Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18620 and LRK53_RS18625 overlap by 4 nucleotides LRK53_RS18625 and LRK53_RS18630 are separated by 99 nucleotides
LRK53_RS18620: LRK53_RS18620 - multidrug transporter, at 107,561 to 108,613
_RS18620
LRK53_RS18625: LRK53_RS18625 - TolC family protein, at 108,610 to 110,025
_RS18625
LRK53_RS18630: LRK53_RS18630 - glycosyltransferase family 39 protein, at 110,125 to 111,840
_RS18630
Position (kb) 108
109
110
111 Strain fitness (log2 ratio) -2
-1
0
1
2 at 107.748 kb on + strand, within LRK53_RS18620 at 107.748 kb on + strand, within LRK53_RS18620 at 107.749 kb on - strand, within LRK53_RS18620 at 107.807 kb on + strand, within LRK53_RS18620 at 107.807 kb on + strand, within LRK53_RS18620 at 107.808 kb on - strand, within LRK53_RS18620 at 107.808 kb on - strand, within LRK53_RS18620 at 107.829 kb on + strand, within LRK53_RS18620 at 107.877 kb on + strand, within LRK53_RS18620 at 107.877 kb on + strand, within LRK53_RS18620 at 107.877 kb on + strand, within LRK53_RS18620 at 107.877 kb on + strand, within LRK53_RS18620 at 107.877 kb on + strand, within LRK53_RS18620 at 107.878 kb on - strand, within LRK53_RS18620 at 107.878 kb on - strand, within LRK53_RS18620 at 107.878 kb on - strand, within LRK53_RS18620 at 107.878 kb on - strand, within LRK53_RS18620 at 107.878 kb on - strand, within LRK53_RS18620 at 108.067 kb on + strand, within LRK53_RS18620 at 108.067 kb on + strand, within LRK53_RS18620 at 108.067 kb on + strand, within LRK53_RS18620 at 108.067 kb on + strand, within LRK53_RS18620 at 108.068 kb on - strand, within LRK53_RS18620 at 108.068 kb on - strand, within LRK53_RS18620 at 108.068 kb on - strand, within LRK53_RS18620 at 108.179 kb on + strand, within LRK53_RS18620 at 108.214 kb on + strand, within LRK53_RS18620 at 108.214 kb on + strand, within LRK53_RS18620 at 108.253 kb on - strand, within LRK53_RS18620 at 108.439 kb on + strand, within LRK53_RS18620 at 108.440 kb on - strand, within LRK53_RS18620 at 108.815 kb on + strand, within LRK53_RS18625 at 108.816 kb on - strand, within LRK53_RS18625 at 108.816 kb on - strand, within LRK53_RS18625 at 108.816 kb on - strand, within LRK53_RS18625 at 108.864 kb on + strand, within LRK53_RS18625 at 108.865 kb on - strand, within LRK53_RS18625 at 109.149 kb on - strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.493 kb on + strand, within LRK53_RS18625 at 109.493 kb on + strand, within LRK53_RS18625 at 109.551 kb on + strand, within LRK53_RS18625 at 109.552 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.791 kb on - strand, within LRK53_RS18625 at 109.791 kb on - strand, within LRK53_RS18625 at 109.791 kb on - strand, within LRK53_RS18625 at 109.793 kb on + strand, within LRK53_RS18625 at 109.793 kb on + strand, within LRK53_RS18625 at 109.793 kb on + strand, within LRK53_RS18625 at 109.794 kb on - strand, within LRK53_RS18625 at 109.794 kb on - strand, within LRK53_RS18625 at 110.011 kb on - strand at 110.011 kb on - strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.169 kb on + strand at 110.312 kb on + strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.408 kb on - strand, within LRK53_RS18630 at 110.411 kb on + strand, within LRK53_RS18630 at 110.411 kb on + strand, within LRK53_RS18630 at 110.411 kb on + strand, within LRK53_RS18630 at 110.412 kb on - strand, within LRK53_RS18630 at 110.412 kb on - strand, within LRK53_RS18630 at 110.412 kb on - strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.429 kb on - strand, within LRK53_RS18630 at 110.429 kb on - strand, within LRK53_RS18630 at 110.429 kb on - strand, within LRK53_RS18630 at 110.598 kb on + strand, within LRK53_RS18630 at 110.598 kb on + strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.665 kb on + strand, within LRK53_RS18630 at 110.665 kb on + strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.838 kb on - strand, within LRK53_RS18630 at 110.845 kb on + strand, within LRK53_RS18630 at 110.845 kb on + strand, within LRK53_RS18630 at 110.845 kb on + strand, within LRK53_RS18630 at 110.846 kb on - strand, within LRK53_RS18630 at 110.846 kb on - strand, within LRK53_RS18630 at 110.931 kb on + strand, within LRK53_RS18630
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 107,748 + LRK53_RS18620 0.18 -2.1 107,748 + LRK53_RS18620 0.18 +0.2 107,749 - LRK53_RS18620 0.18 +0.1 107,807 + LRK53_RS18620 0.23 +1.0 107,807 + LRK53_RS18620 0.23 -2.1 107,808 - LRK53_RS18620 0.23 +0.1 107,808 - LRK53_RS18620 0.23 +1.1 107,829 + LRK53_RS18620 0.25 -1.0 107,877 + LRK53_RS18620 0.30 +1.1 107,877 + LRK53_RS18620 0.30 +2.7 107,877 + LRK53_RS18620 0.30 +0.0 107,877 + LRK53_RS18620 0.30 +0.3 107,877 + LRK53_RS18620 0.30 +0.7 107,878 - LRK53_RS18620 0.30 -0.8 107,878 - LRK53_RS18620 0.30 +2.4 107,878 - LRK53_RS18620 0.30 -1.2 107,878 - LRK53_RS18620 0.30 -0.5 107,878 - LRK53_RS18620 0.30 -1.2 108,067 + LRK53_RS18620 0.48 -1.1 108,067 + LRK53_RS18620 0.48 -0.5 108,067 + LRK53_RS18620 0.48 -1.7 108,067 + LRK53_RS18620 0.48 -0.5 108,068 - LRK53_RS18620 0.48 -1.9 108,068 - LRK53_RS18620 0.48 +0.9 108,068 - LRK53_RS18620 0.48 +0.7 108,179 + LRK53_RS18620 0.59 +0.8 108,214 + LRK53_RS18620 0.62 +0.4 108,214 + LRK53_RS18620 0.62 -0.6 108,253 - LRK53_RS18620 0.66 -0.6 108,439 + LRK53_RS18620 0.83 -0.2 108,440 - LRK53_RS18620 0.83 +0.9 108,815 + LRK53_RS18625 0.14 +1.5 108,816 - LRK53_RS18625 0.15 -0.5 108,816 - LRK53_RS18625 0.15 +1.1 108,816 - LRK53_RS18625 0.15 -0.3 108,864 + LRK53_RS18625 0.18 +0.1 108,865 - LRK53_RS18625 0.18 +2.4 109,149 - LRK53_RS18625 0.38 +0.9 109,236 + LRK53_RS18625 0.44 -1.5 109,236 + LRK53_RS18625 0.44 +0.0 109,236 + LRK53_RS18625 0.44 -0.4 109,236 + LRK53_RS18625 0.44 -0.9 109,236 + LRK53_RS18625 0.44 -1.5 109,236 + LRK53_RS18625 0.44 -0.7 109,236 + LRK53_RS18625 0.44 +0.5 109,236 + LRK53_RS18625 0.44 +0.3 109,236 + LRK53_RS18625 0.44 -1.7 109,236 + LRK53_RS18625 0.44 +0.3 109,236 + LRK53_RS18625 0.44 -0.7 109,236 + LRK53_RS18625 0.44 -1.9 109,237 - LRK53_RS18625 0.44 -0.3 109,237 - LRK53_RS18625 0.44 +0.1 109,237 - LRK53_RS18625 0.44 +1.1 109,237 - LRK53_RS18625 0.44 -0.4 109,237 - LRK53_RS18625 0.44 +0.1 109,237 - LRK53_RS18625 0.44 +0.4 109,237 - LRK53_RS18625 0.44 -0.2 109,237 - LRK53_RS18625 0.44 +0.5 109,237 - LRK53_RS18625 0.44 +1.9 109,237 - LRK53_RS18625 0.44 -0.4 109,493 + LRK53_RS18625 0.62 +1.9 109,493 + LRK53_RS18625 0.62 -0.4 109,551 + LRK53_RS18625 0.66 -0.9 109,552 - LRK53_RS18625 0.67 +1.1 109,628 - LRK53_RS18625 0.72 +0.4 109,628 - LRK53_RS18625 0.72 -1.1 109,628 - LRK53_RS18625 0.72 +0.4 109,628 - LRK53_RS18625 0.72 -0.6 109,628 - LRK53_RS18625 0.72 -2.0 109,685 + LRK53_RS18625 0.76 -0.9 109,685 + LRK53_RS18625 0.76 -0.2 109,685 + LRK53_RS18625 0.76 +1.7 109,685 + LRK53_RS18625 0.76 +1.4 109,686 - LRK53_RS18625 0.76 +0.3 109,686 - LRK53_RS18625 0.76 -1.2 109,686 - LRK53_RS18625 0.76 -0.5 109,686 - LRK53_RS18625 0.76 -0.3 109,790 + LRK53_RS18625 0.83 -0.4 109,790 + LRK53_RS18625 0.83 +0.9 109,790 + LRK53_RS18625 0.83 +0.1 109,790 + LRK53_RS18625 0.83 -0.9 109,790 + LRK53_RS18625 0.83 -1.1 109,791 - LRK53_RS18625 0.83 +0.5 109,791 - LRK53_RS18625 0.83 +0.9 109,791 - LRK53_RS18625 0.83 -1.2 109,793 + LRK53_RS18625 0.84 -1.2 109,793 + LRK53_RS18625 0.84 -1.2 109,793 + LRK53_RS18625 0.84 -1.5 109,794 - LRK53_RS18625 0.84 +0.0 109,794 - LRK53_RS18625 0.84 +0.5 110,011 - -0.3 110,011 - -0.5 110,082 + -1.0 110,082 + +0.8 110,082 + +0.1 110,082 + -0.2 110,082 + +0.1 110,082 + -0.5 110,082 + -1.0 110,082 + -1.9 110,083 - +0.2 110,083 - -0.2 110,083 - +0.3 110,083 - -0.9 110,083 - -0.1 110,083 - -1.6 110,083 - -2.0 110,083 - +0.1 110,169 + -0.9 110,312 + LRK53_RS18630 0.11 -0.6 110,391 - LRK53_RS18630 0.16 -1.2 110,391 - LRK53_RS18630 0.16 -1.2 110,391 - LRK53_RS18630 0.16 -0.2 110,391 - LRK53_RS18630 0.16 +0.3 110,408 - LRK53_RS18630 0.16 +0.1 110,411 + LRK53_RS18630 0.17 +0.1 110,411 + LRK53_RS18630 0.17 -2.1 110,411 + LRK53_RS18630 0.17 +0.1 110,412 - LRK53_RS18630 0.17 +0.1 110,412 - LRK53_RS18630 0.17 -2.3 110,412 - LRK53_RS18630 0.17 -1.2 110,428 + LRK53_RS18630 0.18 +1.1 110,428 + LRK53_RS18630 0.18 +0.8 110,428 + LRK53_RS18630 0.18 +0.9 110,428 + LRK53_RS18630 0.18 -1.2 110,429 - LRK53_RS18630 0.18 -0.5 110,429 - LRK53_RS18630 0.18 -0.3 110,429 - LRK53_RS18630 0.18 -1.0 110,598 + LRK53_RS18630 0.28 +0.9 110,598 + LRK53_RS18630 0.28 -1.2 110,599 - LRK53_RS18630 0.28 -0.5 110,599 - LRK53_RS18630 0.28 +0.7 110,599 - LRK53_RS18630 0.28 +0.4 110,599 - LRK53_RS18630 0.28 +0.5 110,665 + LRK53_RS18630 0.31 +0.4 110,665 + LRK53_RS18630 0.31 +2.7 110,666 - LRK53_RS18630 0.32 -0.6 110,666 - LRK53_RS18630 0.32 +0.6 110,666 - LRK53_RS18630 0.32 -0.4 110,666 - LRK53_RS18630 0.32 -0.3 110,838 - LRK53_RS18630 0.42 -0.2 110,845 + LRK53_RS18630 0.42 +1.2 110,845 + LRK53_RS18630 0.42 -0.9 110,845 + LRK53_RS18630 0.42 +0.5 110,846 - LRK53_RS18630 0.42 -0.4 110,846 - LRK53_RS18630 0.42 -1.1 110,931 + LRK53_RS18630 0.47 -1.7
Or see this region's nucleotide sequence