strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.103 kb on + strand, within LRK53_RS01975 at 458.104 kb on - strand, within LRK53_RS01975 at 458.104 kb on - strand, within LRK53_RS01975 at 458.147 kb on + strand, within LRK53_RS01975 at 458.147 kb on + strand, within LRK53_RS01975 at 458.147 kb on + strand, within LRK53_RS01975 at 458.147 kb on + strand, within LRK53_RS01975 at 458.147 kb on + strand, within LRK53_RS01975 at 458.148 kb on - strand, within LRK53_RS01975 at 458.148 kb on - strand, within LRK53_RS01975 at 458.148 kb on - strand, within LRK53_RS01975 at 458.148 kb on - strand, within LRK53_RS01975 at 458.148 kb on - strand, within LRK53_RS01975 at 458.148 kb on - strand, within LRK53_RS01975 at 458.148 kb on - strand, within LRK53_RS01975 at 458.206 kb on + strand at 458.207 kb on - strand at 458.207 kb on - strand at 458.220 kb on + strand at 458.290 kb on + strand at 458.290 kb on + strand at 458.290 kb on + strand at 458.291 kb on - strand at 458.291 kb on - strand at 458.291 kb on - strand at 458.291 kb on - strand at 458.322 kb on + strand at 458.337 kb on + strand at 458.361 kb on + strand at 458.362 kb on - strand at 458.413 kb on + strand, within LRK53_RS01980 at 458.413 kb on + strand, within LRK53_RS01980 at 458.413 kb on + strand, within LRK53_RS01980 at 458.414 kb on - strand, within LRK53_RS01980 at 458.414 kb on - strand, within LRK53_RS01980 at 458.425 kb on + strand, within LRK53_RS01980 at 458.425 kb on + strand, within LRK53_RS01980 at 458.425 kb on + strand, within LRK53_RS01980 at 458.426 kb on - strand, within LRK53_RS01980 at 458.426 kb on - strand, within LRK53_RS01980 at 458.426 kb on - strand, within LRK53_RS01980 at 458.636 kb on + strand, within LRK53_RS01980 at 458.636 kb on + strand, within LRK53_RS01980 at 458.637 kb on - strand, within LRK53_RS01980 at 458.637 kb on - strand, within LRK53_RS01980 at 458.637 kb on - strand, within LRK53_RS01980 at 458.669 kb on + strand, within LRK53_RS01980 at 458.670 kb on - strand, within LRK53_RS01980 at 458.670 kb on - strand, within LRK53_RS01980 at 458.670 kb on - strand, within LRK53_RS01980 at 458.670 kb on - strand, within LRK53_RS01980 at 458.706 kb on + strand at 458.721 kb on + strand at 458.721 kb on + strand at 458.721 kb on + strand at 458.721 kb on + strand at 458.722 kb on - strand at 458.722 kb on - strand at 458.722 kb on - strand at 458.737 kb on + strand at 458.737 kb on + strand at 458.737 kb on + strand at 458.737 kb on + strand at 458.738 kb on - strand at 458.738 kb on - strand at 458.738 kb on - strand at 458.738 kb on - strand at 458.738 kb on - strand at 458.738 kb on - strand at 458.742 kb on + strand at 458.742 kb on + strand at 458.742 kb on + strand at 458.743 kb on - strand at 458.743 kb on - strand at 458.743 kb on - strand at 458.743 kb on - strand at 458.743 kb on - strand at 458.808 kb on + strand at 458.808 kb on + strand at 458.808 kb on + strand at 458.808 kb on + strand at 458.808 kb on + strand at 458.808 kb on + strand at 458.808 kb on + strand at 458.808 kb on + strand at 458.809 kb on - strand at 458.809 kb on - strand at 458.809 kb on - strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.836 kb on + strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.837 kb on - strand at 458.839 kb on + strand at 458.839 kb on + strand at 458.839 kb on + strand at 458.839 kb on + strand at 458.845 kb on + strand at 458.845 kb on + strand at 458.845 kb on + strand at 458.845 kb on + strand at 458.846 kb on - strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.934 kb on + strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.935 kb on - strand at 458.962 kb on + strand at 458.962 kb on + strand at 458.962 kb on + strand at 458.962 kb on + strand at 458.963 kb on - strand at 458.963 kb on - strand at 458.967 kb on - strand at 458.967 kb on - strand at 458.967 kb on - strand at 459.164 kb on + strand, within LRK53_RS01985 at 459.164 kb on + strand, within LRK53_RS01985 at 459.164 kb on + strand, within LRK53_RS01985 at 459.165 kb on - strand, within LRK53_RS01985 at 459.165 kb on - strand, within LRK53_RS01985 at 459.165 kb on - strand, within LRK53_RS01985 at 459.430 kb on + strand, within LRK53_RS01985 at 459.444 kb on + strand, within LRK53_RS01985 at 459.444 kb on + strand, within LRK53_RS01985 at 459.444 kb on + strand, within LRK53_RS01985 at 459.444 kb on + strand, within LRK53_RS01985 at 459.444 kb on + strand, within LRK53_RS01985 at 459.444 kb on + strand, within LRK53_RS01985 at 459.444 kb on + strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.445 kb on - strand, within LRK53_RS01985 at 459.574 kb on + strand, within LRK53_RS01985 at 459.574 kb on + strand, within LRK53_RS01985 at 459.575 kb on - strand, within LRK53_RS01985 at 459.575 kb on - strand, within LRK53_RS01985 at 459.575 kb on - strand, within LRK53_RS01985 at 459.654 kb on + strand, within LRK53_RS01985
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 457,361 + LRK53_RS01975 0.12 +0.6 457,362 - LRK53_RS01975 0.12 -0.7 457,369 + LRK53_RS01975 0.12 -1.0 457,369 + LRK53_RS01975 0.12 +0.2 457,369 + LRK53_RS01975 0.12 -0.6 457,370 - LRK53_RS01975 0.12 -0.3 457,370 - LRK53_RS01975 0.12 -0.7 457,370 - LRK53_RS01975 0.12 -0.8 457,370 - LRK53_RS01975 0.12 +0.3 457,370 - LRK53_RS01975 0.12 -1.8 457,370 - LRK53_RS01975 0.12 +1.7 457,370 - LRK53_RS01975 0.12 +0.5 457,370 - LRK53_RS01975 0.12 -0.4 457,370 - LRK53_RS01975 0.12 +0.4 457,435 - LRK53_RS01975 0.19 +0.3 457,435 - LRK53_RS01975 0.19 +0.3 457,496 + LRK53_RS01975 0.24 +1.0 457,496 + LRK53_RS01975 0.24 -0.1 457,496 + LRK53_RS01975 0.24 -0.7 457,508 + LRK53_RS01975 0.26 -0.3 457,509 - LRK53_RS01975 0.26 +0.4 457,547 + LRK53_RS01975 0.29 +0.6 457,547 + LRK53_RS01975 0.29 -0.7 457,547 + LRK53_RS01975 0.29 +0.7 457,547 + LRK53_RS01975 0.29 +0.3 457,547 + LRK53_RS01975 0.29 -0.3 457,547 + LRK53_RS01975 0.29 -2.1 457,547 + LRK53_RS01975 0.29 +0.6 457,547 + LRK53_RS01975 0.29 +0.5 457,547 + LRK53_RS01975 0.29 -0.5 457,548 - LRK53_RS01975 0.29 -1.8 457,614 + LRK53_RS01975 0.36 -0.3 457,648 + LRK53_RS01975 0.39 +0.7 457,648 + LRK53_RS01975 0.39 +1.3 457,668 - LRK53_RS01975 0.41 -0.3 457,703 + LRK53_RS01975 0.44 -2.3 457,703 + LRK53_RS01975 0.44 -2.8 457,703 + LRK53_RS01975 0.44 +0.2 457,704 - LRK53_RS01975 0.44 -0.4 457,760 - LRK53_RS01975 0.50 -0.1 457,822 - LRK53_RS01975 0.56 +0.3 457,822 - LRK53_RS01975 0.56 -1.5 457,822 - LRK53_RS01975 0.56 +0.0 457,822 - LRK53_RS01975 0.56 -0.7 457,991 + LRK53_RS01975 0.72 +1.3 457,991 + LRK53_RS01975 0.72 -0.5 457,992 - LRK53_RS01975 0.72 -1.3 458,003 + LRK53_RS01975 0.73 -1.0 458,003 + LRK53_RS01975 0.73 +0.3 458,004 - LRK53_RS01975 0.73 -0.3 458,054 + LRK53_RS01975 0.78 -1.6 458,054 + LRK53_RS01975 0.78 -0.7 458,054 + LRK53_RS01975 0.78 -0.7 458,054 + LRK53_RS01975 0.78 -1.0 458,054 + LRK53_RS01975 0.78 +0.0 458,054 + LRK53_RS01975 0.78 -0.7 458,055 - LRK53_RS01975 0.78 +0.5 458,055 - LRK53_RS01975 0.78 -1.6 458,055 - LRK53_RS01975 0.78 -0.7 458,055 - LRK53_RS01975 0.78 +0.3 458,055 - LRK53_RS01975 0.78 -0.1 458,055 - LRK53_RS01975 0.78 -0.7 458,055 - LRK53_RS01975 0.78 +1.3 458,055 - LRK53_RS01975 0.78 -0.8 458,055 - LRK53_RS01975 0.78 +0.6 458,055 - LRK53_RS01975 0.78 -1.2 458,103 + LRK53_RS01975 0.83 +1.7 458,103 + LRK53_RS01975 0.83 -1.7 458,103 + LRK53_RS01975 0.83 +0.7 458,103 + LRK53_RS01975 0.83 -2.1 458,103 + LRK53_RS01975 0.83 -0.3 458,103 + LRK53_RS01975 0.83 +0.9 458,103 + LRK53_RS01975 0.83 -0.2 458,103 + LRK53_RS01975 0.83 -0.7 458,103 + LRK53_RS01975 0.83 -1.8 458,104 - LRK53_RS01975 0.83 -0.5 458,104 - LRK53_RS01975 0.83 -0.3 458,147 + LRK53_RS01975 0.87 -0.1 458,147 + LRK53_RS01975 0.87 +0.2 458,147 + LRK53_RS01975 0.87 +0.1 458,147 + LRK53_RS01975 0.87 -1.4 458,147 + LRK53_RS01975 0.87 -0.4 458,148 - LRK53_RS01975 0.87 +0.0 458,148 - LRK53_RS01975 0.87 +0.0 458,148 - LRK53_RS01975 0.87 -1.0 458,148 - LRK53_RS01975 0.87 -0.3 458,148 - LRK53_RS01975 0.87 -0.4 458,148 - LRK53_RS01975 0.87 -2.1 458,148 - LRK53_RS01975 0.87 +0.7 458,206 + -0.3 458,207 - -1.1 458,207 - -0.2 458,220 + -0.7 458,290 + -0.7 458,290 + -0.3 458,290 + -0.3 458,291 - -0.3 458,291 - +0.0 458,291 - +0.7 458,291 - -1.5 458,322 + -0.2 458,337 + -1.5 458,361 + -1.3 458,362 - -0.6 458,413 + LRK53_RS01980 0.19 -1.3 458,413 + LRK53_RS01980 0.19 +0.3 458,413 + LRK53_RS01980 0.19 +0.3 458,414 - LRK53_RS01980 0.19 +0.2 458,414 - LRK53_RS01980 0.19 -0.8 458,425 + LRK53_RS01980 0.22 -1.4 458,425 + LRK53_RS01980 0.22 -2.9 458,425 + LRK53_RS01980 0.22 +1.3 458,426 - LRK53_RS01980 0.22 -0.9 458,426 - LRK53_RS01980 0.22 +1.1 458,426 - LRK53_RS01980 0.22 +0.7 458,636 + LRK53_RS01980 0.74 -0.2 458,636 + LRK53_RS01980 0.74 -2.3 458,637 - LRK53_RS01980 0.74 -1.5 458,637 - LRK53_RS01980 0.74 -0.6 458,637 - LRK53_RS01980 0.74 -1.3 458,669 + LRK53_RS01980 0.82 +0.6 458,670 - LRK53_RS01980 0.83 +0.3 458,670 - LRK53_RS01980 0.83 +0.3 458,670 - LRK53_RS01980 0.83 -1.0 458,670 - LRK53_RS01980 0.83 +0.1 458,706 + -1.3 458,721 + -0.3 458,721 + -0.7 458,721 + -0.0 458,721 + +0.9 458,722 - +1.3 458,722 - -1.7 458,722 - +0.3 458,737 + -0.3 458,737 + -1.9 458,737 + +0.0 458,737 + -1.7 458,738 - -1.3 458,738 - -1.2 458,738 - +1.3 458,738 - -1.0 458,738 - +0.1 458,738 - +1.3 458,742 + +0.7 458,742 + +0.3 458,742 + -0.7 458,743 - -0.8 458,743 - -0.6 458,743 - -0.6 458,743 - -0.7 458,743 - -0.6 458,808 + -1.0 458,808 + +0.6 458,808 + -1.0 458,808 + +2.1 458,808 + -0.3 458,808 + -1.9 458,808 + -0.5 458,808 + +0.1 458,809 - -0.1 458,809 - +0.9 458,809 - -0.3 458,836 + +0.1 458,836 + -3.3 458,836 + -1.7 458,836 + +0.0 458,836 + -1.0 458,836 + +0.6 458,836 + +1.3 458,836 + +0.7 458,836 + +2.3 458,837 - +0.7 458,837 - -0.3 458,837 - -0.0 458,837 - +3.3 458,837 - -1.1 458,837 - +1.1 458,837 - -0.5 458,837 - +0.3 458,837 - -0.4 458,839 + -0.4 458,839 + -1.1 458,839 + -0.5 458,839 + -0.7 458,845 + -0.4 458,845 + -0.6 458,845 + -0.1 458,845 + -0.7 458,846 - -0.7 458,934 + +0.5 458,934 + -1.2 458,934 + +0.3 458,934 + -0.8 458,934 + +1.3 458,934 + -0.1 458,934 + +0.0 458,934 + -1.5 458,934 + -2.3 458,934 + +0.1 458,934 + +0.6 458,934 + +2.3 458,934 + +1.3 458,934 + +1.3 458,934 + +0.6 458,934 + -0.3 458,934 + -1.0 458,934 + +1.3 458,935 - -0.3 458,935 - -0.3 458,935 - -0.9 458,935 - -0.3 458,935 - -1.6 458,935 - -0.3 458,935 - -0.6 458,935 - -1.8 458,935 - -0.8 458,935 - -1.5 458,962 + -1.0 458,962 + -0.8 458,962 + +0.5 458,962 + +0.0 458,963 - +2.3 458,963 - +1.0 458,967 - -0.1 458,967 - -0.3 458,967 - -0.1 459,164 + LRK53_RS01985 0.12 +0.4 459,164 + LRK53_RS01985 0.12 -2.3 459,164 + LRK53_RS01985 0.12 -0.7 459,165 - LRK53_RS01985 0.12 +0.6 459,165 - LRK53_RS01985 0.12 -1.0 459,165 - LRK53_RS01985 0.12 -1.0 459,430 + LRK53_RS01985 0.21 -0.8 459,444 + LRK53_RS01985 0.21 -0.7 459,444 + LRK53_RS01985 0.21 +0.1 459,444 + LRK53_RS01985 0.21 +0.3 459,444 + LRK53_RS01985 0.21 -0.2 459,444 + LRK53_RS01985 0.21 +1.8 459,444 + LRK53_RS01985 0.21 +0.5 459,444 + LRK53_RS01985 0.21 -0.5 459,445 - LRK53_RS01985 0.21 -1.8 459,445 - LRK53_RS01985 0.21 -0.6 459,445 - LRK53_RS01985 0.21 -2.1 459,445 - LRK53_RS01985 0.21 +1.3 459,445 - LRK53_RS01985 0.21 -0.8 459,445 - LRK53_RS01985 0.21 +0.9 459,445 - LRK53_RS01985 0.21 -0.8 459,445 - LRK53_RS01985 0.21 +0.1 459,445 - LRK53_RS01985 0.21 -0.2 459,445 - LRK53_RS01985 0.21 -0.1 459,445 - LRK53_RS01985 0.21 -1.8 459,445 - LRK53_RS01985 0.21 -0.2 459,574 + LRK53_RS01985 0.25 +0.7 459,574 + LRK53_RS01985 0.25 -0.6 459,575 - LRK53_RS01985 0.25 -0.3 459,575 - LRK53_RS01985 0.25 -1.7 459,575 - LRK53_RS01985 0.25 +1.0 459,654 + LRK53_RS01985 0.28 -0.3
Or see this region's nucleotide sequence