Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18840 and LRK53_RS18845 are separated by 17 nucleotides LRK53_RS18845 and LRK53_RS18850 overlap by 4 nucleotides LRK53_RS18850 and LRK53_RS18855 are separated by 156 nucleotides
LRK53_RS18840: LRK53_RS18840 - type-F conjugative transfer system secretin TraK, at 159,140 to 160,135
_RS18840
LRK53_RS18845: LRK53_RS18845 - hypothetical protein, at 160,153 to 160,767
_RS18845
LRK53_RS18850: LRK53_RS18850 - type IV conjugative transfer system protein TraL, at 160,764 to 161,054
_RS18850
LRK53_RS18855: LRK53_RS18855 - hypothetical protein, at 161,211 to 161,624
_RS18855
Position (kb) 160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 159.213 kb on + strand at 159.213 kb on + strand at 159.213 kb on + strand at 159.403 kb on + strand, within LRK53_RS18840 at 159.404 kb on - strand, within LRK53_RS18840 at 159.464 kb on + strand, within LRK53_RS18840 at 159.598 kb on - strand, within LRK53_RS18840 at 159.688 kb on - strand, within LRK53_RS18840 at 159.726 kb on - strand, within LRK53_RS18840 at 159.730 kb on - strand, within LRK53_RS18840 at 159.730 kb on - strand, within LRK53_RS18840 at 160.117 kb on + strand at 160.117 kb on + strand at 160.229 kb on + strand, within LRK53_RS18845 at 160.229 kb on + strand, within LRK53_RS18845 at 160.229 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.259 kb on + strand, within LRK53_RS18845 at 160.260 kb on - strand, within LRK53_RS18845 at 160.547 kb on + strand, within LRK53_RS18845 at 160.548 kb on - strand, within LRK53_RS18845 at 160.548 kb on - strand, within LRK53_RS18845 at 160.647 kb on + strand, within LRK53_RS18845 at 160.647 kb on + strand, within LRK53_RS18845 at 160.751 kb on + strand at 160.837 kb on + strand, within LRK53_RS18850 at 160.861 kb on + strand, within LRK53_RS18850 at 160.897 kb on + strand, within LRK53_RS18850 at 160.898 kb on - strand, within LRK53_RS18850 at 160.898 kb on - strand, within LRK53_RS18850 at 160.900 kb on + strand, within LRK53_RS18850 at 160.972 kb on - strand, within LRK53_RS18850 at 161.212 kb on + strand at 161.212 kb on + strand at 161.213 kb on - strand at 161.287 kb on - strand, within LRK53_RS18855 at 161.501 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.594 kb on + strand at 161.595 kb on - strand at 161.595 kb on - strand at 161.595 kb on - strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 159,213 + -0.9 159,213 + +2.6 159,213 + -0.7 159,403 + LRK53_RS18840 0.26 +0.1 159,404 - LRK53_RS18840 0.27 -0.7 159,464 + LRK53_RS18840 0.33 -1.0 159,598 - LRK53_RS18840 0.46 -0.1 159,688 - LRK53_RS18840 0.55 +1.3 159,726 - LRK53_RS18840 0.59 +0.1 159,730 - LRK53_RS18840 0.59 +0.3 159,730 - LRK53_RS18840 0.59 +0.6 160,117 + +0.7 160,117 + -1.9 160,229 + LRK53_RS18845 0.12 -2.3 160,229 + LRK53_RS18845 0.12 +0.9 160,229 + LRK53_RS18845 0.12 -0.3 160,259 + LRK53_RS18845 0.17 -0.7 160,259 + LRK53_RS18845 0.17 -0.8 160,259 + LRK53_RS18845 0.17 -2.4 160,259 + LRK53_RS18845 0.17 -0.7 160,259 + LRK53_RS18845 0.17 -1.0 160,260 - LRK53_RS18845 0.17 -0.7 160,547 + LRK53_RS18845 0.64 +1.7 160,548 - LRK53_RS18845 0.64 -0.5 160,548 - LRK53_RS18845 0.64 -0.0 160,647 + LRK53_RS18845 0.80 +0.6 160,647 + LRK53_RS18845 0.80 -1.9 160,751 + -0.3 160,837 + LRK53_RS18850 0.25 -1.0 160,861 + LRK53_RS18850 0.33 -2.3 160,897 + LRK53_RS18850 0.46 -0.7 160,898 - LRK53_RS18850 0.46 -1.5 160,898 - LRK53_RS18850 0.46 +0.3 160,900 + LRK53_RS18850 0.47 +1.9 160,972 - LRK53_RS18850 0.71 -1.5 161,212 + +0.7 161,212 + +0.3 161,213 - +0.3 161,287 - LRK53_RS18855 0.18 +1.3 161,501 + LRK53_RS18855 0.70 +0.3 161,569 + LRK53_RS18855 0.86 -2.0 161,569 + LRK53_RS18855 0.86 +0.3 161,569 + LRK53_RS18855 0.86 -0.0 161,569 + LRK53_RS18855 0.86 +1.0 161,569 + LRK53_RS18855 0.86 -0.4 161,569 + LRK53_RS18855 0.86 -0.2 161,570 - LRK53_RS18855 0.87 -0.2 161,570 - LRK53_RS18855 0.87 -1.3 161,570 - LRK53_RS18855 0.87 +0.3 161,570 - LRK53_RS18855 0.87 +1.5 161,570 - LRK53_RS18855 0.87 -1.3 161,570 - LRK53_RS18855 0.87 -0.5 161,594 + +0.7 161,595 - -2.2 161,595 - -1.5 161,595 - -0.7 161,615 + +0.3 161,615 + -0.3 161,615 + +0.3 161,615 + +0.4 161,615 + -0.2 161,615 + +1.3 161,615 + +0.0 161,615 + -2.3 161,615 + +0.9 161,616 - +0.3 161,616 - -0.6 161,616 - -0.5 161,616 - +2.9 161,616 - -0.0 161,616 - -0.9 161,616 - +1.3 161,616 - -1.3 161,616 - +0.3 161,616 - -0.0 161,616 - +1.1 161,616 - -0.5 161,752 + +2.3
Or see this region's nucleotide sequence