Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19025

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19015 and LRK53_RS19020 are separated by 76 nucleotidesLRK53_RS19020 and LRK53_RS19025 overlap by 8 nucleotidesLRK53_RS19025 and LRK53_RS19030 are separated by 80 nucleotidesLRK53_RS19030 and LRK53_RS19035 overlap by 4 nucleotides LRK53_RS19015: LRK53_RS19015 - hypothetical protein, at 193,437 to 194,498 _RS19015 LRK53_RS19020: LRK53_RS19020 - hypothetical protein, at 194,575 to 194,895 _RS19020 LRK53_RS19025: LRK53_RS19025 - DUF2786 domain-containing protein, at 194,888 to 195,448 _RS19025 LRK53_RS19030: LRK53_RS19030 - hypothetical protein, at 195,529 to 195,771 _RS19030 LRK53_RS19035: LRK53_RS19035 - DUF72 domain-containing protein, at 195,768 to 196,676 _RS19035 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 194.042 kb on - strand, within LRK53_RS19015at 194.049 kb on + strand, within LRK53_RS19015at 194.050 kb on - strand, within LRK53_RS19015at 194.178 kb on - strand, within LRK53_RS19015at 194.222 kb on + strand, within LRK53_RS19015at 194.222 kb on + strand, within LRK53_RS19015at 194.222 kb on + strand, within LRK53_RS19015at 194.223 kb on - strand, within LRK53_RS19015at 194.223 kb on - strand, within LRK53_RS19015at 194.389 kb on - strand, within LRK53_RS19015at 194.627 kb on + strand, within LRK53_RS19020at 194.627 kb on + strand, within LRK53_RS19020at 194.627 kb on + strand, within LRK53_RS19020at 194.627 kb on + strand, within LRK53_RS19020at 194.628 kb on - strand, within LRK53_RS19020at 194.628 kb on - strand, within LRK53_RS19020at 194.628 kb on - strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.812 kb on - strand, within LRK53_RS19020at 195.025 kb on - strand, within LRK53_RS19025at 195.105 kb on + strand, within LRK53_RS19025at 195.105 kb on + strand, within LRK53_RS19025at 195.106 kb on - strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.375 kb on - strand, within LRK53_RS19025at 195.475 kb on + strandat 195.475 kb on + strandat 195.475 kb on + strandat 195.475 kb on + strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.480 kb on + strandat 195.481 kb on - strandat 195.756 kb on + strandat 195.756 kb on + strandat 195.757 kb on - strandat 195.774 kb on - strandat 195.831 kb on + strandat 195.832 kb on - strandat 195.871 kb on - strand, within LRK53_RS19035at 195.871 kb on - strand, within LRK53_RS19035at 195.871 kb on - strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.916 kb on - strand, within LRK53_RS19035at 195.916 kb on - strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.084 kb on - strand, within LRK53_RS19035at 196.084 kb on - strand, within LRK53_RS19035at 196.224 kb on + strand, within LRK53_RS19035at 196.225 kb on - strand, within LRK53_RS19035at 196.230 kb on + strand, within LRK53_RS19035at 196.231 kb on - strand, within LRK53_RS19035

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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194,042 - LRK53_RS19015 0.57 +0.1
194,049 + LRK53_RS19015 0.58 +0.1
194,050 - LRK53_RS19015 0.58 +1.1
194,178 - LRK53_RS19015 0.70 -0.6
194,222 + LRK53_RS19015 0.74 +0.1
194,222 + LRK53_RS19015 0.74 -1.2
194,222 + LRK53_RS19015 0.74 -1.1
194,223 - LRK53_RS19015 0.74 -2.2
194,223 - LRK53_RS19015 0.74 -1.7
194,389 - LRK53_RS19015 0.90 -1.2
194,627 + LRK53_RS19020 0.16 +0.1
194,627 + LRK53_RS19020 0.16 -0.5
194,627 + LRK53_RS19020 0.16 +0.2
194,627 + LRK53_RS19020 0.16 -0.9
194,628 - LRK53_RS19020 0.17 +2.0
194,628 - LRK53_RS19020 0.17 -0.1
194,628 - LRK53_RS19020 0.17 +1.5
194,782 + LRK53_RS19020 0.64 -1.2
194,782 + LRK53_RS19020 0.64 +0.1
194,782 + LRK53_RS19020 0.64 +0.5
194,782 + LRK53_RS19020 0.64 +1.1
194,782 + LRK53_RS19020 0.64 +0.2
194,783 - LRK53_RS19020 0.65 +1.7
194,783 - LRK53_RS19020 0.65 +1.1
194,783 - LRK53_RS19020 0.65 +0.7
194,783 - LRK53_RS19020 0.65 -1.9
194,812 - LRK53_RS19020 0.74 +1.8
195,025 - LRK53_RS19025 0.24 +2.1
195,105 + LRK53_RS19025 0.39 +0.6
195,105 + LRK53_RS19025 0.39 -0.9
195,106 - LRK53_RS19025 0.39 -2.1
195,185 + LRK53_RS19025 0.53 +1.1
195,185 + LRK53_RS19025 0.53 -0.3
195,185 + LRK53_RS19025 0.53 -0.0
195,185 + LRK53_RS19025 0.53 -0.1
195,185 + LRK53_RS19025 0.53 -2.1
195,186 - LRK53_RS19025 0.53 +1.5
195,186 - LRK53_RS19025 0.53 +0.8
195,186 - LRK53_RS19025 0.53 -2.1
195,186 - LRK53_RS19025 0.53 -0.8
195,186 - LRK53_RS19025 0.53 +0.1
195,186 - LRK53_RS19025 0.53 +0.8
195,186 - LRK53_RS19025 0.53 +0.9
195,206 + LRK53_RS19025 0.57 -0.1
195,206 + LRK53_RS19025 0.57 -0.2
195,206 + LRK53_RS19025 0.57 +0.9
195,207 - LRK53_RS19025 0.57 -0.5
195,207 - LRK53_RS19025 0.57 +1.1
195,207 - LRK53_RS19025 0.57 -0.3
195,207 - LRK53_RS19025 0.57 -1.7
195,207 - LRK53_RS19025 0.57 +0.4
195,207 - LRK53_RS19025 0.57 -0.5
195,207 - LRK53_RS19025 0.57 +0.3
195,374 + LRK53_RS19025 0.87 -0.0
195,374 + LRK53_RS19025 0.87 +0.8
195,374 + LRK53_RS19025 0.87 -1.2
195,375 - LRK53_RS19025 0.87 -1.5
195,475 + -0.2
195,475 + -1.1
195,475 + +1.4
195,475 + -0.9
195,476 - +2.1
195,476 - -1.2
195,476 - +0.7
195,476 - +0.1
195,476 - +0.4
195,480 + +0.1
195,481 - -0.0
195,756 + +0.3
195,756 + -0.0
195,757 - -0.3
195,774 - -1.2
195,831 + -0.8
195,832 - -2.3
195,871 - LRK53_RS19035 0.11 +1.8
195,871 - LRK53_RS19035 0.11 -3.6
195,871 - LRK53_RS19035 0.11 +1.1
195,873 + LRK53_RS19035 0.12 -1.7
195,873 + LRK53_RS19035 0.12 +1.1
195,873 + LRK53_RS19035 0.12 -1.8
195,873 + LRK53_RS19035 0.12 -0.5
195,873 + LRK53_RS19035 0.12 +1.0
195,874 - LRK53_RS19035 0.12 -1.1
195,874 - LRK53_RS19035 0.12 +1.1
195,874 - LRK53_RS19035 0.12 -1.2
195,874 - LRK53_RS19035 0.12 -1.2
195,912 + LRK53_RS19035 0.16 -0.4
195,912 + LRK53_RS19035 0.16 -1.6
195,912 + LRK53_RS19035 0.16 -1.1
195,913 - LRK53_RS19035 0.16 -1.5
195,913 - LRK53_RS19035 0.16 -1.7
195,913 - LRK53_RS19035 0.16 -1.6
195,913 - LRK53_RS19035 0.16 +1.7
195,913 - LRK53_RS19035 0.16 -0.5
195,916 - LRK53_RS19035 0.16 -1.6
195,916 - LRK53_RS19035 0.16 +0.1
196,083 + LRK53_RS19035 0.35 -2.3
196,083 + LRK53_RS19035 0.35 +0.1
196,083 + LRK53_RS19035 0.35 +1.7
196,083 + LRK53_RS19035 0.35 -0.5
196,083 + LRK53_RS19035 0.35 -0.0
196,083 + LRK53_RS19035 0.35 +1.1
196,084 - LRK53_RS19035 0.35 -0.4
196,084 - LRK53_RS19035 0.35 -0.2
196,224 + LRK53_RS19035 0.50 -0.9
196,225 - LRK53_RS19035 0.50 +0.2
196,230 + LRK53_RS19035 0.51 -0.6
196,231 - LRK53_RS19035 0.51 +0.9

Or see this region's nucleotide sequence