Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15970

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
3,502,600	-		LRK53_RS15960	0.79	-0.6
3,502,600	-		LRK53_RS15960	0.79	-0.7
3,502,600	-		LRK53_RS15960	0.79	+0.1
3,502,600	-		LRK53_RS15960	0.79	-2.0
3,502,617	+		LRK53_RS15960	0.80	-1.2
3,502,617	+		LRK53_RS15960	0.80	-0.2
3,502,618	-		LRK53_RS15960	0.80	+0.9
3,502,618	-		LRK53_RS15960	0.80	+2.4
3,502,618	-		LRK53_RS15960	0.80	+1.9
3,502,618	-		LRK53_RS15960	0.80	-0.6
3,502,839	+				-1.7
3,502,839	+				+0.4
3,502,840	-				+1.4
3,502,840	-				-1.2
3,502,840	-				+0.6
3,502,840	-				-0.6
3,503,072	+		LRK53_RS15965	0.26	+2.9
3,503,072	+		LRK53_RS15965	0.26	-0.2
3,503,072	+		LRK53_RS15965	0.26	-0.8
3,503,072	+		LRK53_RS15965	0.26	-2.3
3,503,072	+		LRK53_RS15965	0.26	-2.0
3,503,072	+		LRK53_RS15965	0.26	-0.2
3,503,072	+		LRK53_RS15965	0.26	-1.0
3,503,073	-		LRK53_RS15965	0.26	-1.4
3,503,073	-		LRK53_RS15965	0.26	-1.8
3,503,073	-		LRK53_RS15965	0.26	-0.4
3,503,073	-		LRK53_RS15965	0.26	-1.9
3,503,073	-		LRK53_RS15965	0.26	+0.1
3,503,073	-		LRK53_RS15965	0.26	+0.7
3,503,073	-		LRK53_RS15965	0.26	+0.4
3,503,108	+		LRK53_RS15965	0.33	-0.4
3,503,109	-		LRK53_RS15965	0.33	+0.4
3,503,109	-		LRK53_RS15965	0.33	-1.2
3,503,109	-		LRK53_RS15965	0.33	+2.2
3,503,109	-		LRK53_RS15965	0.33	+0.4
3,503,109	-		LRK53_RS15965	0.33	-1.6
3,503,300	+		LRK53_RS15965	0.69	-1.8
3,503,605	+				-0.4
3,503,605	+				-0.2
3,503,605	+				-0.4
3,503,605	+				-2.0
3,503,605	+				+0.0
3,503,606	-				+1.4
3,503,606	-				-1.6
3,503,620	+				-0.4
3,503,620	+				-1.4
3,503,620	+				+0.4
3,503,620	+				-0.4
3,503,620	+				-1.1
3,503,620	+				-0.4
3,503,620	+				-2.1
3,503,620	+				-1.0
3,503,620	+				-0.8
3,503,803	+		LRK53_RS15970	0.15	+0.9
3,503,803	+		LRK53_RS15970	0.15	-1.4
3,503,803	+		LRK53_RS15970	0.15	+0.4
3,503,804	-		LRK53_RS15970	0.15	+0.5
3,503,804	-		LRK53_RS15970	0.15	+0.7
3,503,804	-		LRK53_RS15970	0.15	-0.6
3,503,804	-		LRK53_RS15970	0.15	-0.2
3,504,127	+		LRK53_RS15970	0.29	-1.8
3,504,127	+		LRK53_RS15970	0.29	-1.2
3,504,127	+		LRK53_RS15970	0.29	-0.6
3,504,128	-		LRK53_RS15970	0.29	+2.1
3,504,128	-		LRK53_RS15970	0.29	-1.0
3,504,128	-		LRK53_RS15970	0.29	+1.4
3,504,128	-		LRK53_RS15970	0.29	-0.2
3,504,128	-		LRK53_RS15970	0.29	-0.3
3,504,128	-		LRK53_RS15970	0.29	+0.1
3,504,128	-		LRK53_RS15970	0.29	-1.4
3,504,142	+		LRK53_RS15970	0.30	+1.4
3,504,142	+		LRK53_RS15970	0.30	-1.9
3,504,142	+		LRK53_RS15970	0.30	-1.0
3,504,142	+		LRK53_RS15970	0.30	+2.4
3,504,142	+		LRK53_RS15970	0.30	-0.1
3,504,142	+		LRK53_RS15970	0.30	-0.8
3,504,142	+		LRK53_RS15970	0.30	+0.0
3,504,143	-		LRK53_RS15970	0.30	-0.2
3,504,143	-		LRK53_RS15970	0.30	-1.4
3,504,143	-		LRK53_RS15970	0.30	-0.1
3,504,143	-		LRK53_RS15970	0.30	+2.1
3,504,145	+		LRK53_RS15970	0.30	-1.0
3,504,146	-		LRK53_RS15970	0.30	+0.4
3,504,146	-		LRK53_RS15970	0.30	-0.6
3,504,529	+		LRK53_RS15970	0.47	-2.2
3,504,529	+		LRK53_RS15970	0.47	-0.6
3,504,529	+		LRK53_RS15970	0.47	-1.6
3,504,529	+		LRK53_RS15970	0.47	+0.4
3,504,529	+		LRK53_RS15970	0.47	+1.1
3,504,529	+		LRK53_RS15970	0.47	+0.8
3,504,529	+		LRK53_RS15970	0.47	+0.1
3,504,529	+		LRK53_RS15970	0.47	-1.0
3,504,529	+		LRK53_RS15970	0.47	-0.2
3,504,529	+		LRK53_RS15970	0.47	-0.2
3,504,529	+		LRK53_RS15970	0.47	+0.8
3,504,530	-		LRK53_RS15970	0.47	-0.3
3,504,530	-		LRK53_RS15970	0.47	-0.9
3,504,530	-		LRK53_RS15970	0.47	-0.6
3,504,530	-		LRK53_RS15970	0.47	-0.2
3,504,530	-		LRK53_RS15970	0.47	-2.6
3,504,530	-		LRK53_RS15970	0.47	-0.2
3,504,530	-		LRK53_RS15970	0.47	-1.0
3,504,739	+		LRK53_RS15970	0.57	+1.4
3,504,739	+		LRK53_RS15970	0.57	-0.6
3,504,739	+		LRK53_RS15970	0.57	+0.4
3,504,739	+		LRK53_RS15970	0.57	-1.2
3,504,739	+		LRK53_RS15970	0.57	-0.2
3,504,739	+		LRK53_RS15970	0.57	-1.1
3,504,739	+		LRK53_RS15970	0.57	-0.3
3,504,739	+		LRK53_RS15970	0.57	-1.8
3,504,739	+		LRK53_RS15970	0.57	-1.7
3,504,739	+		LRK53_RS15970	0.57	-0.2
3,504,739	+		LRK53_RS15970	0.57	-0.6
3,504,739	+		LRK53_RS15970	0.57	-0.7
3,504,739	+		LRK53_RS15970	0.57	+1.4
3,504,739	+		LRK53_RS15970	0.57	-2.2
3,504,739	+		LRK53_RS15970	0.57	-2.8
3,504,740	-		LRK53_RS15970	0.57	+1.4
3,504,740	-		LRK53_RS15970	0.57	+0.4
3,504,740	-		LRK53_RS15970	0.57	-0.8
3,504,740	-		LRK53_RS15970	0.57	+1.4
3,505,006	+		LRK53_RS15970	0.68	-1.9
3,505,006	+		LRK53_RS15970	0.68	+0.2
3,505,006	+		LRK53_RS15970	0.68	-0.8
3,505,006	+		LRK53_RS15970	0.68	-0.8
3,505,007	-		LRK53_RS15970	0.68	+0.2
3,505,007	-		LRK53_RS15970	0.68	-2.2
3,505,021	+		LRK53_RS15970	0.69	-0.4
3,505,021	+		LRK53_RS15970	0.69	-2.1
3,505,021	+		LRK53_RS15970	0.69	-1.2
3,505,021	+		LRK53_RS15970	0.69	-1.2
3,505,022	-		LRK53_RS15970	0.69	-0.6
3,505,022	-		LRK53_RS15970	0.69	-1.6
3,505,151	+		LRK53_RS15970	0.75	-2.9
3,505,151	+		LRK53_RS15970	0.75	-3.0
3,505,151	+		LRK53_RS15970	0.75	-1.0
3,505,151	+		LRK53_RS15970	0.75	-0.4
3,505,151	+		LRK53_RS15970	0.75	-2.4
3,505,152	-		LRK53_RS15970	0.75	+0.2
3,505,318	+		LRK53_RS15970	0.82	-1.0
3,505,318	+		LRK53_RS15970	0.82	-1.2
3,505,318	+		LRK53_RS15970	0.82	+0.9
3,505,318	+		LRK53_RS15970	0.82	-0.9
3,505,318	+		LRK53_RS15970	0.82	-1.2
3,505,318	+		LRK53_RS15970	0.82	-1.5
3,505,318	+		LRK53_RS15970	0.82	-1.8
3,505,318	+		LRK53_RS15970	0.82	-1.0
3,505,318	+		LRK53_RS15970	0.82	-1.8
3,505,318	+		LRK53_RS15970	0.82	-0.3
3,505,318	+		LRK53_RS15970	0.82	-1.2
3,505,318	+		LRK53_RS15970	0.82	-0.5
3,505,318	+		LRK53_RS15970	0.82	-1.7
3,505,318	+		LRK53_RS15970	0.82	-2.5
3,505,319	-		LRK53_RS15970	0.82	-0.6
3,505,319	-		LRK53_RS15970	0.82	-1.8
3,505,319	-		LRK53_RS15970	0.82	-0.2
3,505,319	-		LRK53_RS15970	0.82	-0.2
3,505,319	-		LRK53_RS15970	0.82	+0.0
3,505,319	-		LRK53_RS15970	0.82	+1.8
3,505,319	-		LRK53_RS15970	0.82	+2.7
3,505,319	-		LRK53_RS15970	0.82	-2.0
3,505,319	-		LRK53_RS15970	0.82	+0.1
3,505,319	-		LRK53_RS15970	0.82	-2.2
3,505,319	-		LRK53_RS15970	0.82	-2.2
3,505,319	-		LRK53_RS15970	0.82	-1.5
3,505,516	+				-0.6
3,505,516	+				+1.4
3,505,516	+				-1.0
3,505,516	+				-0.6
3,505,516	+				+0.1
3,505,516	+				-1.2
3,505,516	+				-0.1
3,505,516	+				+0.2
3,505,516	+				+0.6
3,505,516	+				+0.8
3,505,516	+				-2.1
3,505,516	+				+0.4
3,505,516	+				+0.0
3,505,516	+				+0.0
3,505,517	-				+0.6
3,505,517	-				-0.6
3,505,517	-				-0.5
3,505,517	-				-1.1
3,505,517	-				-0.1
3,505,517	-				-0.2
3,505,517	-				-0.6
3,505,517	-				+0.9
3,505,517	-				-1.4
3,505,517	-				+0.8
3,505,517	-				-0.6
3,505,517	-				-0.5
3,505,517	-				+0.4
3,505,517	-				-1.0
3,505,517	-				-0.6
3,505,517	-				-0.1
3,505,517	-				+0.4
3,505,517	-				-1.2
3,505,517	-				-1.8
3,505,525	+				-1.1
3,505,525	+				-0.2
3,505,526	-				+0.4
3,505,526	-				-1.1
3,505,795	+				-0.5
3,505,795	+				-0.4
3,505,795	+				+1.1
3,505,795	+				+0.4
3,505,795	+				+3.2
3,505,795	+				-0.2
3,505,795	+				-1.1
3,505,913	+				-1.0
3,505,913	+				+0.2
3,505,913	+				-0.8
3,505,914	-				-0.3
3,505,925	+				-1.2
3,505,925	+				-0.2
3,505,926	-				-0.2
3,505,926	-				-0.6
3,505,926	-				-0.6
3,505,926	-				-0.6
3,506,110	+		LRK53_RS15975	0.17	-0.8
3,506,118	-		LRK53_RS15975	0.17	-0.6
3,506,118	-		LRK53_RS15975	0.17	-0.2
3,506,118	-		LRK53_RS15975	0.17	+0.6
3,506,171	+		LRK53_RS15975	0.21	+0.7
3,506,171	+		LRK53_RS15975	0.21	-1.1
3,506,171	+		LRK53_RS15975	0.21	+1.4
3,506,204	+		LRK53_RS15975	0.23	+0.7
3,506,204	+		LRK53_RS15975	0.23	+1.9
3,506,204	+		LRK53_RS15975	0.23	+1.2
3,506,204	+		LRK53_RS15975	0.23	-1.0
3,506,204	+		LRK53_RS15975	0.23	-0.8
3,506,204	+		LRK53_RS15975	0.23	+0.3
3,506,205	-		LRK53_RS15975	0.23	-1.6
3,506,205	-		LRK53_RS15975	0.23	+0.0
3,506,205	-		LRK53_RS15975	0.23	+0.8
3,506,205	-		LRK53_RS15975	0.23	+1.4
3,506,218	-		LRK53_RS15975	0.23	-1.6
3,506,240	+		LRK53_RS15975	0.25	+0.4
3,506,240	+		LRK53_RS15975	0.25	+0.0
3,506,240	+		LRK53_RS15975	0.25	-2.7
3,506,241	-		LRK53_RS15975	0.25	+0.0
3,506,241	-		LRK53_RS15975	0.25	-0.6
3,506,241	-		LRK53_RS15975	0.25	-0.4
3,506,241	-		LRK53_RS15975	0.25	-1.9
3,506,241	-		LRK53_RS15975	0.25	-0.6
3,506,241	-		LRK53_RS15975	0.25	+0.1
3,506,241	-		LRK53_RS15975	0.25	-0.4
3,506,241	-		LRK53_RS15975	0.25	+2.9
3,506,241	-		LRK53_RS15975	0.25	-0.3
3,506,256	+		LRK53_RS15975	0.26	-1.2
3,506,257	-		LRK53_RS15975	0.26	+1.4
3,506,257	-		LRK53_RS15975	0.26	-0.3
3,506,258	+		LRK53_RS15975	0.26	+1.8
3,506,258	+		LRK53_RS15975	0.26	+1.6
3,506,258	+		LRK53_RS15975	0.26	+0.1
3,506,258	+		LRK53_RS15975	0.26	+0.6
3,506,258	+		LRK53_RS15975	0.26	-0.0
3,506,259	-		LRK53_RS15975	0.26	+0.6
3,506,259	-		LRK53_RS15975	0.26	-0.2
3,506,259	-		LRK53_RS15975	0.26	-0.2
3,506,259	-		LRK53_RS15975	0.26	-1.4
3,506,259	-		LRK53_RS15975	0.26	+0.3
3,506,259	-		LRK53_RS15975	0.26	+0.2
3,506,259	-		LRK53_RS15975	0.26	-2.0
3,506,259	-		LRK53_RS15975	0.26	-0.2
3,506,316	-		LRK53_RS15975	0.30	+0.3
3,506,316	-		LRK53_RS15975	0.30	+1.8
3,506,316	-		LRK53_RS15975	0.30	-1.1
3,506,316	-		LRK53_RS15975	0.30	-1.2
3,506,334	-		LRK53_RS15975	0.31	-0.2
3,506,541	-		LRK53_RS15975	0.44	-0.4
3,506,541	-		LRK53_RS15975	0.44	-0.1
3,506,541	-		LRK53_RS15975	0.44	+0.3
3,506,603	+		LRK53_RS15975	0.48	-0.4
3,506,603	+		LRK53_RS15975	0.48	+0.4
3,506,603	+		LRK53_RS15975	0.48	-1.4
3,506,603	+		LRK53_RS15975	0.48	-0.6
3,506,604	-		LRK53_RS15975	0.48	-1.1
3,506,604	-		LRK53_RS15975	0.48	+1.4
3,506,604	-		LRK53_RS15975	0.48	+0.0
3,506,604	-		LRK53_RS15975	0.48	-2.1
3,506,667	+		LRK53_RS15975	0.52	-0.6
3,506,668	-		LRK53_RS15975	0.52	-1.3
3,506,669	+		LRK53_RS15975	0.52	-1.3
3,506,669	+		LRK53_RS15975	0.52	+0.3
3,506,669	+		LRK53_RS15975	0.52	+0.6
3,506,669	+		LRK53_RS15975	0.52	-0.5
3,506,669	+		LRK53_RS15975	0.52	-1.9
3,506,669	+		LRK53_RS15975	0.52	+1.2
3,506,669	+		LRK53_RS15975	0.52	-0.6
3,506,669	+		LRK53_RS15975	0.52	-0.2
3,506,669	+		LRK53_RS15975	0.52	-0.2
3,506,669	+		LRK53_RS15975	0.52	-0.2
3,506,670	-		LRK53_RS15975	0.52	-0.6