Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17860

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17855 and LRK53_RS17860 are separated by 183 nucleotidesLRK53_RS17860 and LRK53_RS17865 are separated by 13 nucleotides LRK53_RS17855: LRK53_RS17855 - tyrosine--tRNA ligase, at 3,922,642 to 3,923,853 _RS17855 LRK53_RS17860: LRK53_RS17860 - peptidoglycan DD-metalloendopeptidase family protein, at 3,924,037 to 3,925,482 _RS17860 LRK53_RS17865: LRK53_RS17865 - anhydro-N-acetylmuramic acid kinase, at 3,925,496 to 3,926,626 _RS17865 Position (kb) 3924 3925 3926Strain fitness (log2 ratio) -2 -1 0 1 2at 3924.019 kb on + strandat 3924.030 kb on + strandat 3924.119 kb on - strandat 3924.220 kb on - strand, within LRK53_RS17860at 3924.673 kb on + strand, within LRK53_RS17860at 3924.794 kb on - strand, within LRK53_RS17860at 3924.919 kb on + strand, within LRK53_RS17860at 3925.054 kb on + strand, within LRK53_RS17860at 3925.054 kb on + strand, within LRK53_RS17860at 3925.108 kb on + strand, within LRK53_RS17860at 3925.108 kb on + strand, within LRK53_RS17860at 3925.108 kb on + strand, within LRK53_RS17860at 3925.109 kb on - strand, within LRK53_RS17860at 3925.109 kb on - strand, within LRK53_RS17860at 3925.291 kb on + strand, within LRK53_RS17860at 3925.517 kb on + strandat 3925.517 kb on + strandat 3925.517 kb on + strandat 3925.518 kb on - strandat 3926.198 kb on + strand, within LRK53_RS17865at 3926.198 kb on + strand, within LRK53_RS17865at 3926.198 kb on + strand, within LRK53_RS17865at 3926.199 kb on - strand, within LRK53_RS17865at 3926.199 kb on - strand, within LRK53_RS17865at 3926.237 kb on + strand, within LRK53_RS17865at 3926.397 kb on + strand, within LRK53_RS17865at 3926.398 kb on - strand, within LRK53_RS17865

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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3,924,019 + +0.4
3,924,030 + -1.4
3,924,119 - +0.0
3,924,220 - LRK53_RS17860 0.13 -1.6
3,924,673 + LRK53_RS17860 0.44 -0.2
3,924,794 - LRK53_RS17860 0.52 +1.4
3,924,919 + LRK53_RS17860 0.61 -1.0
3,925,054 + LRK53_RS17860 0.70 -0.4
3,925,054 + LRK53_RS17860 0.70 -1.2
3,925,108 + LRK53_RS17860 0.74 -0.2
3,925,108 + LRK53_RS17860 0.74 -0.4
3,925,108 + LRK53_RS17860 0.74 +0.4
3,925,109 - LRK53_RS17860 0.74 +1.4
3,925,109 - LRK53_RS17860 0.74 -0.6
3,925,291 + LRK53_RS17860 0.87 -1.2
3,925,517 + +0.4
3,925,517 + +0.6
3,925,517 + -2.0
3,925,518 - +0.4
3,926,198 + LRK53_RS17865 0.62 +1.4
3,926,198 + LRK53_RS17865 0.62 -1.6
3,926,198 + LRK53_RS17865 0.62 -1.4
3,926,199 - LRK53_RS17865 0.62 -1.2
3,926,199 - LRK53_RS17865 0.62 +0.4
3,926,237 + LRK53_RS17865 0.66 -1.0
3,926,397 + LRK53_RS17865 0.80 +2.4
3,926,398 - LRK53_RS17865 0.80 -0.2

Or see this region's nucleotide sequence