Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15885

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
3,473,889	-		LRK53_RS15880	0.23	-0.4
3,473,889	-		LRK53_RS15880	0.23	-1.1
3,473,889	-		LRK53_RS15880	0.23	-0.4
3,473,889	-		LRK53_RS15880	0.23	-1.6
3,474,994	+				+1.2
3,474,995	-				-3.1
3,475,007	-				-0.6
3,475,090	+				-0.8
3,475,091	-				+1.2
3,475,429	+		LRK53_RS15885	0.15	+0.2
3,475,429	+		LRK53_RS15885	0.15	-0.8
3,475,429	+		LRK53_RS15885	0.15	-2.6
3,475,429	+		LRK53_RS15885	0.15	-1.0
3,475,429	+		LRK53_RS15885	0.15	-1.6
3,475,429	+		LRK53_RS15885	0.15	-0.7
3,475,429	+		LRK53_RS15885	0.15	-0.7
3,475,429	+		LRK53_RS15885	0.15	-1.1
3,475,429	+		LRK53_RS15885	0.15	-1.8
3,475,429	+		LRK53_RS15885	0.15	-0.3
3,475,430	-		LRK53_RS15885	0.15	+0.2
3,475,430	-		LRK53_RS15885	0.15	-0.4
3,475,430	-		LRK53_RS15885	0.15	+1.2
3,475,430	-		LRK53_RS15885	0.15	-2.1
3,475,430	-		LRK53_RS15885	0.15	-0.7
3,476,128	+		LRK53_RS15885	0.32	-1.6
3,476,128	+		LRK53_RS15885	0.32	-1.0
3,476,128	+		LRK53_RS15885	0.32	+0.2
3,476,557	+		LRK53_RS15885	0.43	-1.0
3,476,557	+		LRK53_RS15885	0.43	-1.9
3,476,558	-		LRK53_RS15885	0.43	-0.1
3,476,558	-		LRK53_RS15885	0.43	-0.1
3,476,558	-		LRK53_RS15885	0.43	-0.8
3,476,785	+		LRK53_RS15885	0.48	+0.0
3,476,785	+		LRK53_RS15885	0.48	+0.0
3,476,847	+		LRK53_RS15885	0.50	-0.8
3,476,847	+		LRK53_RS15885	0.50	+1.2
3,476,847	+		LRK53_RS15885	0.50	-1.1
3,476,847	+		LRK53_RS15885	0.50	-0.5
3,476,847	+		LRK53_RS15885	0.50	-2.0
3,476,847	+		LRK53_RS15885	0.50	-2.8
3,476,848	-		LRK53_RS15885	0.50	-2.7
3,476,848	-		LRK53_RS15885	0.50	-0.4
3,476,848	-		LRK53_RS15885	0.50	-0.5
3,476,848	-		LRK53_RS15885	0.50	-2.0
3,476,848	-		LRK53_RS15885	0.50	-0.7
3,476,857	+		LRK53_RS15885	0.50	-1.0
3,476,857	+		LRK53_RS15885	0.50	-0.7
3,476,857	+		LRK53_RS15885	0.50	-1.4
3,476,857	+		LRK53_RS15885	0.50	-1.6
3,476,858	-		LRK53_RS15885	0.50	-1.2
3,476,858	-		LRK53_RS15885	0.50	-0.5
3,476,858	-		LRK53_RS15885	0.50	+1.2
3,476,858	-		LRK53_RS15885	0.50	-0.6
3,476,858	-		LRK53_RS15885	0.50	-0.1
3,476,933	+		LRK53_RS15885	0.52	-0.5
3,476,934	-		LRK53_RS15885	0.52	-1.4
3,477,021	+		LRK53_RS15885	0.54	-0.8
3,477,021	+		LRK53_RS15885	0.54	+0.8
3,477,021	+		LRK53_RS15885	0.54	-1.8
3,477,021	+		LRK53_RS15885	0.54	+0.8
3,477,021	+		LRK53_RS15885	0.54	-1.1
3,477,021	+		LRK53_RS15885	0.54	-1.0
3,477,021	+		LRK53_RS15885	0.54	-1.4
3,477,022	-		LRK53_RS15885	0.54	+0.2
3,477,022	-		LRK53_RS15885	0.54	-2.2
3,477,022	-		LRK53_RS15885	0.54	+0.4
3,477,022	-		LRK53_RS15885	0.54	+1.2
3,477,022	-		LRK53_RS15885	0.54	-0.4
3,477,022	-		LRK53_RS15885	0.54	-2.0
3,477,022	-		LRK53_RS15885	0.54	+1.2
3,477,022	-		LRK53_RS15885	0.54	-0.4
3,477,022	-		LRK53_RS15885	0.54	-0.1
3,477,151	+		LRK53_RS15885	0.57	-0.0
3,477,151	+		LRK53_RS15885	0.57	-1.6
3,477,371	+		LRK53_RS15885	0.63	+1.2
3,477,596	-		LRK53_RS15885	0.68	-0.3
3,477,596	-		LRK53_RS15885	0.68	-0.1
3,477,596	-		LRK53_RS15885	0.68	-0.4
3,477,709	+		LRK53_RS15885	0.71	-1.2
3,477,709	+		LRK53_RS15885	0.71	-0.6
3,477,746	-		LRK53_RS15885	0.72	-0.8
3,477,859	+		LRK53_RS15885	0.75	-0.2
3,477,859	+		LRK53_RS15885	0.75	-1.1
3,477,860	-		LRK53_RS15885	0.75	-0.4
3,477,886	+		LRK53_RS15885	0.76	-2.5
3,478,285	+		LRK53_RS15885	0.86	-0.5
3,478,286	-		LRK53_RS15885	0.86	-1.6
3,478,286	-		LRK53_RS15885	0.86	+0.2
3,478,788	+				-2.7
3,478,788	+				-2.1
3,478,789	-				-0.8
3,478,871	+				-0.3
3,478,871	+				-1.4
3,478,871	+				+0.1
3,478,871	+				-0.6
3,478,871	+				-1.6
3,478,871	+				+1.6
3,478,871	+				-0.1
3,478,871	+				-0.4
3,478,871	+				-1.1
3,478,871	+				+0.2
3,478,871	+				+0.6
3,478,871	+				+1.2
3,478,871	+				+0.2
3,478,871	+				-1.1
3,478,871	+				+0.0
3,478,871	+				-1.6
3,478,871	+				-1.0
3,478,872	-				-1.2
3,478,872	-				+0.9
3,478,872	-				-0.8
3,478,872	-				-2.5
3,478,872	-				-0.6
3,478,872	-				+0.3
3,478,872	-				-0.2
3,478,872	-				-1.1
3,478,872	-				+0.4
3,478,872	-				+0.3
3,478,872	-				-0.5
3,478,872	-				-0.1
3,478,872	-				-0.6
3,478,872	-				-1.0
3,479,074	+		LRK53_RS15890	0.17	+1.2
3,479,074	+		LRK53_RS15890	0.17	-2.0
3,479,074	+		LRK53_RS15890	0.17	-1.6
3,479,074	+		LRK53_RS15890	0.17	-0.4
3,479,075	-		LRK53_RS15890	0.17	+0.3
3,479,075	-		LRK53_RS15890	0.17	-0.4
3,479,075	-		LRK53_RS15890	0.17	-0.6
3,479,075	-		LRK53_RS15890	0.17	+2.2
3,479,075	-		LRK53_RS15890	0.17	-0.4
3,479,075	-		LRK53_RS15890	0.17	+0.8
3,479,075	-		LRK53_RS15890	0.17	-0.5
3,479,075	-		LRK53_RS15890	0.17	+0.4
3,479,075	-		LRK53_RS15890	0.17	+2.2
3,479,083	+		LRK53_RS15890	0.19	+1.8
3,479,083	+		LRK53_RS15890	0.19	-1.6
3,479,083	+		LRK53_RS15890	0.19	+0.8
3,479,083	+		LRK53_RS15890	0.19	-0.0
3,479,083	+		LRK53_RS15890	0.19	-0.0
3,479,084	-		LRK53_RS15890	0.19	-0.3
3,479,161	+		LRK53_RS15890	0.35	-0.7
3,479,161	+		LRK53_RS15890	0.35	-0.4
3,479,162	-		LRK53_RS15890	0.35	+0.2
3,479,162	-		LRK53_RS15890	0.35	-0.5
3,479,461	+				+0.0
3,479,461	+				-0.7
3,479,462	-				+0.4
3,479,462	-				-1.1
3,479,462	-				-0.4
3,479,462	-				-1.1
3,479,462	-				-2.6
3,479,462	-				-1.1
3,479,584	+				-0.4
3,479,584	+				+1.0
3,479,585	-				+0.0
3,479,585	-				-2.0
3,479,585	-				-0.0
3,479,770	+				-2.3
3,479,770	+				-0.8
3,479,770	+				-0.3
3,479,770	+				+1.2
3,479,770	+				-1.4
3,479,770	+				-1.6
3,479,770	+				-1.8
3,479,770	+				-1.5
3,479,771	-				-1.5
3,479,771	-				+0.8
3,479,771	-				+0.2
3,479,771	-				-1.6
3,479,771	-				-2.6
3,479,771	-				-2.2
3,479,771	-				+0.0
3,479,860	+				-0.2
3,479,860	+				-0.7
3,479,861	-				+1.2
3,479,861	-				-0.2