Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19080

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19070 and LRK53_RS19075 overlap by 4 nucleotidesLRK53_RS19075 and LRK53_RS19080 are separated by 20 nucleotidesLRK53_RS19080 and LRK53_RS19085 overlap by 4 nucleotides LRK53_RS19070: LRK53_RS19070 - hypothetical protein, at 200,904 to 201,428 _RS19070 LRK53_RS19075: LRK53_RS19075 - DUF262 domain-containing protein, at 201,425 to 202,009 _RS19075 LRK53_RS19080: LRK53_RS19080 - hypothetical protein, at 202,030 to 202,488 _RS19080 LRK53_RS19085: LRK53_RS19085 - hypothetical protein, at 202,485 to 205,382 _RS19085 Position (kb) 202 203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 201.145 kb on - strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.168 kb on + strand, within LRK53_RS19070at 201.169 kb on - strand, within LRK53_RS19070at 201.169 kb on - strand, within LRK53_RS19070at 201.169 kb on - strand, within LRK53_RS19070at 201.169 kb on - strand, within LRK53_RS19070at 201.169 kb on - strand, within LRK53_RS19070at 201.306 kb on + strand, within LRK53_RS19070at 201.306 kb on + strand, within LRK53_RS19070at 201.306 kb on + strand, within LRK53_RS19070at 201.384 kb on + strandat 201.384 kb on + strandat 201.385 kb on - strandat 201.385 kb on - strandat 201.653 kb on + strand, within LRK53_RS19075at 201.654 kb on - strand, within LRK53_RS19075at 201.654 kb on - strand, within LRK53_RS19075at 201.656 kb on + strand, within LRK53_RS19075at 201.657 kb on - strand, within LRK53_RS19075at 201.657 kb on - strand, within LRK53_RS19075at 201.657 kb on - strand, within LRK53_RS19075at 201.657 kb on - strand, within LRK53_RS19075at 201.657 kb on - strand, within LRK53_RS19075at 201.718 kb on - strand, within LRK53_RS19075at 201.834 kb on - strand, within LRK53_RS19075at 201.896 kb on + strand, within LRK53_RS19075at 201.896 kb on + strand, within LRK53_RS19075at 201.896 kb on + strand, within LRK53_RS19075at 201.896 kb on + strand, within LRK53_RS19075at 201.896 kb on + strand, within LRK53_RS19075at 201.896 kb on + strand, within LRK53_RS19075at 201.897 kb on - strand, within LRK53_RS19075at 201.897 kb on - strand, within LRK53_RS19075at 201.897 kb on - strand, within LRK53_RS19075at 201.897 kb on - strand, within LRK53_RS19075at 201.897 kb on - strand, within LRK53_RS19075at 201.897 kb on - strand, within LRK53_RS19075at 201.897 kb on - strand, within LRK53_RS19075at 202.029 kb on + strandat 202.029 kb on + strandat 202.029 kb on + strandat 202.029 kb on + strandat 202.029 kb on + strandat 202.030 kb on - strandat 202.030 kb on - strandat 202.030 kb on - strandat 202.037 kb on + strandat 202.050 kb on + strandat 202.050 kb on + strandat 202.050 kb on + strandat 202.051 kb on - strandat 202.051 kb on - strandat 202.051 kb on - strandat 202.121 kb on - strand, within LRK53_RS19080at 202.121 kb on - strand, within LRK53_RS19080at 202.121 kb on - strand, within LRK53_RS19080at 202.151 kb on + strand, within LRK53_RS19080at 202.151 kb on + strand, within LRK53_RS19080at 202.151 kb on + strand, within LRK53_RS19080at 202.151 kb on + strand, within LRK53_RS19080at 202.151 kb on + strand, within LRK53_RS19080at 202.152 kb on - strand, within LRK53_RS19080at 202.152 kb on - strand, within LRK53_RS19080at 202.152 kb on - strand, within LRK53_RS19080at 202.152 kb on - strand, within LRK53_RS19080at 202.152 kb on - strand, within LRK53_RS19080at 202.268 kb on + strand, within LRK53_RS19080at 202.268 kb on + strand, within LRK53_RS19080at 202.268 kb on + strand, within LRK53_RS19080at 202.268 kb on + strand, within LRK53_RS19080at 202.268 kb on + strand, within LRK53_RS19080at 202.269 kb on - strand, within LRK53_RS19080at 202.269 kb on - strand, within LRK53_RS19080at 202.269 kb on - strand, within LRK53_RS19080at 202.269 kb on - strand, within LRK53_RS19080at 202.363 kb on - strand, within LRK53_RS19080at 202.566 kb on + strandat 202.566 kb on + strandat 202.566 kb on + strandat 202.566 kb on + strandat 202.567 kb on - strandat 202.567 kb on - strandat 202.567 kb on - strandat 202.617 kb on + strandat 202.617 kb on + strandat 202.617 kb on + strandat 202.617 kb on + strandat 202.617 kb on + strandat 202.617 kb on + strandat 202.618 kb on - strandat 202.618 kb on - strandat 202.618 kb on - strandat 202.618 kb on - strandat 202.726 kb on - strandat 202.726 kb on - strandat 202.784 kb on - strand, within LRK53_RS19085at 203.170 kb on - strand, within LRK53_RS19085at 203.170 kb on - strand, within LRK53_RS19085at 203.244 kb on + strand, within LRK53_RS19085at 203.244 kb on + strand, within LRK53_RS19085at 203.244 kb on + strand, within LRK53_RS19085at 203.244 kb on + strand, within LRK53_RS19085at 203.244 kb on + strand, within LRK53_RS19085at 203.244 kb on + strand, within LRK53_RS19085at 203.244 kb on + strand, within LRK53_RS19085at 203.245 kb on - strand, within LRK53_RS19085at 203.245 kb on - strand, within LRK53_RS19085at 203.303 kb on - strand, within LRK53_RS19085at 203.413 kb on - strand, within LRK53_RS19085at 203.432 kb on + strand, within LRK53_RS19085

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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201,145 - LRK53_RS19070 0.46 -1.3
201,168 + LRK53_RS19070 0.50 +0.3
201,168 + LRK53_RS19070 0.50 +0.4
201,168 + LRK53_RS19070 0.50 +1.3
201,168 + LRK53_RS19070 0.50 -0.9
201,168 + LRK53_RS19070 0.50 -2.4
201,168 + LRK53_RS19070 0.50 +0.3
201,168 + LRK53_RS19070 0.50 +0.3
201,168 + LRK53_RS19070 0.50 +0.5
201,168 + LRK53_RS19070 0.50 -2.2
201,169 - LRK53_RS19070 0.50 +1.8
201,169 - LRK53_RS19070 0.50 -0.5
201,169 - LRK53_RS19070 0.50 -0.5
201,169 - LRK53_RS19070 0.50 -1.3
201,169 - LRK53_RS19070 0.50 +1.6
201,306 + LRK53_RS19070 0.77 +1.3
201,306 + LRK53_RS19070 0.77 +2.9
201,306 + LRK53_RS19070 0.77 +0.1
201,384 + +0.3
201,384 + -0.3
201,385 - -0.7
201,385 - -0.9
201,653 + LRK53_RS19075 0.39 -1.0
201,654 - LRK53_RS19075 0.39 +0.4
201,654 - LRK53_RS19075 0.39 -0.7
201,656 + LRK53_RS19075 0.39 -0.7
201,657 - LRK53_RS19075 0.40 -1.6
201,657 - LRK53_RS19075 0.40 -1.4
201,657 - LRK53_RS19075 0.40 +1.3
201,657 - LRK53_RS19075 0.40 +1.0
201,657 - LRK53_RS19075 0.40 +1.3
201,718 - LRK53_RS19075 0.50 -0.0
201,834 - LRK53_RS19075 0.70 +0.9
201,896 + LRK53_RS19075 0.81 -0.0
201,896 + LRK53_RS19075 0.81 -0.4
201,896 + LRK53_RS19075 0.81 -0.3
201,896 + LRK53_RS19075 0.81 -0.0
201,896 + LRK53_RS19075 0.81 -1.3
201,896 + LRK53_RS19075 0.81 -1.7
201,897 - LRK53_RS19075 0.81 -0.7
201,897 - LRK53_RS19075 0.81 +0.1
201,897 - LRK53_RS19075 0.81 +1.3
201,897 - LRK53_RS19075 0.81 +0.3
201,897 - LRK53_RS19075 0.81 -0.3
201,897 - LRK53_RS19075 0.81 +0.7
201,897 - LRK53_RS19075 0.81 +1.3
202,029 + +1.3
202,029 + +1.3
202,029 + -1.5
202,029 + -0.7
202,029 + -0.7
202,030 - -2.0
202,030 - -0.7
202,030 - -1.2
202,037 + +1.5
202,050 + +0.3
202,050 + -0.7
202,050 + -0.8
202,051 - -3.0
202,051 - -0.3
202,051 - -0.5
202,121 - LRK53_RS19080 0.20 -0.7
202,121 - LRK53_RS19080 0.20 -0.7
202,121 - LRK53_RS19080 0.20 -0.3
202,151 + LRK53_RS19080 0.26 -0.4
202,151 + LRK53_RS19080 0.26 +1.6
202,151 + LRK53_RS19080 0.26 -1.5
202,151 + LRK53_RS19080 0.26 +1.3
202,151 + LRK53_RS19080 0.26 -1.3
202,152 - LRK53_RS19080 0.27 -1.2
202,152 - LRK53_RS19080 0.27 +0.6
202,152 - LRK53_RS19080 0.27 -1.3
202,152 - LRK53_RS19080 0.27 -1.2
202,152 - LRK53_RS19080 0.27 -0.7
202,268 + LRK53_RS19080 0.52 -0.7
202,268 + LRK53_RS19080 0.52 -0.8
202,268 + LRK53_RS19080 0.52 -0.0
202,268 + LRK53_RS19080 0.52 -1.9
202,268 + LRK53_RS19080 0.52 -1.5
202,269 - LRK53_RS19080 0.52 -1.9
202,269 - LRK53_RS19080 0.52 -0.0
202,269 - LRK53_RS19080 0.52 -2.0
202,269 - LRK53_RS19080 0.52 +1.0
202,363 - LRK53_RS19080 0.73 -0.7
202,566 + +1.3
202,566 + -0.7
202,566 + -1.0
202,566 + -1.0
202,567 - -0.1
202,567 - -1.5
202,567 - -2.2
202,617 + +1.7
202,617 + +1.0
202,617 + -2.7
202,617 + +0.1
202,617 + +0.0
202,617 + +2.3
202,618 - -0.7
202,618 - +0.3
202,618 - -0.4
202,618 - -0.5
202,726 - -1.3
202,726 - -0.3
202,784 - LRK53_RS19085 0.10 +0.3
203,170 - LRK53_RS19085 0.24 -0.7
203,170 - LRK53_RS19085 0.24 -0.0
203,244 + LRK53_RS19085 0.26 -0.5
203,244 + LRK53_RS19085 0.26 +0.3
203,244 + LRK53_RS19085 0.26 +2.3
203,244 + LRK53_RS19085 0.26 +0.2
203,244 + LRK53_RS19085 0.26 -1.7
203,244 + LRK53_RS19085 0.26 -1.2
203,244 + LRK53_RS19085 0.26 -1.2
203,245 - LRK53_RS19085 0.26 -0.3
203,245 - LRK53_RS19085 0.26 +0.3
203,303 - LRK53_RS19085 0.28 -1.3
203,413 - LRK53_RS19085 0.32 -1.3
203,432 + LRK53_RS19085 0.33 -0.7

Or see this region's nucleotide sequence