Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19160 and LRK53_RS19165 are separated by 138 nucleotides LRK53_RS19165 and LRK53_RS19170 are separated by 11 nucleotides LRK53_RS19170 and LRK53_RS19175 are separated by 9 nucleotides
LRK53_RS19160: LRK53_RS19160 - recombination-associated protein RdgC, at 214,663 to 215,574
_RS19160
LRK53_RS19165: LRK53_RS19165 - hypothetical protein, at 215,713 to 215,898
_RS19165
LRK53_RS19170: LRK53_RS19170 - hypothetical protein, at 215,910 to 216,863
_RS19170
LRK53_RS19175: LRK53_RS19175 - hypothetical protein, at 216,873 to 217,073
_RS19175
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 215.365 kb on + strand, within LRK53_RS19160 at 215.366 kb on - strand, within LRK53_RS19160 at 215.577 kb on + strand at 215.577 kb on + strand at 215.578 kb on - strand at 215.578 kb on - strand at 215.578 kb on - strand at 215.578 kb on - strand at 215.752 kb on + strand, within LRK53_RS19165 at 215.752 kb on + strand, within LRK53_RS19165 at 215.753 kb on - strand, within LRK53_RS19165 at 215.753 kb on - strand, within LRK53_RS19165 at 215.826 kb on - strand, within LRK53_RS19165 at 215.826 kb on - strand, within LRK53_RS19165 at 215.909 kb on + strand at 215.910 kb on - strand at 215.910 kb on - strand at 215.910 kb on - strand at 215.910 kb on - strand at 215.910 kb on - strand at 215.910 kb on - strand at 215.910 kb on - strand at 216.237 kb on - strand, within LRK53_RS19170 at 216.237 kb on - strand, within LRK53_RS19170 at 216.237 kb on - strand, within LRK53_RS19170 at 216.250 kb on + strand, within LRK53_RS19170 at 216.251 kb on - strand, within LRK53_RS19170 at 216.251 kb on - strand, within LRK53_RS19170 at 216.316 kb on + strand, within LRK53_RS19170 at 216.317 kb on - strand, within LRK53_RS19170 at 216.317 kb on - strand, within LRK53_RS19170 at 216.425 kb on + strand, within LRK53_RS19170 at 216.441 kb on + strand, within LRK53_RS19170 at 216.441 kb on + strand, within LRK53_RS19170 at 216.441 kb on + strand, within LRK53_RS19170 at 216.441 kb on + strand, within LRK53_RS19170 at 216.441 kb on + strand, within LRK53_RS19170 at 216.441 kb on + strand, within LRK53_RS19170 at 216.441 kb on + strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.442 kb on - strand, within LRK53_RS19170 at 216.651 kb on + strand, within LRK53_RS19170 at 216.675 kb on + strand, within LRK53_RS19170 at 216.675 kb on + strand, within LRK53_RS19170 at 216.724 kb on - strand, within LRK53_RS19170 at 216.867 kb on + strand at 216.868 kb on - strand at 216.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 215,365 + LRK53_RS19160 0.77 +0.3 215,366 - LRK53_RS19160 0.77 +1.3 215,577 + +0.3 215,577 + -0.3 215,578 - +1.3 215,578 - -0.6 215,578 - -0.7 215,578 - -0.1 215,752 + LRK53_RS19165 0.21 -0.3 215,752 + LRK53_RS19165 0.21 +0.3 215,753 - LRK53_RS19165 0.22 -0.3 215,753 - LRK53_RS19165 0.22 +0.3 215,826 - LRK53_RS19165 0.61 -0.8 215,826 - LRK53_RS19165 0.61 -1.9 215,909 + -1.3 215,910 - +0.3 215,910 - +1.3 215,910 - +0.5 215,910 - -1.0 215,910 - -1.0 215,910 - +2.3 215,910 - +1.3 216,237 - LRK53_RS19170 0.34 -2.3 216,237 - LRK53_RS19170 0.34 -0.5 216,237 - LRK53_RS19170 0.34 -0.3 216,250 + LRK53_RS19170 0.36 +0.1 216,251 - LRK53_RS19170 0.36 -0.5 216,251 - LRK53_RS19170 0.36 -0.3 216,316 + LRK53_RS19170 0.43 -2.5 216,317 - LRK53_RS19170 0.43 -0.0 216,317 - LRK53_RS19170 0.43 +1.5 216,425 + LRK53_RS19170 0.54 +1.7 216,441 + LRK53_RS19170 0.56 +0.2 216,441 + LRK53_RS19170 0.56 +0.9 216,441 + LRK53_RS19170 0.56 -0.9 216,441 + LRK53_RS19170 0.56 -0.0 216,441 + LRK53_RS19170 0.56 -0.9 216,441 + LRK53_RS19170 0.56 -0.1 216,441 + LRK53_RS19170 0.56 -1.1 216,442 - LRK53_RS19170 0.56 +0.3 216,442 - LRK53_RS19170 0.56 -0.1 216,442 - LRK53_RS19170 0.56 -2.7 216,442 - LRK53_RS19170 0.56 +0.3 216,442 - LRK53_RS19170 0.56 +1.3 216,442 - LRK53_RS19170 0.56 +0.7 216,442 - LRK53_RS19170 0.56 +1.1 216,442 - LRK53_RS19170 0.56 -0.2 216,442 - LRK53_RS19170 0.56 +0.1 216,442 - LRK53_RS19170 0.56 -0.3 216,442 - LRK53_RS19170 0.56 +3.1 216,442 - LRK53_RS19170 0.56 -0.7 216,442 - LRK53_RS19170 0.56 +1.3 216,651 + LRK53_RS19170 0.78 +2.0 216,675 + LRK53_RS19170 0.80 -0.3 216,675 + LRK53_RS19170 0.80 +0.3 216,724 - LRK53_RS19170 0.85 -0.7 216,867 + +1.7 216,868 - -0.3 216,868 - -1.7
Or see this region's nucleotide sequence