Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14400

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14395 and LRK53_RS14400 are separated by 206 nucleotidesLRK53_RS14400 and LRK53_RS14405 are separated by 52 nucleotidesLRK53_RS14405 and LRK53_RS14410 are separated by 72 nucleotides LRK53_RS14395: LRK53_RS14395 - cation-translocating P-type ATPase, at 3,153,187 to 3,155,718 _RS14395 LRK53_RS14400: LRK53_RS14400 - TetR family transcriptional regulator, at 3,155,925 to 3,156,533 _RS14400 LRK53_RS14405: LRK53_RS14405 - hypothetical protein, at 3,156,586 to 3,157,005 _RS14405 LRK53_RS14410: LRK53_RS14410 - secretion protein HlyD, at 3,157,078 to 3,158,070 _RS14410 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -2 -1 0 1 2at 3155.074 kb on + strand, within LRK53_RS14395at 3155.074 kb on + strand, within LRK53_RS14395at 3155.074 kb on + strand, within LRK53_RS14395at 3155.075 kb on - strand, within LRK53_RS14395at 3155.075 kb on - strand, within LRK53_RS14395at 3155.075 kb on - strand, within LRK53_RS14395at 3155.075 kb on - strand, within LRK53_RS14395at 3155.075 kb on - strand, within LRK53_RS14395at 3155.075 kb on - strand, within LRK53_RS14395at 3155.204 kb on + strand, within LRK53_RS14395at 3155.204 kb on + strand, within LRK53_RS14395at 3155.204 kb on + strand, within LRK53_RS14395at 3155.204 kb on + strand, within LRK53_RS14395at 3155.204 kb on + strand, within LRK53_RS14395at 3155.205 kb on - strand, within LRK53_RS14395at 3155.205 kb on - strand, within LRK53_RS14395at 3155.205 kb on - strand, within LRK53_RS14395at 3155.233 kb on + strand, within LRK53_RS14395at 3155.233 kb on + strand, within LRK53_RS14395at 3155.233 kb on + strand, within LRK53_RS14395at 3155.233 kb on + strand, within LRK53_RS14395at 3155.233 kb on + strand, within LRK53_RS14395at 3155.233 kb on + strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.234 kb on - strand, within LRK53_RS14395at 3155.327 kb on + strand, within LRK53_RS14395at 3155.327 kb on + strand, within LRK53_RS14395at 3155.361 kb on - strand, within LRK53_RS14395at 3156.212 kb on + strand, within LRK53_RS14400at 3156.721 kb on + strand, within LRK53_RS14405at 3156.721 kb on + strand, within LRK53_RS14405at 3156.721 kb on + strand, within LRK53_RS14405at 3156.721 kb on + strand, within LRK53_RS14405at 3156.722 kb on - strand, within LRK53_RS14405at 3156.722 kb on - strand, within LRK53_RS14405at 3156.766 kb on + strand, within LRK53_RS14405at 3156.766 kb on + strand, within LRK53_RS14405at 3156.767 kb on - strand, within LRK53_RS14405at 3156.767 kb on - strand, within LRK53_RS14405at 3156.767 kb on - strand, within LRK53_RS14405at 3157.165 kb on + strandat 3157.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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3,155,074 + LRK53_RS14395 0.75 +0.3
3,155,074 + LRK53_RS14395 0.75 -0.6
3,155,074 + LRK53_RS14395 0.75 -1.2
3,155,075 - LRK53_RS14395 0.75 -0.0
3,155,075 - LRK53_RS14395 0.75 +1.9
3,155,075 - LRK53_RS14395 0.75 +0.1
3,155,075 - LRK53_RS14395 0.75 -0.1
3,155,075 - LRK53_RS14395 0.75 -0.7
3,155,075 - LRK53_RS14395 0.75 +0.3
3,155,204 + LRK53_RS14395 0.80 +0.3
3,155,204 + LRK53_RS14395 0.80 +1.3
3,155,204 + LRK53_RS14395 0.80 -0.7
3,155,204 + LRK53_RS14395 0.80 -0.5
3,155,204 + LRK53_RS14395 0.80 -1.2
3,155,205 - LRK53_RS14395 0.80 -1.1
3,155,205 - LRK53_RS14395 0.80 +0.3
3,155,205 - LRK53_RS14395 0.80 -0.1
3,155,233 + LRK53_RS14395 0.81 +0.5
3,155,233 + LRK53_RS14395 0.81 -0.7
3,155,233 + LRK53_RS14395 0.81 -2.1
3,155,233 + LRK53_RS14395 0.81 -1.2
3,155,233 + LRK53_RS14395 0.81 -1.6
3,155,233 + LRK53_RS14395 0.81 +1.0
3,155,234 - LRK53_RS14395 0.81 -0.3
3,155,234 - LRK53_RS14395 0.81 -1.0
3,155,234 - LRK53_RS14395 0.81 -1.1
3,155,234 - LRK53_RS14395 0.81 +0.7
3,155,234 - LRK53_RS14395 0.81 +0.6
3,155,234 - LRK53_RS14395 0.81 -0.0
3,155,234 - LRK53_RS14395 0.81 -1.2
3,155,234 - LRK53_RS14395 0.81 +0.3
3,155,234 - LRK53_RS14395 0.81 -1.7
3,155,234 - LRK53_RS14395 0.81 +0.5
3,155,234 - LRK53_RS14395 0.81 +0.1
3,155,327 + LRK53_RS14395 0.85 -0.1
3,155,327 + LRK53_RS14395 0.85 +2.3
3,155,361 - LRK53_RS14395 0.86 -2.1
3,156,212 + LRK53_RS14400 0.47 -1.5
3,156,721 + LRK53_RS14405 0.32 -0.4
3,156,721 + LRK53_RS14405 0.32 +0.9
3,156,721 + LRK53_RS14405 0.32 -1.7
3,156,721 + LRK53_RS14405 0.32 -1.0
3,156,722 - LRK53_RS14405 0.32 -1.0
3,156,722 - LRK53_RS14405 0.32 -1.8
3,156,766 + LRK53_RS14405 0.43 +0.1
3,156,766 + LRK53_RS14405 0.43 +0.2
3,156,767 - LRK53_RS14405 0.43 -1.8
3,156,767 - LRK53_RS14405 0.43 -0.9
3,156,767 - LRK53_RS14405 0.43 +1.9
3,157,165 + -0.6
3,157,166 - +0.1

Or see this region's nucleotide sequence