Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15675

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15670 and LRK53_RS15675 are separated by 91 nucleotidesLRK53_RS15675 and LRK53_RS15680 are separated by 207 nucleotides LRK53_RS15670: LRK53_RS15670 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,432,541 to 3,433,800 _RS15670 LRK53_RS15675: LRK53_RS15675 - BolA/IbaG family iron-sulfur metabolism protein, at 3,433,892 to 3,434,134 _RS15675 LRK53_RS15680: LRK53_RS15680 - KpsF/GutQ family sugar-phosphate isomerase, at 3,434,342 to 3,435,352 _RS15680 Position (kb) 3433 3434 3435Strain fitness (log2 ratio) -2 -1 0 1 2at 3433.984 kb on - strand, within LRK53_RS15675at 3433.984 kb on - strand, within LRK53_RS15675at 3433.984 kb on - strand, within LRK53_RS15675at 3433.984 kb on - strand, within LRK53_RS15675at 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.209 kb on - strandat 3434.217 kb on - strandat 3434.217 kb on - strandat 3434.217 kb on - strandat 3434.217 kb on - strandat 3434.217 kb on - strandat 3434.217 kb on - strandat 3434.238 kb on - strandat 3434.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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3,433,984 - LRK53_RS15675 0.38 -2.1
3,433,984 - LRK53_RS15675 0.38 -1.0
3,433,984 - LRK53_RS15675 0.38 -1.5
3,433,984 - LRK53_RS15675 0.38 -2.7
3,434,209 - -0.1
3,434,209 - -0.5
3,434,209 - -0.6
3,434,209 - +0.7
3,434,209 - +0.8
3,434,209 - +1.1
3,434,209 - -0.2
3,434,209 - +0.1
3,434,209 - +0.1
3,434,209 - -0.2
3,434,209 - +0.4
3,434,209 - +2.4
3,434,209 - -1.5
3,434,209 - +0.4
3,434,217 - +1.0
3,434,217 - -0.2
3,434,217 - +0.1
3,434,217 - -0.4
3,434,217 - -0.3
3,434,217 - -0.2
3,434,238 - -0.6
3,434,238 - -1.8

Or see this region's nucleotide sequence