Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18875 and LRK53_RS18880 are separated by 57 nucleotides LRK53_RS18880 and LRK53_RS18885 overlap by 4 nucleotides
LRK53_RS18875: LRK53_RS18875 - conjugal transfer protein TraF, at 167,231 to 168,256
_RS18875
LRK53_RS18880: LRK53_RS18880 - hypothetical protein, at 168,314 to 169,090
_RS18880
LRK53_RS18885: LRK53_RS18885 - hypothetical protein, at 169,087 to 169,716
_RS18885
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 167.342 kb on + strand, within LRK53_RS18875 at 167.561 kb on + strand, within LRK53_RS18875 at 167.561 kb on + strand, within LRK53_RS18875 at 167.589 kb on + strand, within LRK53_RS18875 at 167.589 kb on + strand, within LRK53_RS18875 at 167.590 kb on - strand, within LRK53_RS18875 at 167.590 kb on - strand, within LRK53_RS18875 at 167.590 kb on - strand, within LRK53_RS18875 at 167.675 kb on + strand, within LRK53_RS18875 at 167.675 kb on + strand, within LRK53_RS18875 at 167.676 kb on - strand, within LRK53_RS18875 at 167.727 kb on + strand, within LRK53_RS18875 at 167.751 kb on + strand, within LRK53_RS18875 at 167.752 kb on - strand, within LRK53_RS18875 at 167.898 kb on + strand, within LRK53_RS18875 at 167.898 kb on + strand, within LRK53_RS18875 at 167.899 kb on - strand, within LRK53_RS18875 at 167.899 kb on - strand, within LRK53_RS18875 at 167.923 kb on + strand, within LRK53_RS18875 at 167.923 kb on + strand, within LRK53_RS18875 at 167.923 kb on + strand, within LRK53_RS18875 at 167.923 kb on + strand, within LRK53_RS18875 at 167.924 kb on - strand, within LRK53_RS18875 at 167.924 kb on - strand, within LRK53_RS18875 at 167.946 kb on + strand, within LRK53_RS18875 at 167.952 kb on + strand, within LRK53_RS18875 at 167.952 kb on + strand, within LRK53_RS18875 at 167.952 kb on + strand, within LRK53_RS18875 at 167.952 kb on + strand, within LRK53_RS18875 at 167.952 kb on + strand, within LRK53_RS18875 at 167.952 kb on + strand, within LRK53_RS18875 at 167.952 kb on + strand, within LRK53_RS18875 at 167.953 kb on - strand, within LRK53_RS18875 at 167.953 kb on - strand, within LRK53_RS18875 at 167.953 kb on - strand, within LRK53_RS18875 at 167.953 kb on - strand, within LRK53_RS18875 at 167.953 kb on - strand, within LRK53_RS18875 at 167.953 kb on - strand, within LRK53_RS18875 at 168.267 kb on + strand at 168.267 kb on + strand at 168.268 kb on - strand at 168.268 kb on - strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.315 kb on + strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.316 kb on - strand at 168.541 kb on + strand, within LRK53_RS18880 at 168.541 kb on + strand, within LRK53_RS18880 at 168.542 kb on - strand, within LRK53_RS18880 at 168.542 kb on - strand, within LRK53_RS18880 at 168.542 kb on - strand, within LRK53_RS18880 at 168.542 kb on - strand, within LRK53_RS18880 at 168.589 kb on + strand, within LRK53_RS18880 at 168.601 kb on + strand, within LRK53_RS18880 at 168.602 kb on - strand, within LRK53_RS18880 at 168.732 kb on - strand, within LRK53_RS18880 at 168.732 kb on - strand, within LRK53_RS18880 at 168.732 kb on - strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.972 kb on + strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.973 kb on - strand, within LRK53_RS18880 at 168.988 kb on - strand, within LRK53_RS18880 at 168.988 kb on - strand, within LRK53_RS18880 at 169.025 kb on - strand at 169.084 kb on + strand at 169.084 kb on + strand at 169.084 kb on + strand at 169.084 kb on + strand at 169.085 kb on - strand at 169.085 kb on - strand at 169.085 kb on - strand at 169.233 kb on + strand, within LRK53_RS18885 at 169.233 kb on + strand, within LRK53_RS18885 at 169.233 kb on + strand, within LRK53_RS18885 at 169.233 kb on + strand, within LRK53_RS18885 at 169.234 kb on - strand, within LRK53_RS18885 at 169.234 kb on - strand, within LRK53_RS18885 at 169.234 kb on - strand, within LRK53_RS18885 at 169.234 kb on - strand, within LRK53_RS18885 at 169.381 kb on + strand, within LRK53_RS18885 at 169.381 kb on + strand, within LRK53_RS18885 at 169.382 kb on - strand, within LRK53_RS18885 at 169.403 kb on + strand, within LRK53_RS18885 at 169.403 kb on + strand, within LRK53_RS18885 at 169.404 kb on - strand, within LRK53_RS18885 at 169.404 kb on - strand, within LRK53_RS18885 at 169.404 kb on - strand, within LRK53_RS18885 at 169.404 kb on - strand, within LRK53_RS18885 at 169.413 kb on + strand, within LRK53_RS18885 at 169.424 kb on + strand, within LRK53_RS18885 at 169.424 kb on + strand, within LRK53_RS18885 at 169.424 kb on + strand, within LRK53_RS18885 at 169.424 kb on + strand, within LRK53_RS18885 at 169.424 kb on + strand, within LRK53_RS18885 at 169.425 kb on - strand, within LRK53_RS18885 at 169.425 kb on - strand, within LRK53_RS18885 at 169.425 kb on - strand, within LRK53_RS18885 at 169.425 kb on - strand, within LRK53_RS18885 at 169.425 kb on - strand, within LRK53_RS18885 at 169.425 kb on - strand, within LRK53_RS18885 at 169.425 kb on - strand, within LRK53_RS18885 at 169.577 kb on + strand, within LRK53_RS18885 at 169.577 kb on + strand, within LRK53_RS18885 at 169.577 kb on + strand, within LRK53_RS18885 at 169.578 kb on - strand, within LRK53_RS18885 at 169.578 kb on - strand, within LRK53_RS18885 at 169.578 kb on - strand, within LRK53_RS18885 at 169.578 kb on - strand, within LRK53_RS18885 at 169.578 kb on - strand, within LRK53_RS18885 at 169.597 kb on + strand, within LRK53_RS18885 at 169.638 kb on + strand, within LRK53_RS18885 at 169.639 kb on - strand, within LRK53_RS18885 at 169.673 kb on + strand at 169.673 kb on + strand at 169.673 kb on + strand at 169.673 kb on + strand at 169.674 kb on - strand at 169.674 kb on - strand at 169.716 kb on + strand at 169.716 kb on + strand at 169.716 kb on + strand at 169.716 kb on + strand at 169.716 kb on + strand at 169.716 kb on + strand at 169.716 kb on + strand at 169.716 kb on + strand at 169.717 kb on - strand at 169.717 kb on - strand at 169.717 kb on - strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.737 kb on + strand at 169.789 kb on + strand at 169.789 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.830 kb on - strand at 169.830 kb on - strand at 169.919 kb on + strand at 169.919 kb on + strand at 169.919 kb on + strand at 169.919 kb on + strand at 169.919 kb on + strand at 169.920 kb on - strand at 169.940 kb on + strand at 169.940 kb on + strand at 169.940 kb on + strand at 169.940 kb on + strand at 169.940 kb on + strand at 170.070 kb on + strand at 170.070 kb on + strand at 170.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 167,342 + LRK53_RS18875 0.11 +0.8 167,561 + LRK53_RS18875 0.32 -1.3 167,561 + LRK53_RS18875 0.32 +1.1 167,589 + LRK53_RS18875 0.35 +0.0 167,589 + LRK53_RS18875 0.35 +0.4 167,590 - LRK53_RS18875 0.35 +0.5 167,590 - LRK53_RS18875 0.35 +0.1 167,590 - LRK53_RS18875 0.35 -1.7 167,675 + LRK53_RS18875 0.43 +0.5 167,675 + LRK53_RS18875 0.43 -1.3 167,676 - LRK53_RS18875 0.43 -2.0 167,727 + LRK53_RS18875 0.48 -0.5 167,751 + LRK53_RS18875 0.51 +0.5 167,752 - LRK53_RS18875 0.51 +1.4 167,898 + LRK53_RS18875 0.65 -1.0 167,898 + LRK53_RS18875 0.65 -0.7 167,899 - LRK53_RS18875 0.65 +0.0 167,899 - LRK53_RS18875 0.65 -0.4 167,923 + LRK53_RS18875 0.67 -1.9 167,923 + LRK53_RS18875 0.67 -1.9 167,923 + LRK53_RS18875 0.67 -1.1 167,923 + LRK53_RS18875 0.67 +3.1 167,924 - LRK53_RS18875 0.68 +0.4 167,924 - LRK53_RS18875 0.68 +1.7 167,946 + LRK53_RS18875 0.70 -1.9 167,952 + LRK53_RS18875 0.70 -0.8 167,952 + LRK53_RS18875 0.70 -1.3 167,952 + LRK53_RS18875 0.70 +1.1 167,952 + LRK53_RS18875 0.70 +0.3 167,952 + LRK53_RS18875 0.70 +2.1 167,952 + LRK53_RS18875 0.70 +0.5 167,952 + LRK53_RS18875 0.70 -0.0 167,953 - LRK53_RS18875 0.70 -0.8 167,953 - LRK53_RS18875 0.70 -0.4 167,953 - LRK53_RS18875 0.70 +1.1 167,953 - LRK53_RS18875 0.70 -0.5 167,953 - LRK53_RS18875 0.70 -0.5 167,953 - LRK53_RS18875 0.70 +1.1 168,267 + -0.5 168,267 + +0.1 168,268 - -0.2 168,268 - -2.2 168,315 + -0.7 168,315 + -0.9 168,315 + -1.2 168,315 + +0.4 168,315 + +1.1 168,315 + -1.6 168,315 + +0.1 168,315 + +0.5 168,315 + -0.9 168,315 + -0.6 168,315 + -0.9 168,315 + -1.1 168,316 - -0.5 168,316 - +0.1 168,316 - -0.3 168,316 - +0.9 168,316 - -0.7 168,316 - +0.9 168,316 - -1.1 168,316 - +0.4 168,316 - -0.5 168,316 - +0.1 168,316 - -1.3 168,541 + LRK53_RS18880 0.29 -0.9 168,541 + LRK53_RS18880 0.29 -1.9 168,542 - LRK53_RS18880 0.29 +0.4 168,542 - LRK53_RS18880 0.29 -1.2 168,542 - LRK53_RS18880 0.29 -0.1 168,542 - LRK53_RS18880 0.29 -0.8 168,589 + LRK53_RS18880 0.35 -0.6 168,601 + LRK53_RS18880 0.37 -0.7 168,602 - LRK53_RS18880 0.37 +0.4 168,732 - LRK53_RS18880 0.54 -1.4 168,732 - LRK53_RS18880 0.54 -1.2 168,732 - LRK53_RS18880 0.54 -0.7 168,972 + LRK53_RS18880 0.85 -0.5 168,972 + LRK53_RS18880 0.85 -0.2 168,972 + LRK53_RS18880 0.85 -0.4 168,972 + LRK53_RS18880 0.85 -0.1 168,972 + LRK53_RS18880 0.85 -1.4 168,972 + LRK53_RS18880 0.85 -0.5 168,972 + LRK53_RS18880 0.85 -0.3 168,972 + LRK53_RS18880 0.85 -1.2 168,972 + LRK53_RS18880 0.85 -0.4 168,972 + LRK53_RS18880 0.85 -0.8 168,972 + LRK53_RS18880 0.85 -0.4 168,972 + LRK53_RS18880 0.85 -0.5 168,972 + LRK53_RS18880 0.85 +1.5 168,972 + LRK53_RS18880 0.85 -1.9 168,972 + LRK53_RS18880 0.85 -1.7 168,972 + LRK53_RS18880 0.85 -0.1 168,973 - LRK53_RS18880 0.85 -1.7 168,973 - LRK53_RS18880 0.85 +0.5 168,973 - LRK53_RS18880 0.85 +1.1 168,973 - LRK53_RS18880 0.85 +0.1 168,973 - LRK53_RS18880 0.85 -0.3 168,973 - LRK53_RS18880 0.85 -0.1 168,973 - LRK53_RS18880 0.85 -1.4 168,973 - LRK53_RS18880 0.85 -2.2 168,973 - LRK53_RS18880 0.85 -0.5 168,973 - LRK53_RS18880 0.85 -0.6 168,973 - LRK53_RS18880 0.85 -0.7 168,988 - LRK53_RS18880 0.87 -0.6 168,988 - LRK53_RS18880 0.87 -1.2 169,025 - -0.8 169,084 + -1.3 169,084 + -0.6 169,084 + +0.5 169,084 + +0.4 169,085 - +0.1 169,085 - +0.5 169,085 - -0.5 169,233 + LRK53_RS18885 0.23 -0.6 169,233 + LRK53_RS18885 0.23 +2.1 169,233 + LRK53_RS18885 0.23 +0.8 169,233 + LRK53_RS18885 0.23 +0.2 169,234 - LRK53_RS18885 0.23 +1.7 169,234 - LRK53_RS18885 0.23 -0.5 169,234 - LRK53_RS18885 0.23 +0.4 169,234 - LRK53_RS18885 0.23 +0.3 169,381 + LRK53_RS18885 0.47 +1.8 169,381 + LRK53_RS18885 0.47 -0.4 169,382 - LRK53_RS18885 0.47 -1.5 169,403 + LRK53_RS18885 0.50 -0.3 169,403 + LRK53_RS18885 0.50 -2.1 169,404 - LRK53_RS18885 0.50 -1.0 169,404 - LRK53_RS18885 0.50 -0.5 169,404 - LRK53_RS18885 0.50 -0.9 169,404 - LRK53_RS18885 0.50 +0.1 169,413 + LRK53_RS18885 0.52 +1.1 169,424 + LRK53_RS18885 0.53 -0.8 169,424 + LRK53_RS18885 0.53 +2.1 169,424 + LRK53_RS18885 0.53 +1.1 169,424 + LRK53_RS18885 0.53 -0.3 169,424 + LRK53_RS18885 0.53 -0.1 169,425 - LRK53_RS18885 0.54 -1.0 169,425 - LRK53_RS18885 0.54 -2.1 169,425 - LRK53_RS18885 0.54 -0.9 169,425 - LRK53_RS18885 0.54 -1.2 169,425 - LRK53_RS18885 0.54 -1.7 169,425 - LRK53_RS18885 0.54 -1.1 169,425 - LRK53_RS18885 0.54 +0.1 169,577 + LRK53_RS18885 0.78 +2.1 169,577 + LRK53_RS18885 0.78 +0.5 169,577 + LRK53_RS18885 0.78 -0.1 169,578 - LRK53_RS18885 0.78 -1.2 169,578 - LRK53_RS18885 0.78 -0.5 169,578 - LRK53_RS18885 0.78 +0.4 169,578 - LRK53_RS18885 0.78 -1.9 169,578 - LRK53_RS18885 0.78 +1.3 169,597 + LRK53_RS18885 0.81 -0.6 169,638 + LRK53_RS18885 0.87 -0.4 169,639 - LRK53_RS18885 0.88 -0.7 169,673 + -1.7 169,673 + -0.2 169,673 + +0.9 169,673 + +2.1 169,674 - -0.0 169,674 - -1.7 169,716 + -0.2 169,716 + -0.9 169,716 + +1.1 169,716 + +0.5 169,716 + +0.1 169,716 + +2.1 169,716 + -0.5 169,716 + -0.2 169,717 - -0.1 169,717 - -1.2 169,717 - -2.5 169,737 + +0.1 169,737 + +0.1 169,737 + +1.3 169,737 + -0.1 169,737 + +1.1 169,737 + -0.7 169,737 + -0.5 169,737 + +0.8 169,737 + -0.9 169,737 + -0.6 169,737 + -0.9 169,737 + -0.3 169,737 + -1.1 169,789 + -0.7 169,789 + -1.2 169,829 + -0.4 169,829 + -2.0 169,829 + +2.7 169,829 + -0.1 169,829 + -0.6 169,829 + +1.5 169,829 + +0.5 169,829 + -0.3 169,829 + -0.6 169,829 + -1.2 169,829 + +1.1 169,829 + -1.5 169,829 + +0.4 169,829 + +1.8 169,829 + +0.7 169,830 - -0.5 169,830 - -0.5 169,919 + -0.5 169,919 + -0.9 169,919 + -0.7 169,919 + -1.5 169,919 + -0.5 169,920 - -1.2 169,940 + +0.4 169,940 + +0.3 169,940 + -0.9 169,940 + -0.2 169,940 + -0.5 170,070 + +0.1 170,070 + -1.0 170,071 - +3.1
Or see this region's nucleotide sequence