Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18675

Experiment: NLDM_defined; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS18665 and LRK53_RS18670 are separated by 9 nucleotidesLRK53_RS18670 and LRK53_RS18675 overlap by 41 nucleotidesLRK53_RS18675 and LRK53_RS18680 are separated by 16 nucleotidesLRK53_RS18680 and LRK53_RS18685 are separated by 188 nucleotides LRK53_RS18665: LRK53_RS18665 - hypothetical protein, at 119,475 to 120,146 _RS18665 LRK53_RS18670: LRK53_RS18670 - translesion DNA synthesis-associated protein ImuA, at 120,156 to 120,818 _RS18670 LRK53_RS18675: LRK53_RS18675 - DNA polymerase Y family protein, at 120,778 to 122,163 _RS18675 LRK53_RS18680: LRK53_RS18680 - hypothetical protein, at 122,180 to 122,911 _RS18680 LRK53_RS18685: LRK53_RS18685 - error-prone DNA polymerase, at 123,100 to 126,165 _RS18685 Position (kb) 120 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 119.923 kb on - strand, within LRK53_RS18665at 119.923 kb on - strand, within LRK53_RS18665at 119.923 kb on - strand, within LRK53_RS18665at 119.923 kb on - strand, within LRK53_RS18665at 119.961 kb on + strand, within LRK53_RS18665at 119.961 kb on + strand, within LRK53_RS18665at 120.314 kb on - strand, within LRK53_RS18670at 120.314 kb on - strand, within LRK53_RS18670at 120.316 kb on + strand, within LRK53_RS18670at 120.316 kb on + strand, within LRK53_RS18670at 120.316 kb on + strand, within LRK53_RS18670at 120.316 kb on + strand, within LRK53_RS18670at 120.317 kb on - strand, within LRK53_RS18670at 120.317 kb on - strand, within LRK53_RS18670at 120.317 kb on - strand, within LRK53_RS18670at 120.727 kb on + strand, within LRK53_RS18670at 120.727 kb on + strand, within LRK53_RS18670at 120.727 kb on + strand, within LRK53_RS18670at 120.727 kb on + strand, within LRK53_RS18670at 120.728 kb on - strand, within LRK53_RS18670at 120.728 kb on - strand, within LRK53_RS18670at 120.728 kb on - strand, within LRK53_RS18670at 121.469 kb on + strand, within LRK53_RS18675at 121.470 kb on - strand, within LRK53_RS18675at 121.555 kb on + strand, within LRK53_RS18675at 121.556 kb on - strand, within LRK53_RS18675at 122.071 kb on + strandat 122.113 kb on + strandat 122.113 kb on + strandat 122.114 kb on - strandat 122.114 kb on - strandat 122.233 kb on - strandat 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.481 kb on + strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.482 kb on - strand, within LRK53_RS18680at 122.787 kb on + strand, within LRK53_RS18680at 122.787 kb on + strand, within LRK53_RS18680at 122.788 kb on - strand, within LRK53_RS18680at 122.788 kb on - strand, within LRK53_RS18680at 122.788 kb on - strand, within LRK53_RS18680at 122.788 kb on - strand, within LRK53_RS18680at 122.788 kb on - strand, within LRK53_RS18680at 122.788 kb on - strand, within LRK53_RS18680at 122.857 kb on + strandat 122.857 kb on + strandat 122.857 kb on + strandat 122.857 kb on + strandat 122.857 kb on + strandat 122.857 kb on + strandat 122.858 kb on - strandat 122.858 kb on - strandat 122.858 kb on - strandat 122.858 kb on - strandat 122.858 kb on - strandat 122.858 kb on - strandat 122.858 kb on - strandat 122.902 kb on + strandat 122.902 kb on + strandat 122.903 kb on - strandat 122.986 kb on + strandat 122.986 kb on + strandat 122.986 kb on + strandat 122.986 kb on + strandat 122.986 kb on + strandat 122.986 kb on + strandat 122.987 kb on - strandat 122.987 kb on - strandat 122.987 kb on - strandat 123.060 kb on + strandat 123.060 kb on + strandat 123.060 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.103 kb on + strandat 123.104 kb on - strandat 123.104 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
remove
119,923 - LRK53_RS18665 0.67 +1.0
119,923 - LRK53_RS18665 0.67 +0.3
119,923 - LRK53_RS18665 0.67 -0.0
119,923 - LRK53_RS18665 0.67 +0.6
119,961 + LRK53_RS18665 0.72 +1.5
119,961 + LRK53_RS18665 0.72 +1.3
120,314 - LRK53_RS18670 0.24 +0.1
120,314 - LRK53_RS18670 0.24 +0.3
120,316 + LRK53_RS18670 0.24 +2.6
120,316 + LRK53_RS18670 0.24 -1.9
120,316 + LRK53_RS18670 0.24 +2.3
120,316 + LRK53_RS18670 0.24 +0.7
120,317 - LRK53_RS18670 0.24 +2.0
120,317 - LRK53_RS18670 0.24 -0.7
120,317 - LRK53_RS18670 0.24 +0.3
120,727 + LRK53_RS18670 0.86 -1.2
120,727 + LRK53_RS18670 0.86 -2.0
120,727 + LRK53_RS18670 0.86 -0.3
120,727 + LRK53_RS18670 0.86 +0.3
120,728 - LRK53_RS18670 0.86 -0.0
120,728 - LRK53_RS18670 0.86 +1.3
120,728 - LRK53_RS18670 0.86 -0.5
121,469 + LRK53_RS18675 0.50 -0.6
121,470 - LRK53_RS18675 0.50 -0.3
121,555 + LRK53_RS18675 0.56 -1.0
121,556 - LRK53_RS18675 0.56 -0.5
122,071 + -0.9
122,113 + -0.7
122,113 + +0.3
122,114 - -0.8
122,114 - -1.3
122,233 - -2.3
122,481 + LRK53_RS18680 0.41 +1.3
122,481 + LRK53_RS18680 0.41 -1.5
122,481 + LRK53_RS18680 0.41 +1.3
122,481 + LRK53_RS18680 0.41 -1.7
122,481 + LRK53_RS18680 0.41 -1.0
122,481 + LRK53_RS18680 0.41 +1.3
122,481 + LRK53_RS18680 0.41 -1.3
122,481 + LRK53_RS18680 0.41 -0.3
122,481 + LRK53_RS18680 0.41 -0.7
122,481 + LRK53_RS18680 0.41 -1.1
122,482 - LRK53_RS18680 0.41 -1.7
122,482 - LRK53_RS18680 0.41 -0.2
122,482 - LRK53_RS18680 0.41 +0.8
122,482 - LRK53_RS18680 0.41 +0.5
122,482 - LRK53_RS18680 0.41 +2.0
122,482 - LRK53_RS18680 0.41 -1.5
122,482 - LRK53_RS18680 0.41 +1.8
122,482 - LRK53_RS18680 0.41 -0.5
122,482 - LRK53_RS18680 0.41 -2.8
122,482 - LRK53_RS18680 0.41 -0.5
122,482 - LRK53_RS18680 0.41 +0.1
122,787 + LRK53_RS18680 0.83 +2.3
122,787 + LRK53_RS18680 0.83 +1.7
122,788 - LRK53_RS18680 0.83 -0.8
122,788 - LRK53_RS18680 0.83 -1.8
122,788 - LRK53_RS18680 0.83 +0.3
122,788 - LRK53_RS18680 0.83 +2.1
122,788 - LRK53_RS18680 0.83 -0.7
122,788 - LRK53_RS18680 0.83 -1.0
122,857 + +0.3
122,857 + -0.9
122,857 + -1.3
122,857 + -1.0
122,857 + +2.4
122,857 + -0.3
122,858 - -0.3
122,858 - +0.8
122,858 - -1.3
122,858 - +2.0
122,858 - -1.7
122,858 - -0.6
122,858 - -0.5
122,902 + +0.7
122,902 + -1.0
122,903 - +0.1
122,986 + +0.3
122,986 + -0.3
122,986 + +0.7
122,986 + +0.9
122,986 + -0.4
122,986 + +2.9
122,987 - +0.5
122,987 - +0.8
122,987 - -0.9
123,060 + -0.0
123,060 + +2.9
123,060 + +0.3
123,103 + +0.1
123,103 + +0.1
123,103 + -0.0
123,103 + -0.2
123,103 + +2.3
123,103 + -0.4
123,103 + -0.1
123,103 + -1.0
123,103 + +0.4
123,104 - -1.5
123,104 - -0.2

Or see this region's nucleotide sequence