Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15365

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
3,354,688	+		LRK53_RS15360	0.27	-0.3
3,354,688	+		LRK53_RS15360	0.27	-1.3
3,354,689	-		LRK53_RS15360	0.27	+0.8
3,354,754	-		LRK53_RS15360	0.32	-0.3
3,354,754	-		LRK53_RS15360	0.32	+0.0
3,354,838	+		LRK53_RS15360	0.39	+1.1
3,354,838	+		LRK53_RS15360	0.39	-1.4
3,354,838	+		LRK53_RS15360	0.39	-0.5
3,354,838	+		LRK53_RS15360	0.39	+1.3
3,354,838	+		LRK53_RS15360	0.39	-1.0
3,354,839	-		LRK53_RS15360	0.39	-2.1
3,354,839	-		LRK53_RS15360	0.39	+0.5
3,354,839	-		LRK53_RS15360	0.39	-0.3
3,354,839	-		LRK53_RS15360	0.39	+0.7
3,354,839	-		LRK53_RS15360	0.39	+1.3
3,354,839	-		LRK53_RS15360	0.39	+0.3
3,354,839	-		LRK53_RS15360	0.39	-2.1
3,354,839	-		LRK53_RS15360	0.39	-0.1
3,354,865	+		LRK53_RS15360	0.41	-1.4
3,354,865	+		LRK53_RS15360	0.41	-1.1
3,354,865	+		LRK53_RS15360	0.41	+0.5
3,354,866	-		LRK53_RS15360	0.41	+0.4
3,354,904	-		LRK53_RS15360	0.44	-1.4
3,354,980	+		LRK53_RS15360	0.49	-0.5
3,354,980	+		LRK53_RS15360	0.49	-0.2
3,354,981	-		LRK53_RS15360	0.49	-0.6
3,355,014	+		LRK53_RS15360	0.52	-0.9
3,355,014	+		LRK53_RS15360	0.52	-2.1
3,355,014	+		LRK53_RS15360	0.52	-0.3
3,355,015	-		LRK53_RS15360	0.52	-0.1
3,355,015	-		LRK53_RS15360	0.52	-0.6
3,355,015	-		LRK53_RS15360	0.52	-0.3
3,355,015	-		LRK53_RS15360	0.52	+0.2
3,355,018	+		LRK53_RS15360	0.52	+0.3
3,355,018	+		LRK53_RS15360	0.52	-0.9
3,355,018	+		LRK53_RS15360	0.52	+1.7
3,355,018	+		LRK53_RS15360	0.52	-0.9
3,355,018	+		LRK53_RS15360	0.52	+0.1
3,355,019	-		LRK53_RS15360	0.52	-0.3
3,355,019	-		LRK53_RS15360	0.52	-0.4
3,355,019	-		LRK53_RS15360	0.52	-0.6
3,355,019	-		LRK53_RS15360	0.52	-1.8
3,355,019	-		LRK53_RS15360	0.52	+0.3
3,355,019	-		LRK53_RS15360	0.52	+0.1
3,355,025	+		LRK53_RS15360	0.53	+0.3
3,355,101	+		LRK53_RS15360	0.58	-0.2
3,355,102	-		LRK53_RS15360	0.59	+1.3
3,355,102	-		LRK53_RS15360	0.59	+1.3
3,355,102	-		LRK53_RS15360	0.59	-0.2
3,355,233	+		LRK53_RS15360	0.68	-0.1
3,355,233	+		LRK53_RS15360	0.68	+0.1
3,355,233	+		LRK53_RS15360	0.68	-0.9
3,355,236	+		LRK53_RS15360	0.69	-0.7
3,355,237	-		LRK53_RS15360	0.69	-2.4
3,355,263	-		LRK53_RS15360	0.71	+0.8
3,355,288	+		LRK53_RS15360	0.73	-1.6
3,355,289	-		LRK53_RS15360	0.73	+1.7
3,355,289	-		LRK53_RS15360	0.73	-1.6
3,355,518	+		LRK53_RS15360	0.90	+0.7
3,355,518	+		LRK53_RS15360	0.90	-1.3
3,355,518	+		LRK53_RS15360	0.90	-1.9
3,355,519	-				+0.3
3,355,519	-				-2.6
3,355,554	+				+0.5
3,355,554	+				-0.7
3,355,554	+				+0.4
3,355,555	-				+3.1
3,355,555	-				+0.5
3,355,585	+				-0.2
3,355,585	+				-1.4
3,355,586	-				+0.3
3,355,587	+				+0.0
3,355,587	+				+1.3
3,355,587	+				-0.1
3,355,587	+				+1.7
3,355,587	+				-0.2
3,355,587	+				+0.8
3,355,587	+				-0.5
3,355,588	-				+0.5
3,355,588	-				+0.1
3,355,588	-				-1.2
3,355,588	-				-0.8
3,355,588	-				+0.1
3,355,588	-				-0.3
3,355,588	-				+0.5
3,355,588	-				-2.0
3,355,730	+				-1.2
3,355,730	+				-0.3
3,355,730	+				+0.9
3,355,730	+				-0.4
3,355,730	+				+1.4
3,355,730	+				-0.2
3,355,731	-				-0.2
3,355,731	-				-3.2
3,355,731	-				-0.3
3,355,731	-				+0.5
3,356,076	-		LRK53_RS15365	0.38	+1.7
3,356,076	-		LRK53_RS15365	0.38	+1.5
3,356,076	-		LRK53_RS15365	0.38	-0.3
3,356,076	-		LRK53_RS15365	0.38	-1.1
3,356,085	+		LRK53_RS15365	0.39	-0.6
3,356,085	+		LRK53_RS15365	0.39	-2.7
3,356,085	+		LRK53_RS15365	0.39	-0.7
3,356,085	+		LRK53_RS15365	0.39	-0.5
3,356,085	+		LRK53_RS15365	0.39	+1.3
3,356,086	-		LRK53_RS15365	0.39	-0.9
3,356,086	-		LRK53_RS15365	0.39	+1.1
3,356,086	-		LRK53_RS15365	0.39	+0.3
3,356,086	-		LRK53_RS15365	0.39	-1.1
3,356,192	+		LRK53_RS15365	0.48	+0.8
3,356,193	-		LRK53_RS15365	0.48	+0.4
3,356,252	+		LRK53_RS15365	0.54	-1.0
3,356,252	+		LRK53_RS15365	0.54	-0.3
3,356,252	+		LRK53_RS15365	0.54	+1.8
3,356,252	+		LRK53_RS15365	0.54	-0.7
3,356,252	+		LRK53_RS15365	0.54	+0.1
3,356,252	+		LRK53_RS15365	0.54	-0.1
3,356,253	-		LRK53_RS15365	0.54	+1.3
3,356,253	-		LRK53_RS15365	0.54	+0.7
3,356,253	-		LRK53_RS15365	0.54	-0.1
3,356,253	-		LRK53_RS15365	0.54	+1.0
3,356,253	-		LRK53_RS15365	0.54	+0.3
3,356,253	-		LRK53_RS15365	0.54	+2.8
3,356,253	-		LRK53_RS15365	0.54	+0.6
3,356,253	-		LRK53_RS15365	0.54	-0.0
3,356,253	-		LRK53_RS15365	0.54	+1.1
3,356,253	-		LRK53_RS15365	0.54	+0.3
3,356,253	-		LRK53_RS15365	0.54	-0.4
3,356,256	+		LRK53_RS15365	0.54	+0.6
3,356,256	+		LRK53_RS15365	0.54	-0.7
3,356,256	+		LRK53_RS15365	0.54	-0.3
3,356,256	+		LRK53_RS15365	0.54	+0.3
3,356,257	-		LRK53_RS15365	0.54	-0.6
3,356,257	-		LRK53_RS15365	0.54	-0.2
3,356,257	-		LRK53_RS15365	0.54	-2.2
3,356,257	-		LRK53_RS15365	0.54	-1.3
3,356,257	-		LRK53_RS15365	0.54	+2.5
3,356,257	-		LRK53_RS15365	0.54	-2.3
3,356,257	-		LRK53_RS15365	0.54	+0.4
3,356,442	+		LRK53_RS15365	0.71	-1.2
3,356,442	+		LRK53_RS15365	0.71	+0.8
3,356,442	+		LRK53_RS15365	0.71	-0.1
3,356,442	+		LRK53_RS15365	0.71	-0.3
3,356,442	+		LRK53_RS15365	0.71	-1.9
3,356,442	+		LRK53_RS15365	0.71	+0.4
3,356,443	-		LRK53_RS15365	0.71	-0.3
3,356,443	-		LRK53_RS15365	0.71	+0.2
3,356,443	-		LRK53_RS15365	0.71	-0.3
3,356,443	-		LRK53_RS15365	0.71	-1.3
3,356,443	-		LRK53_RS15365	0.71	-1.9
3,356,443	-		LRK53_RS15365	0.71	+0.5
3,356,443	-		LRK53_RS15365	0.71	-0.1
3,356,443	-		LRK53_RS15365	0.71	+0.8
3,356,457	+		LRK53_RS15365	0.72	-0.4
3,356,457	+		LRK53_RS15365	0.72	-1.5
3,356,582	+		LRK53_RS15365	0.83	+0.0
3,356,582	+		LRK53_RS15365	0.83	-2.1
3,356,582	+		LRK53_RS15365	0.83	+1.3
3,356,582	+		LRK53_RS15365	0.83	-0.1
3,356,582	+		LRK53_RS15365	0.83	-0.6
3,356,582	+		LRK53_RS15365	0.83	+0.4
3,356,583	-		LRK53_RS15365	0.83	+1.3
3,356,583	-		LRK53_RS15365	0.83	-0.6
3,356,583	-		LRK53_RS15365	0.83	-0.0
3,356,600	+		LRK53_RS15365	0.85	-0.6
3,356,633	+		LRK53_RS15365	0.88	-0.4
3,356,633	+		LRK53_RS15365	0.88	-2.7
3,356,633	+		LRK53_RS15365	0.88	+0.3
3,356,633	+		LRK53_RS15365	0.88	-0.9
3,356,633	+		LRK53_RS15365	0.88	+2.3
3,356,633	+		LRK53_RS15365	0.88	-0.9
3,356,633	+		LRK53_RS15365	0.88	-0.2
3,356,634	-		LRK53_RS15365	0.88	+1.3
3,356,634	-		LRK53_RS15365	0.88	-1.2
3,356,634	-		LRK53_RS15365	0.88	-0.3
3,356,636	+		LRK53_RS15365	0.88	+0.3
3,356,636	+		LRK53_RS15365	0.88	+1.0
3,356,636	+		LRK53_RS15365	0.88	-0.5
3,356,637	-		LRK53_RS15365	0.88	+0.7
3,356,731	+				-0.3
3,356,731	+				+0.3
3,356,731	+				-0.8
3,356,732	-				-0.1
3,356,732	-				+1.7
3,356,982	+		LRK53_RS15370	0.18	+0.6
3,356,982	+		LRK53_RS15370	0.18	+0.1
3,356,982	+		LRK53_RS15370	0.18	-0.7
3,356,982	+		LRK53_RS15370	0.18	-3.6
3,356,983	-		LRK53_RS15370	0.18	-0.3
3,357,049	+		LRK53_RS15370	0.23	-0.3
3,357,050	-		LRK53_RS15370	0.24	-0.5
3,357,092	-		LRK53_RS15370	0.27	-0.9
3,357,154	+		LRK53_RS15370	0.32	+0.3
3,357,154	+		LRK53_RS15370	0.32	-0.7
3,357,154	+		LRK53_RS15370	0.32	+0.8
3,357,155	-		LRK53_RS15370	0.32	-0.8
3,357,155	-		LRK53_RS15370	0.32	-1.3
3,357,155	-		LRK53_RS15370	0.32	-0.6
3,357,155	-		LRK53_RS15370	0.32	+0.7
3,357,155	-		LRK53_RS15370	0.32	-0.3
3,357,245	+		LRK53_RS15370	0.40	-1.7
3,357,245	+		LRK53_RS15370	0.40	-0.1
3,357,245	+		LRK53_RS15370	0.40	-0.9
3,357,245	+		LRK53_RS15370	0.40	-0.0
3,357,349	+		LRK53_RS15370	0.48	+0.5
3,357,349	+		LRK53_RS15370	0.48	-1.7
3,357,349	+		LRK53_RS15370	0.48	-1.6
3,357,349	+		LRK53_RS15370	0.48	-1.0
3,357,349	+		LRK53_RS15370	0.48	-1.2
3,357,349	+		LRK53_RS15370	0.48	-0.7
3,357,349	+		LRK53_RS15370	0.48	+1.1
3,357,349	+		LRK53_RS15370	0.48	-0.3
3,357,349	+		LRK53_RS15370	0.48	-0.0
3,357,349	+		LRK53_RS15370	0.48	-1.4
3,357,349	+		LRK53_RS15370	0.48	-0.0
3,357,349	+		LRK53_RS15370	0.48	-1.9
3,357,349	+		LRK53_RS15370	0.48	-0.1
3,357,349	+		LRK53_RS15370	0.48	+0.3
3,357,349	+		LRK53_RS15370	0.48	-1.9
3,357,349	+		LRK53_RS15370	0.48	-0.6
3,357,349	+		LRK53_RS15370	0.48	-0.2
3,357,350	-		LRK53_RS15370	0.48	-1.9
3,357,350	-		LRK53_RS15370	0.48	+0.5
3,357,350	-		LRK53_RS15370	0.48	+0.2
3,357,350	-		LRK53_RS15370	0.48	-0.4
3,357,350	-		LRK53_RS15370	0.48	+0.5
3,357,350	-		LRK53_RS15370	0.48	+0.0
3,357,350	-		LRK53_RS15370	0.48	+0.4
3,357,350	-		LRK53_RS15370	0.48	+0.8
3,357,350	-		LRK53_RS15370	0.48	-0.1
3,357,350	-		LRK53_RS15370	0.48	+0.5
3,357,350	-		LRK53_RS15370	0.48	+0.3
3,357,350	-		LRK53_RS15370	0.48	-1.3
3,357,350	-		LRK53_RS15370	0.48	+0.3
3,357,350	-		LRK53_RS15370	0.48	+0.7
3,357,350	-		LRK53_RS15370	0.48	+1.5
3,357,384	+		LRK53_RS15370	0.51	-0.8
3,357,384	+		LRK53_RS15370	0.51	+0.1
3,357,384	+		LRK53_RS15370	0.51	-0.2
3,357,384	+		LRK53_RS15370	0.51	-0.3
3,357,385	-		LRK53_RS15370	0.51	-0.7
3,357,385	-		LRK53_RS15370	0.51	+0.0
3,357,458	-		LRK53_RS15370	0.57	-0.2
3,357,458	-		LRK53_RS15370	0.57	+0.9
3,357,482	-		LRK53_RS15370	0.59	-2.7
3,357,482	-		LRK53_RS15370	0.59	+0.4
3,357,529	+		LRK53_RS15370	0.63	+0.0
3,357,529	+		LRK53_RS15370	0.63	-0.7
3,357,529	+		LRK53_RS15370	0.63	-0.7
3,357,529	+		LRK53_RS15370	0.63	-1.6
3,357,530	-		LRK53_RS15370	0.63	+1.7
3,357,530	-		LRK53_RS15370	0.63	+0.8
3,357,635	+		LRK53_RS15370	0.72	+2.0
3,357,635	+		LRK53_RS15370	0.72	+1.0
3,357,636	-		LRK53_RS15370	0.72	+0.8
3,357,671	-		LRK53_RS15370	0.75	-0.3
3,357,671	-		LRK53_RS15370	0.75	-0.7
3,357,671	-		LRK53_RS15370	0.75	+1.5
3,357,673	+		LRK53_RS15370	0.75	+0.5
3,357,674	-		LRK53_RS15370	0.75	-0.7
3,357,674	-		LRK53_RS15370	0.75	-1.7
3,357,674	-		LRK53_RS15370	0.75	-0.3
3,357,674	-		LRK53_RS15370	0.75	+0.3
3,357,674	-		LRK53_RS15370	0.75	+0.5
3,357,674	-		LRK53_RS15370	0.75	+0.4
3,357,674	-		LRK53_RS15370	0.75	-1.2