Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18955

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18950 and LRK53_RS18955 are separated by 526 nucleotidesLRK53_RS18955 and LRK53_RS18960 are separated by 103 nucleotidesLRK53_RS18960 and LRK53_RS18965 are separated by 78 nucleotides LRK53_RS18950: LRK53_RS18950 - hypothetical protein, at 184,134 to 184,583 _RS18950 LRK53_RS18955: LRK53_RS18955 - hypothetical protein, at 185,110 to 185,745 _RS18955 LRK53_RS18960: LRK53_RS18960 - hypothetical protein, at 185,849 to 186,130 _RS18960 LRK53_RS18965: LRK53_RS18965 - hypothetical protein, at 186,209 to 186,907 _RS18965 Position (kb) 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 184.113 kb on + strandat 184.113 kb on + strandat 184.114 kb on - strandat 184.114 kb on - strandat 184.139 kb on + strandat 184.140 kb on - strandat 184.173 kb on + strandat 184.173 kb on + strandat 184.173 kb on + strandat 184.173 kb on + strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.263 kb on + strand, within LRK53_RS18950at 184.264 kb on - strand, within LRK53_RS18950at 184.372 kb on - strand, within LRK53_RS18950at 184.372 kb on - strand, within LRK53_RS18950at 184.683 kb on + strandat 184.683 kb on + strandat 184.683 kb on + strandat 184.683 kb on + strandat 184.684 kb on - strandat 184.946 kb on + strandat 184.947 kb on - strandat 184.947 kb on - strandat 185.026 kb on + strandat 185.026 kb on + strandat 185.026 kb on + strandat 185.027 kb on - strandat 185.027 kb on - strandat 185.056 kb on - strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.100 kb on + strandat 185.138 kb on - strandat 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.340 kb on + strand, within LRK53_RS18955at 185.341 kb on - strand, within LRK53_RS18955at 185.353 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.580 kb on - strand, within LRK53_RS18955at 185.743 kb on + strandat 185.744 kb on - strandat 185.744 kb on - strandat 185.811 kb on + strandat 185.812 kb on - strandat 185.921 kb on + strand, within LRK53_RS18960at 186.065 kb on + strand, within LRK53_RS18960at 186.128 kb on + strandat 186.128 kb on + strandat 186.129 kb on - strandat 186.129 kb on - strandat 186.193 kb on + strandat 186.284 kb on + strand, within LRK53_RS18965at 186.284 kb on + strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.494 kb on + strand, within LRK53_RS18965at 186.495 kb on - strand, within LRK53_RS18965at 186.495 kb on - strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.726 kb on - strand, within LRK53_RS18965at 186.726 kb on - strand, within LRK53_RS18965

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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184,113 + +1.4
184,113 + +0.9
184,114 - -1.1
184,114 - +0.1
184,139 + +0.6
184,140 - -0.6
184,173 + +0.7
184,173 + +1.1
184,173 + +1.1
184,173 + +1.5
184,174 - -0.5
184,174 - +0.5
184,174 - -1.5
184,174 - -0.9
184,174 - +2.7
184,174 - +0.5
184,174 - +0.8
184,174 - -0.6
184,263 + LRK53_RS18950 0.29 -2.7
184,264 - LRK53_RS18950 0.29 +0.1
184,372 - LRK53_RS18950 0.53 -0.4
184,372 - LRK53_RS18950 0.53 -0.6
184,683 + -0.5
184,683 + -1.5
184,683 + -1.6
184,683 + +0.7
184,684 - -0.9
184,946 + +0.5
184,947 - +1.1
184,947 - +0.6
185,026 + -0.8
185,026 + -0.6
185,026 + -1.3
185,027 - -0.3
185,027 - -2.1
185,056 - -0.1
185,096 + -1.1
185,096 + -3.0
185,096 + -0.8
185,097 - +0.8
185,097 - -0.7
185,097 - -0.7
185,097 - +0.2
185,097 - +1.1
185,097 - +0.3
185,097 - -2.0
185,100 + -0.9
185,138 - -0.4
185,184 + LRK53_RS18955 0.12 +1.0
185,184 + LRK53_RS18955 0.12 -0.6
185,184 + LRK53_RS18955 0.12 +1.7
185,184 + LRK53_RS18955 0.12 +0.5
185,184 + LRK53_RS18955 0.12 +0.5
185,184 + LRK53_RS18955 0.12 +0.1
185,185 - LRK53_RS18955 0.12 -1.5
185,185 - LRK53_RS18955 0.12 -0.2
185,185 - LRK53_RS18955 0.12 +3.4
185,185 - LRK53_RS18955 0.12 +1.5
185,185 - LRK53_RS18955 0.12 -0.2
185,185 - LRK53_RS18955 0.12 -2.3
185,185 - LRK53_RS18955 0.12 -0.9
185,285 + LRK53_RS18955 0.28 +1.1
185,285 + LRK53_RS18955 0.28 -0.5
185,285 + LRK53_RS18955 0.28 +0.3
185,285 + LRK53_RS18955 0.28 +0.8
185,285 + LRK53_RS18955 0.28 -1.6
185,286 - LRK53_RS18955 0.28 -0.9
185,286 - LRK53_RS18955 0.28 +2.1
185,286 - LRK53_RS18955 0.28 -0.1
185,286 - LRK53_RS18955 0.28 -1.1
185,286 - LRK53_RS18955 0.28 -1.2
185,286 - LRK53_RS18955 0.28 +1.1
185,286 - LRK53_RS18955 0.28 +0.8
185,286 - LRK53_RS18955 0.28 +2.1
185,286 - LRK53_RS18955 0.28 +0.4
185,286 - LRK53_RS18955 0.28 -1.7
185,286 - LRK53_RS18955 0.28 -0.6
185,340 + LRK53_RS18955 0.36 +2.0
185,341 - LRK53_RS18955 0.36 -0.0
185,353 + LRK53_RS18955 0.38 +3.1
185,404 + LRK53_RS18955 0.46 -2.7
185,404 + LRK53_RS18955 0.46 -0.1
185,404 + LRK53_RS18955 0.46 -2.6
185,404 + LRK53_RS18955 0.46 -0.5
185,405 - LRK53_RS18955 0.46 +0.6
185,405 - LRK53_RS18955 0.46 -0.7
185,405 - LRK53_RS18955 0.46 -1.5
185,405 - LRK53_RS18955 0.46 -0.7
185,405 - LRK53_RS18955 0.46 +0.3
185,405 - LRK53_RS18955 0.46 -0.5
185,580 - LRK53_RS18955 0.74 -0.1
185,743 + -0.8
185,744 - +0.9
185,744 - -0.7
185,811 + -1.7
185,812 - -0.4
185,921 + LRK53_RS18960 0.26 -0.5
186,065 + LRK53_RS18960 0.77 -1.7
186,128 + -2.3
186,128 + +0.2
186,129 - -0.9
186,129 - +2.1
186,193 + -1.2
186,284 + LRK53_RS18965 0.11 +0.1
186,284 + LRK53_RS18965 0.11 +0.0
186,285 - LRK53_RS18965 0.11 -0.9
186,285 - LRK53_RS18965 0.11 -1.7
186,285 - LRK53_RS18965 0.11 +0.1
186,285 - LRK53_RS18965 0.11 +0.1
186,285 - LRK53_RS18965 0.11 -1.7
186,363 + LRK53_RS18965 0.22 +0.7
186,363 + LRK53_RS18965 0.22 -1.2
186,363 + LRK53_RS18965 0.22 -2.9
186,363 + LRK53_RS18965 0.22 -0.9
186,363 + LRK53_RS18965 0.22 -0.5
186,364 - LRK53_RS18965 0.22 +0.5
186,364 - LRK53_RS18965 0.22 +0.0
186,364 - LRK53_RS18965 0.22 -1.1
186,364 - LRK53_RS18965 0.22 -0.2
186,364 - LRK53_RS18965 0.22 +0.5
186,364 - LRK53_RS18965 0.22 +1.1
186,364 - LRK53_RS18965 0.22 -0.2
186,364 - LRK53_RS18965 0.22 -1.5
186,494 + LRK53_RS18965 0.41 -0.8
186,495 - LRK53_RS18965 0.41 +0.1
186,495 - LRK53_RS18965 0.41 +0.4
186,605 + LRK53_RS18965 0.57 +0.7
186,605 + LRK53_RS18965 0.57 -1.8
186,605 + LRK53_RS18965 0.57 +0.1
186,605 + LRK53_RS18965 0.57 -1.2
186,605 + LRK53_RS18965 0.57 -1.2
186,605 + LRK53_RS18965 0.57 +0.3
186,605 + LRK53_RS18965 0.57 +1.1
186,605 + LRK53_RS18965 0.57 -0.5
186,605 + LRK53_RS18965 0.57 +0.3
186,605 + LRK53_RS18965 0.57 +0.8
186,605 + LRK53_RS18965 0.57 +0.1
186,605 + LRK53_RS18965 0.57 -0.4
186,605 + LRK53_RS18965 0.57 -0.5
186,605 + LRK53_RS18965 0.57 -0.9
186,605 + LRK53_RS18965 0.57 -0.7
186,605 + LRK53_RS18965 0.57 -1.5
186,605 + LRK53_RS18965 0.57 +0.1
186,605 + LRK53_RS18965 0.57 -0.5
186,605 + LRK53_RS18965 0.57 -1.9
186,605 + LRK53_RS18965 0.57 -0.1
186,605 + LRK53_RS18965 0.57 -1.2
186,605 + LRK53_RS18965 0.57 -0.7
186,606 - LRK53_RS18965 0.57 -1.1
186,606 - LRK53_RS18965 0.57 +0.9
186,606 - LRK53_RS18965 0.57 +2.7
186,606 - LRK53_RS18965 0.57 -2.7
186,606 - LRK53_RS18965 0.57 -1.2
186,606 - LRK53_RS18965 0.57 -1.9
186,606 - LRK53_RS18965 0.57 -2.5
186,606 - LRK53_RS18965 0.57 +2.1
186,606 - LRK53_RS18965 0.57 -0.1
186,606 - LRK53_RS18965 0.57 -1.4
186,606 - LRK53_RS18965 0.57 -0.6
186,606 - LRK53_RS18965 0.57 +0.5
186,606 - LRK53_RS18965 0.57 -0.0
186,606 - LRK53_RS18965 0.57 +1.7
186,606 - LRK53_RS18965 0.57 -0.1
186,606 - LRK53_RS18965 0.57 -1.6
186,606 - LRK53_RS18965 0.57 -0.9
186,606 - LRK53_RS18965 0.57 -1.3
186,606 - LRK53_RS18965 0.57 +0.3
186,606 - LRK53_RS18965 0.57 -1.2
186,725 + LRK53_RS18965 0.74 -1.7
186,725 + LRK53_RS18965 0.74 +0.3
186,725 + LRK53_RS18965 0.74 -1.9
186,725 + LRK53_RS18965 0.74 -1.6
186,725 + LRK53_RS18965 0.74 -0.3
186,726 - LRK53_RS18965 0.74 -0.5
186,726 - LRK53_RS18965 0.74 -0.4

Or see this region's nucleotide sequence