Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15670 and LRK53_RS15675 are separated by 91 nucleotides LRK53_RS15675 and LRK53_RS15680 are separated by 207 nucleotides
LRK53_RS15670: LRK53_RS15670 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,432,541 to 3,433,800
_RS15670
LRK53_RS15675: LRK53_RS15675 - BolA/IbaG family iron-sulfur metabolism protein, at 3,433,892 to 3,434,134
_RS15675
LRK53_RS15680: LRK53_RS15680 - KpsF/GutQ family sugar-phosphate isomerase, at 3,434,342 to 3,435,352
_RS15680
Position (kb)
3433
3434
3435 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3433.984 kb on - strand, within LRK53_RS15675 at 3433.984 kb on - strand, within LRK53_RS15675 at 3433.984 kb on - strand, within LRK53_RS15675 at 3433.984 kb on - strand, within LRK53_RS15675 at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.209 kb on - strand at 3434.217 kb on - strand at 3434.217 kb on - strand at 3434.217 kb on - strand at 3434.217 kb on - strand at 3434.217 kb on - strand at 3434.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 3,433,984 - LRK53_RS15675 0.38 -2.2 3,433,984 - LRK53_RS15675 0.38 -1.1 3,433,984 - LRK53_RS15675 0.38 -1.6 3,433,984 - LRK53_RS15675 0.38 -2.9 3,434,209 - -0.2 3,434,209 - -0.7 3,434,209 - -1.1 3,434,209 - +0.5 3,434,209 - +0.6 3,434,209 - +1.0 3,434,209 - -0.4 3,434,209 - +0.0 3,434,209 - +0.0 3,434,209 - -0.4 3,434,209 - -1.6 3,434,209 - +0.2 3,434,217 - +0.9 3,434,217 - -0.4 3,434,217 - -0.5 3,434,217 - -0.4 3,434,217 - -0.4 3,434,238 - -1.9
Or see this region's nucleotide sequence