Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17900

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17895 and LRK53_RS17900 are separated by 56 nucleotidesLRK53_RS17900 and LRK53_RS17905 overlap by 4 nucleotides LRK53_RS17895: LRK53_RS17895 - phosphomannomutase/phosphoglucomutase, at 3,930,753 to 3,933,062 _RS17895 LRK53_RS17900: LRK53_RS17900 - dUTP diphosphatase, at 3,933,119 to 3,933,577 _RS17900 LRK53_RS17905: LRK53_RS17905 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 3,933,574 to 3,934,779 _RS17905 Position (kb) 3933 3934Strain fitness (log2 ratio) -2 -1 0 1at 3932.270 kb on - strand, within LRK53_RS17895at 3933.063 kb on - strandat 3933.063 kb on - strandat 3933.063 kb on - strandat 3933.063 kb on - strandat 3933.063 kb on - strandat 3933.252 kb on + strand, within LRK53_RS17900at 3933.253 kb on - strand, within LRK53_RS17900at 3933.253 kb on - strand, within LRK53_RS17900at 3933.253 kb on - strand, within LRK53_RS17900at 3933.253 kb on - strand, within LRK53_RS17900

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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3,932,270 - LRK53_RS17895 0.66 -1.0
3,933,063 - -0.4
3,933,063 - +0.1
3,933,063 - -0.2
3,933,063 - +1.4
3,933,063 - -0.5
3,933,252 + LRK53_RS17900 0.29 +0.9
3,933,253 - LRK53_RS17900 0.29 -0.2
3,933,253 - LRK53_RS17900 0.29 -2.0
3,933,253 - LRK53_RS17900 0.29 +1.4
3,933,253 - LRK53_RS17900 0.29 -0.8

Or see this region's nucleotide sequence