Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17060

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
3,748,082	+		LRK53_RS17055	0.15	+1.2
3,748,082	+		LRK53_RS17055	0.15	+0.6
3,748,082	+		LRK53_RS17055	0.15	-0.8
3,748,242	+		LRK53_RS17055	0.34	-0.0
3,748,242	+		LRK53_RS17055	0.34	+0.5
3,748,242	+		LRK53_RS17055	0.34	-1.6
3,748,242	+		LRK53_RS17055	0.34	-1.1
3,748,242	+		LRK53_RS17055	0.34	+1.7
3,748,243	-		LRK53_RS17055	0.34	+2.2
3,748,243	-		LRK53_RS17055	0.34	-1.1
3,748,243	-		LRK53_RS17055	0.34	+0.2
3,748,243	-		LRK53_RS17055	0.34	-1.5
3,748,243	-		LRK53_RS17055	0.34	+0.2
3,748,243	-		LRK53_RS17055	0.34	+1.2
3,748,243	-		LRK53_RS17055	0.34	-0.4
3,748,243	-		LRK53_RS17055	0.34	-1.8
3,748,243	-		LRK53_RS17055	0.34	-1.2
3,748,243	-		LRK53_RS17055	0.34	-0.3
3,748,243	-		LRK53_RS17055	0.34	-0.4
3,748,243	-		LRK53_RS17055	0.34	-0.4
3,748,284	+		LRK53_RS17055	0.39	-3.0
3,748,284	+		LRK53_RS17055	0.39	-0.2
3,748,285	-		LRK53_RS17055	0.39	-1.7
3,748,285	-		LRK53_RS17055	0.39	-0.3
3,748,285	-		LRK53_RS17055	0.39	-0.4
3,748,285	-		LRK53_RS17055	0.39	-1.1
3,748,285	-		LRK53_RS17055	0.39	-0.3
3,748,451	+		LRK53_RS17055	0.59	+1.2
3,748,467	+		LRK53_RS17055	0.60	-0.1
3,748,467	+		LRK53_RS17055	0.60	-0.2
3,748,468	-		LRK53_RS17055	0.61	-0.3
3,748,468	-		LRK53_RS17055	0.61	-2.2
3,748,503	+		LRK53_RS17055	0.65	-0.7
3,748,503	+		LRK53_RS17055	0.65	+1.0
3,748,504	-		LRK53_RS17055	0.65	-0.9
3,748,504	-		LRK53_RS17055	0.65	-0.0
3,748,504	-		LRK53_RS17055	0.65	+0.2
3,748,504	-		LRK53_RS17055	0.65	+0.8
3,748,722	+				-2.5
3,748,722	+				-0.5
3,748,722	+				-1.2
3,748,722	+				-1.7
3,748,722	+				-0.8
3,748,722	+				-1.1
3,748,722	+				+0.2
3,748,722	+				-0.4
3,748,722	+				-1.1
3,748,722	+				-0.6
3,748,722	+				-0.2
3,748,722	+				-1.8
3,748,723	-				+1.0
3,748,723	-				-1.0
3,748,723	-				-0.2
3,748,723	-				-1.1
3,748,723	-				+0.0
3,748,723	-				-1.1
3,748,723	-				-1.1
3,748,723	-				-0.1
3,748,723	-				-0.1
3,748,743	+				+0.2
3,748,744	-				+0.0
3,748,744	-				-1.6
3,748,744	-				+1.2
3,748,779	+				-3.0
3,748,779	+				-0.8
3,748,780	-				+0.2
3,748,780	-				-0.2
3,748,780	-				+0.4
3,748,780	-				-0.4
3,748,806	-				+1.5
3,749,053	+				-1.3
3,749,053	+				-2.1
3,749,054	-				-0.4
3,749,054	-				+0.5
3,749,054	-				+1.2
3,749,054	-				-0.4
3,749,054	-				-1.4
3,749,054	-				+0.2
3,749,174	-		LRK53_RS17060	0.19	-0.5
3,749,174	-		LRK53_RS17060	0.19	-1.0
3,749,347	+		LRK53_RS17060	0.36	-1.1
3,749,347	+		LRK53_RS17060	0.36	-0.4
3,749,348	-		LRK53_RS17060	0.36	+0.2
3,749,348	-		LRK53_RS17060	0.36	-1.0
3,749,431	+		LRK53_RS17060	0.44	-0.9
3,749,431	+		LRK53_RS17060	0.44	-0.6
3,749,431	+		LRK53_RS17060	0.44	-1.2
3,749,431	+		LRK53_RS17060	0.44	-1.6
3,749,431	+		LRK53_RS17060	0.44	-0.5
3,749,431	+		LRK53_RS17060	0.44	+0.2
3,749,431	+		LRK53_RS17060	0.44	-0.7
3,749,431	+		LRK53_RS17060	0.44	-1.1
3,749,431	+		LRK53_RS17060	0.44	-1.1
3,749,432	-		LRK53_RS17060	0.44	-0.4
3,749,432	-		LRK53_RS17060	0.44	-1.1
3,749,432	-		LRK53_RS17060	0.44	-0.5
3,749,432	-		LRK53_RS17060	0.44	-0.8
3,749,432	-		LRK53_RS17060	0.44	-1.1
3,749,452	+		LRK53_RS17060	0.46	+0.2
3,749,458	+		LRK53_RS17060	0.47	+1.2
3,749,474	-		LRK53_RS17060	0.48	-0.4
3,749,474	-		LRK53_RS17060	0.48	-0.9
3,749,527	+		LRK53_RS17060	0.53	+1.8
3,749,527	+		LRK53_RS17060	0.53	-2.4
3,749,527	+		LRK53_RS17060	0.53	-0.8
3,749,528	-		LRK53_RS17060	0.53	-0.2
3,749,528	-		LRK53_RS17060	0.53	-2.0
3,749,528	-		LRK53_RS17060	0.53	+3.5
3,749,528	-		LRK53_RS17060	0.53	-0.5
3,749,528	-		LRK53_RS17060	0.53	+0.0
3,749,578	+		LRK53_RS17060	0.58	+0.4
3,749,579	-		LRK53_RS17060	0.58	-1.1
3,749,617	+		LRK53_RS17060	0.62	+0.1
3,749,623	+		LRK53_RS17060	0.63	+0.7
3,749,623	+		LRK53_RS17060	0.63	-0.8
3,749,698	+		LRK53_RS17060	0.70	+0.1
3,749,698	+		LRK53_RS17060	0.70	+1.2
3,749,698	+		LRK53_RS17060	0.70	-0.8
3,749,698	+		LRK53_RS17060	0.70	+0.5
3,749,698	+		LRK53_RS17060	0.70	-0.3
3,749,698	+		LRK53_RS17060	0.70	-1.2
3,749,698	+		LRK53_RS17060	0.70	-1.6
3,749,698	+		LRK53_RS17060	0.70	+0.6
3,749,698	+		LRK53_RS17060	0.70	-1.6
3,749,698	+		LRK53_RS17060	0.70	+1.2
3,749,698	+		LRK53_RS17060	0.70	-1.4
3,749,698	+		LRK53_RS17060	0.70	-0.4
3,749,698	+		LRK53_RS17060	0.70	+2.5
3,749,698	+		LRK53_RS17060	0.70	+0.2
3,749,699	-		LRK53_RS17060	0.70	-0.4
3,749,699	-		LRK53_RS17060	0.70	+0.2
3,749,699	-		LRK53_RS17060	0.70	-1.6
3,749,699	-		LRK53_RS17060	0.70	-1.6
3,749,699	-		LRK53_RS17060	0.70	-0.4
3,749,699	-		LRK53_RS17060	0.70	+0.0
3,749,740	+		LRK53_RS17060	0.74	+0.1
3,749,741	-		LRK53_RS17060	0.74	+0.0
3,749,741	-		LRK53_RS17060	0.74	-1.6
3,749,816	-		LRK53_RS17060	0.81	-2.0
3,749,816	-		LRK53_RS17060	0.81	-0.1
3,749,827	+		LRK53_RS17060	0.83	-1.0
3,749,828	-		LRK53_RS17060	0.83	-1.5
3,749,828	-		LRK53_RS17060	0.83	-0.6
3,749,995	+				-0.8
3,749,996	-				+1.2
3,749,996	-				-0.5
3,749,996	-				+0.5
3,750,075	+				+0.2
3,750,076	+				-0.1
3,750,076	+				+1.6
3,750,076	+				+1.0
3,750,076	+				+1.2
3,750,076	+				-0.8
3,750,077	-				+1.5
3,750,077	-				+1.2
3,750,077	-				+1.2
3,750,077	-				+1.2
3,750,077	-				+1.2
3,750,077	-				-0.8
3,750,077	-				-0.6
3,750,077	-				+0.2
3,750,095	+				+0.8
3,750,095	+				+0.6
3,750,095	+				-0.6
3,750,095	+				+2.8
3,750,095	+				+0.2
3,750,095	+				+0.2
3,750,095	+				-1.2
3,750,095	+				-1.6
3,750,095	+				-0.4
3,750,095	+				-0.9
3,750,095	+				+0.5
3,750,095	+				-1.6
3,750,095	+				-0.1
3,750,095	+				+0.8
3,750,095	+				-0.8
3,750,095	+				-2.1
3,750,096	-				-1.1
3,750,096	-				+0.6
3,750,096	-				+0.2
3,750,096	-				+2.8
3,750,096	-				-1.4
3,750,096	-				-2.4
3,750,096	-				-1.5
3,750,096	-				-0.4
3,750,096	-				+0.4
3,750,096	-				+0.8
3,750,096	-				-0.8
3,750,096	-				-0.2
3,750,096	-				+0.2
3,750,096	-				-1.4
3,750,096	-				+1.2
3,750,096	-				-0.0
3,750,096	-				+0.9
3,750,096	-				-1.6
3,750,096	-				+1.2
3,750,096	-				-1.5
3,750,096	-				-1.6
3,750,096	-				+0.2
3,750,096	-				+1.6
3,750,097	+				+1.2
3,750,097	+				-0.4
3,750,097	+				+0.2
3,750,097	+				+0.5
3,750,097	+				-1.1
3,750,097	+				-1.0
3,750,097	+				-0.0
3,750,097	+				-1.1
3,750,097	+				+0.2
3,750,097	+				-1.1
3,750,097	+				-2.5
3,750,097	+				+0.7
3,750,097	+				+0.5
3,750,097	+				+0.2
3,750,097	+				-0.2
3,750,097	+				-2.1
3,750,097	+				+0.4
3,750,097	+				+0.5
3,750,097	+				-0.3
3,750,097	+				+1.2
3,750,097	+				+2.2
3,750,097	+				+0.5
3,750,097	+				-0.4
3,750,097	+				-3.1
3,750,097	+				-0.6
3,750,097	+				-0.2
3,750,097	+				+0.5
3,750,097	+				-1.2
3,750,097	+				-1.4
3,750,097	+				-0.4
3,750,097	+				+0.6
3,750,097	+				-0.2
3,750,097	+				-2.1
3,750,097	+				-0.0
3,750,097	+				-0.7
3,750,097	+				-1.2
3,750,097	+				+0.9
3,750,097	+				-0.7
3,750,097	+				+1.2
3,750,097	+				-2.0
3,750,097	+				-0.8
3,750,097	+				-1.0
3,750,097	+				-1.0
3,750,097	+				-0.9
3,750,097	+				+0.7
3,750,097	+				+0.2
3,750,098	-				-2.0
3,750,098	-				+0.5
3,750,098	-				-1.3
3,750,098	-				-1.5
3,750,098	-				+1.2
3,750,098	-				+0.7
3,750,098	-				-0.4
3,750,098	-				-1.4
3,750,098	-				-0.8
3,750,098	-				+0.5
3,750,098	-				-0.6
3,750,098	-				+0.2
3,750,098	-				-1.4
3,750,098	-				+1.8
3,750,098	-				-3.1
3,750,098	-				-0.8
3,750,098	-				-1.6
3,750,098	-				+0.6
3,750,098	-				-0.4
3,750,098	-				-0.6
3,750,098	-				-0.3
3,750,098	-				-0.4
3,750,098	-				+0.4
3,750,098	-				+0.6
3,750,098	-				-0.1
3,750,098	-				-0.5
3,750,098	-				+0.8
3,750,098	-				-0.6
3,750,098	-				-0.3
3,750,098	-				+0.6
3,750,098	-				+0.4
3,750,098	-				-0.1
3,750,098	-				+1.2
3,750,098	-				-1.0
3,750,098	-				+1.2
3,750,098	-				-0.1
3,750,098	-				-0.1
3,750,098	-				+1.2
3,750,098	-				+0.5
3,750,098	-				-0.4
3,750,098	-				-0.8
3,750,098	-				-1.4
3,750,098	-				-0.7
3,750,098	-				-2.5
3,750,098	-				-1.1
3,750,098	-				+1.2
3,750,098	-				-1.1
3,750,098	-				-0.7
3,750,098	-				-0.1
3,750,098	-				-0.4
3,750,098	-				-0.3
3,750,098	-				-1.1
3,750,098	-				+0.2
3,750,098	-				-1.7
3,750,098	-				-1.4
3,750,098	-				-1.3
3,750,098	-				-1.0
3,750,098	-				-0.3
3,750,098	-				+1.2
3,750,098	-				-0.8
3,750,098	-				-0.0
3,750,098	-				+0.5
3,750,098	-				+1.5
3,750,098	-				+1.9
3,750,098	-				+0.2
3,750,098	-				+1.2
3,750,130	+				+0.7
3,750,131	-				-2.4
3,750,131	-				-0.5
3,750,131	-				-1.7
3,750,131	-				-0.4
3,750,363	+		LRK53_RS17065	0.21	-0.3
3,750,363	+		LRK53_RS17065	0.21	-0.2
3,750,364	-		LRK53_RS17065	0.22	-0.4
3,750,364	-		LRK53_RS17065	0.22	-0.5
3,750,364	-		LRK53_RS17065	0.22	+1.2
3,750,364	-		LRK53_RS17065	0.22	+0.2
3,750,441	+		LRK53_RS17065	0.32	+0.0
3,750,441	+		LRK53_RS17065	0.32	-0.1
3,750,441	+		LRK53_RS17065	0.32	-0.4
3,750,441	+		LRK53_RS17065	0.32	-0.5
3,750,442	-		LRK53_RS17065	0.32	-0.6
3,750,442	-		LRK53_RS17065	0.32	-0.2
3,750,442	-		LRK53_RS17065	0.32	-2.0
3,750,442	-		LRK53_RS17065	0.32	+0.3
3,750,442	-		LRK53_RS17065	0.32	+1.2
3,750,468	+		LRK53_RS17065	0.35	-0.1
3,750,468	+		LRK53_RS17065	0.35	-1.1
3,750,468	+		LRK53_RS17065	0.35	-1.1
3,750,468	+		LRK53_RS17065	0.35	-0.4
3,750,468	+		LRK53_RS17065	0.35	-1.1
3,750,468	+		LRK53_RS17065	0.35	-0.1
3,750,468	+		LRK53_RS17065	0.35	+0.2
3,750,468	+		LRK53_RS17065	0.35	+1.2
3,750,468	+		LRK53_RS17065	0.35	-2.7
3,750,469	-		LRK53_RS17065	0.35	+0.2
3,750,469	-		LRK53_RS17065	0.35	+0.2
3,750,927	+				-0.1
3,750,927	+				-1.1
3,750,927	+				-0.4
3,750,927	+				-0.6
3,750,927	+				-1.2
3,750,927	+				-0.1
3,750,928	-				-0.4