Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00320 and LRK53_RS00325 are separated by 194 nucleotides LRK53_RS00325 and LRK53_RS00330 are separated by 70 nucleotides
LRK53_RS00320: LRK53_RS00320 - type I glutamate--ammonia ligase, at 73,153 to 74,562
_RS00320
LRK53_RS00325: LRK53_RS00325 - antirepressor, at 74,757 to 75,602
_RS00325
LRK53_RS00330: LRK53_RS00330 - carbohydrate porin, at 75,673 to 76,980
_RS00330
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 74.549 kb on - strand at 74.680 kb on - strand at 74.680 kb on - strand at 74.709 kb on + strand at 74.709 kb on + strand at 74.709 kb on + strand at 74.709 kb on + strand at 74.709 kb on + strand at 74.709 kb on + strand at 74.709 kb on + strand at 74.710 kb on - strand at 74.710 kb on - strand at 74.710 kb on - strand at 74.710 kb on - strand at 74.710 kb on - strand at 74.710 kb on - strand at 74.767 kb on + strand at 74.767 kb on + strand at 74.767 kb on + strand at 74.767 kb on + strand at 74.768 kb on - strand at 74.768 kb on - strand at 74.768 kb on - strand at 74.768 kb on - strand at 74.768 kb on - strand at 74.768 kb on - strand at 74.768 kb on - strand at 74.806 kb on - strand at 74.877 kb on + strand, within LRK53_RS00325 at 74.878 kb on - strand, within LRK53_RS00325 at 74.896 kb on - strand, within LRK53_RS00325 at 74.945 kb on + strand, within LRK53_RS00325 at 74.955 kb on - strand, within LRK53_RS00325 at 74.955 kb on - strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.991 kb on + strand, within LRK53_RS00325 at 74.992 kb on - strand, within LRK53_RS00325 at 74.992 kb on - strand, within LRK53_RS00325 at 74.992 kb on - strand, within LRK53_RS00325 at 74.992 kb on - strand, within LRK53_RS00325 at 74.992 kb on - strand, within LRK53_RS00325 at 74.992 kb on - strand, within LRK53_RS00325 at 75.103 kb on + strand, within LRK53_RS00325 at 75.103 kb on + strand, within LRK53_RS00325 at 75.103 kb on + strand, within LRK53_RS00325 at 75.103 kb on + strand, within LRK53_RS00325 at 75.104 kb on - strand, within LRK53_RS00325 at 75.104 kb on - strand, within LRK53_RS00325 at 75.104 kb on - strand, within LRK53_RS00325 at 75.104 kb on - strand, within LRK53_RS00325 at 75.250 kb on + strand, within LRK53_RS00325 at 75.250 kb on + strand, within LRK53_RS00325 at 75.250 kb on + strand, within LRK53_RS00325 at 75.250 kb on + strand, within LRK53_RS00325 at 75.250 kb on + strand, within LRK53_RS00325 at 75.250 kb on + strand, within LRK53_RS00325 at 75.251 kb on - strand, within LRK53_RS00325 at 75.251 kb on - strand, within LRK53_RS00325 at 75.251 kb on - strand, within LRK53_RS00325 at 75.251 kb on - strand, within LRK53_RS00325 at 75.555 kb on + strand at 75.555 kb on + strand at 75.555 kb on + strand at 75.555 kb on + strand at 75.555 kb on + strand at 75.556 kb on - strand at 75.556 kb on - strand at 75.556 kb on - strand at 75.600 kb on + strand at 75.601 kb on - strand at 75.692 kb on + strand at 75.693 kb on - strand at 75.693 kb on - strand at 75.693 kb on - strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.745 kb on + strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.746 kb on - strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.749 kb on + strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.750 kb on - strand at 75.798 kb on - strand at 75.821 kb on + strand, within LRK53_RS00330 at 75.821 kb on + strand, within LRK53_RS00330 at 75.821 kb on + strand, within LRK53_RS00330 at 75.822 kb on - strand, within LRK53_RS00330 at 75.956 kb on + strand, within LRK53_RS00330 at 75.956 kb on + strand, within LRK53_RS00330 at 76.064 kb on + strand, within LRK53_RS00330 at 76.064 kb on + strand, within LRK53_RS00330 at 76.064 kb on + strand, within LRK53_RS00330 at 76.065 kb on - strand, within LRK53_RS00330 at 76.065 kb on - strand, within LRK53_RS00330 at 76.088 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.163 kb on + strand, within LRK53_RS00330 at 76.164 kb on - strand, within LRK53_RS00330 at 76.164 kb on - strand, within LRK53_RS00330 at 76.164 kb on - strand, within LRK53_RS00330 at 76.164 kb on - strand, within LRK53_RS00330 at 76.164 kb on - strand, within LRK53_RS00330 at 76.164 kb on - strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.190 kb on + strand, within LRK53_RS00330 at 76.191 kb on - strand, within LRK53_RS00330 at 76.191 kb on - strand, within LRK53_RS00330 at 76.191 kb on - strand, within LRK53_RS00330 at 76.193 kb on + strand, within LRK53_RS00330 at 76.194 kb on - strand, within LRK53_RS00330 at 76.194 kb on - strand, within LRK53_RS00330 at 76.331 kb on + strand, within LRK53_RS00330 at 76.349 kb on + strand, within LRK53_RS00330 at 76.349 kb on + strand, within LRK53_RS00330 at 76.349 kb on + strand, within LRK53_RS00330 at 76.349 kb on + strand, within LRK53_RS00330 at 76.349 kb on + strand, within LRK53_RS00330 at 76.350 kb on - strand, within LRK53_RS00330 at 76.350 kb on - strand, within LRK53_RS00330 at 76.350 kb on - strand, within LRK53_RS00330 at 76.403 kb on + strand, within LRK53_RS00330 at 76.403 kb on + strand, within LRK53_RS00330 at 76.404 kb on - strand, within LRK53_RS00330 at 76.404 kb on - strand, within LRK53_RS00330 at 76.598 kb on + strand, within LRK53_RS00330 at 76.598 kb on + strand, within LRK53_RS00330 at 76.599 kb on - strand, within LRK53_RS00330
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 74,549 - -0.8 74,680 - +0.3 74,680 - +0.6 74,709 + +0.0 74,709 + +0.6 74,709 + -1.2 74,709 + -1.2 74,709 + -2.8 74,709 + -1.8 74,709 + -2.0 74,710 - +0.3 74,710 - +2.3 74,710 - +0.3 74,710 - -2.0 74,710 - -1.2 74,710 - -0.4 74,767 + -0.6 74,767 + +0.7 74,767 + -1.5 74,767 + -2.6 74,768 - -0.1 74,768 - +0.2 74,768 - +0.0 74,768 - -0.8 74,768 - -2.2 74,768 - +3.9 74,768 - -0.2 74,806 - -0.6 74,877 + LRK53_RS00325 0.14 +0.2 74,878 - LRK53_RS00325 0.14 +0.9 74,896 - LRK53_RS00325 0.16 -0.1 74,945 + LRK53_RS00325 0.22 +1.7 74,955 - LRK53_RS00325 0.23 -1.3 74,955 - LRK53_RS00325 0.23 +0.3 74,991 + LRK53_RS00325 0.28 -1.2 74,991 + LRK53_RS00325 0.28 +1.0 74,991 + LRK53_RS00325 0.28 +1.1 74,991 + LRK53_RS00325 0.28 -2.1 74,991 + LRK53_RS00325 0.28 -1.5 74,991 + LRK53_RS00325 0.28 -0.5 74,991 + LRK53_RS00325 0.28 -0.8 74,991 + LRK53_RS00325 0.28 +0.2 74,991 + LRK53_RS00325 0.28 -1.0 74,992 - LRK53_RS00325 0.28 -2.9 74,992 - LRK53_RS00325 0.28 -0.7 74,992 - LRK53_RS00325 0.28 -0.7 74,992 - LRK53_RS00325 0.28 +0.3 74,992 - LRK53_RS00325 0.28 -1.7 74,992 - LRK53_RS00325 0.28 -1.1 75,103 + LRK53_RS00325 0.41 +0.7 75,103 + LRK53_RS00325 0.41 +1.0 75,103 + LRK53_RS00325 0.41 +0.2 75,103 + LRK53_RS00325 0.41 +0.0 75,104 - LRK53_RS00325 0.41 -0.7 75,104 - LRK53_RS00325 0.41 +1.9 75,104 - LRK53_RS00325 0.41 +1.3 75,104 - LRK53_RS00325 0.41 -0.2 75,250 + LRK53_RS00325 0.58 +0.3 75,250 + LRK53_RS00325 0.58 -1.2 75,250 + LRK53_RS00325 0.58 -0.7 75,250 + LRK53_RS00325 0.58 +0.5 75,250 + LRK53_RS00325 0.58 +0.0 75,250 + LRK53_RS00325 0.58 -0.2 75,251 - LRK53_RS00325 0.58 +0.8 75,251 - LRK53_RS00325 0.58 +0.7 75,251 - LRK53_RS00325 0.58 +0.8 75,251 - LRK53_RS00325 0.58 +0.4 75,555 + -0.7 75,555 + -1.8 75,555 + -0.9 75,555 + -2.2 75,555 + -0.3 75,556 - +0.9 75,556 - -0.7 75,556 - +1.3 75,600 + -0.5 75,601 - +0.1 75,692 + +0.5 75,693 - +0.5 75,693 - -0.7 75,693 - +0.8 75,745 + +0.3 75,745 + +2.3 75,745 + +0.3 75,745 + -1.8 75,745 + +0.2 75,745 + -1.2 75,745 + -0.4 75,745 + +1.0 75,745 + -0.5 75,745 + +0.3 75,745 + -2.4 75,745 + -0.5 75,746 - +0.9 75,746 - +1.0 75,746 - -1.7 75,746 - +0.4 75,746 - -0.7 75,746 - -0.2 75,746 - +0.8 75,746 - -1.0 75,746 - -1.0 75,746 - +0.8 75,746 - -0.6 75,746 - -0.0 75,749 + -1.1 75,749 + +1.8 75,749 + -0.5 75,749 + -0.1 75,749 + -2.5 75,749 + -1.6 75,749 + +0.6 75,749 + +0.5 75,749 + -2.8 75,749 + -0.7 75,749 + -1.2 75,749 + -0.5 75,749 + -0.7 75,749 + -1.0 75,749 + +0.3 75,749 + +1.3 75,750 - -0.2 75,750 - -2.5 75,750 - +0.8 75,750 - -0.2 75,750 - -2.1 75,750 - +0.3 75,750 - -0.0 75,750 - -0.3 75,750 - -0.7 75,750 - -0.9 75,750 - -0.9 75,750 - -1.8 75,750 - -0.2 75,750 - +0.3 75,798 - -0.2 75,821 + LRK53_RS00330 0.11 -0.4 75,821 + LRK53_RS00330 0.11 -0.5 75,821 + LRK53_RS00330 0.11 -0.5 75,822 - LRK53_RS00330 0.11 -0.7 75,956 + LRK53_RS00330 0.22 -0.1 75,956 + LRK53_RS00330 0.22 -0.7 76,064 + LRK53_RS00330 0.30 +1.1 76,064 + LRK53_RS00330 0.30 -1.0 76,064 + LRK53_RS00330 0.30 -0.7 76,065 - LRK53_RS00330 0.30 -2.2 76,065 - LRK53_RS00330 0.30 +0.3 76,088 + LRK53_RS00330 0.32 -0.2 76,163 + LRK53_RS00330 0.37 -0.5 76,163 + LRK53_RS00330 0.37 -0.2 76,163 + LRK53_RS00330 0.37 -0.1 76,163 + LRK53_RS00330 0.37 -0.2 76,163 + LRK53_RS00330 0.37 -1.4 76,163 + LRK53_RS00330 0.37 -1.2 76,163 + LRK53_RS00330 0.37 +0.7 76,163 + LRK53_RS00330 0.37 -1.2 76,163 + LRK53_RS00330 0.37 -0.5 76,163 + LRK53_RS00330 0.37 +0.0 76,163 + LRK53_RS00330 0.37 +0.3 76,163 + LRK53_RS00330 0.37 -0.2 76,164 - LRK53_RS00330 0.38 -0.8 76,164 - LRK53_RS00330 0.38 -0.4 76,164 - LRK53_RS00330 0.38 +0.8 76,164 - LRK53_RS00330 0.38 -0.4 76,164 - LRK53_RS00330 0.38 -0.7 76,164 - LRK53_RS00330 0.38 +1.3 76,190 + LRK53_RS00330 0.40 +0.2 76,190 + LRK53_RS00330 0.40 -0.2 76,190 + LRK53_RS00330 0.40 +0.0 76,190 + LRK53_RS00330 0.40 -1.0 76,190 + LRK53_RS00330 0.40 +0.3 76,190 + LRK53_RS00330 0.40 -0.7 76,190 + LRK53_RS00330 0.40 +1.0 76,190 + LRK53_RS00330 0.40 +0.9 76,190 + LRK53_RS00330 0.40 -0.4 76,190 + LRK53_RS00330 0.40 -0.7 76,191 - LRK53_RS00330 0.40 +0.3 76,191 - LRK53_RS00330 0.40 -0.9 76,191 - LRK53_RS00330 0.40 -2.1 76,193 + LRK53_RS00330 0.40 +1.3 76,194 - LRK53_RS00330 0.40 -0.2 76,194 - LRK53_RS00330 0.40 +0.3 76,331 + LRK53_RS00330 0.50 +0.7 76,349 + LRK53_RS00330 0.52 -0.0 76,349 + LRK53_RS00330 0.52 -1.4 76,349 + LRK53_RS00330 0.52 -1.1 76,349 + LRK53_RS00330 0.52 +3.3 76,349 + LRK53_RS00330 0.52 -1.3 76,350 - LRK53_RS00330 0.52 +1.3 76,350 - LRK53_RS00330 0.52 +0.3 76,350 - LRK53_RS00330 0.52 -1.8 76,403 + LRK53_RS00330 0.56 -0.7 76,403 + LRK53_RS00330 0.56 -0.1 76,404 - LRK53_RS00330 0.56 -1.0 76,404 - LRK53_RS00330 0.56 -1.0 76,598 + LRK53_RS00330 0.71 +0.8 76,598 + LRK53_RS00330 0.71 -0.7 76,599 - LRK53_RS00330 0.71 +0.3
Or see this region's nucleotide sequence