Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14395 and LRK53_RS14400 are separated by 206 nucleotides LRK53_RS14400 and LRK53_RS14405 are separated by 52 nucleotides LRK53_RS14405 and LRK53_RS14410 are separated by 72 nucleotides
LRK53_RS14395: LRK53_RS14395 - cation-translocating P-type ATPase, at 3,153,187 to 3,155,718
_RS14395
LRK53_RS14400: LRK53_RS14400 - TetR family transcriptional regulator, at 3,155,925 to 3,156,533
_RS14400
LRK53_RS14405: LRK53_RS14405 - hypothetical protein, at 3,156,586 to 3,157,005
_RS14405
LRK53_RS14410: LRK53_RS14410 - secretion protein HlyD, at 3,157,078 to 3,158,070
_RS14410
Position (kb)
3155
3156
3157 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3155.074 kb on + strand, within LRK53_RS14395 at 3155.074 kb on + strand, within LRK53_RS14395 at 3155.074 kb on + strand, within LRK53_RS14395 at 3155.075 kb on - strand, within LRK53_RS14395 at 3155.075 kb on - strand, within LRK53_RS14395 at 3155.075 kb on - strand, within LRK53_RS14395 at 3155.075 kb on - strand, within LRK53_RS14395 at 3155.075 kb on - strand, within LRK53_RS14395 at 3155.075 kb on - strand, within LRK53_RS14395 at 3155.204 kb on + strand, within LRK53_RS14395 at 3155.204 kb on + strand, within LRK53_RS14395 at 3155.204 kb on + strand, within LRK53_RS14395 at 3155.204 kb on + strand, within LRK53_RS14395 at 3155.204 kb on + strand, within LRK53_RS14395 at 3155.205 kb on - strand, within LRK53_RS14395 at 3155.205 kb on - strand, within LRK53_RS14395 at 3155.205 kb on - strand, within LRK53_RS14395 at 3155.233 kb on + strand, within LRK53_RS14395 at 3155.233 kb on + strand, within LRK53_RS14395 at 3155.233 kb on + strand, within LRK53_RS14395 at 3155.233 kb on + strand, within LRK53_RS14395 at 3155.233 kb on + strand, within LRK53_RS14395 at 3155.233 kb on + strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.234 kb on - strand, within LRK53_RS14395 at 3155.327 kb on + strand, within LRK53_RS14395 at 3155.327 kb on + strand, within LRK53_RS14395 at 3155.361 kb on - strand, within LRK53_RS14395 at 3156.212 kb on + strand, within LRK53_RS14400 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.722 kb on - strand, within LRK53_RS14405 at 3156.722 kb on - strand, within LRK53_RS14405 at 3156.766 kb on + strand, within LRK53_RS14405 at 3156.766 kb on + strand, within LRK53_RS14405 at 3156.767 kb on - strand, within LRK53_RS14405 at 3156.767 kb on - strand, within LRK53_RS14405 at 3156.767 kb on - strand, within LRK53_RS14405 at 3157.165 kb on + strand at 3157.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 3,155,074 + LRK53_RS14395 0.75 +0.3 3,155,074 + LRK53_RS14395 0.75 -0.6 3,155,074 + LRK53_RS14395 0.75 -1.2 3,155,075 - LRK53_RS14395 0.75 -0.0 3,155,075 - LRK53_RS14395 0.75 +1.9 3,155,075 - LRK53_RS14395 0.75 +0.1 3,155,075 - LRK53_RS14395 0.75 -0.1 3,155,075 - LRK53_RS14395 0.75 -0.7 3,155,075 - LRK53_RS14395 0.75 +0.3 3,155,204 + LRK53_RS14395 0.80 +0.3 3,155,204 + LRK53_RS14395 0.80 +1.3 3,155,204 + LRK53_RS14395 0.80 -0.7 3,155,204 + LRK53_RS14395 0.80 -0.5 3,155,204 + LRK53_RS14395 0.80 -1.2 3,155,205 - LRK53_RS14395 0.80 -1.1 3,155,205 - LRK53_RS14395 0.80 +0.3 3,155,205 - LRK53_RS14395 0.80 -0.1 3,155,233 + LRK53_RS14395 0.81 +0.5 3,155,233 + LRK53_RS14395 0.81 -0.7 3,155,233 + LRK53_RS14395 0.81 -2.1 3,155,233 + LRK53_RS14395 0.81 -1.2 3,155,233 + LRK53_RS14395 0.81 -1.6 3,155,233 + LRK53_RS14395 0.81 +1.0 3,155,234 - LRK53_RS14395 0.81 -0.3 3,155,234 - LRK53_RS14395 0.81 -1.0 3,155,234 - LRK53_RS14395 0.81 -1.1 3,155,234 - LRK53_RS14395 0.81 +0.7 3,155,234 - LRK53_RS14395 0.81 +0.6 3,155,234 - LRK53_RS14395 0.81 -0.0 3,155,234 - LRK53_RS14395 0.81 -1.2 3,155,234 - LRK53_RS14395 0.81 +0.3 3,155,234 - LRK53_RS14395 0.81 -1.7 3,155,234 - LRK53_RS14395 0.81 +0.5 3,155,234 - LRK53_RS14395 0.81 +0.1 3,155,327 + LRK53_RS14395 0.85 -0.1 3,155,327 + LRK53_RS14395 0.85 +2.3 3,155,361 - LRK53_RS14395 0.86 -2.1 3,156,212 + LRK53_RS14400 0.47 -1.5 3,156,721 + LRK53_RS14405 0.32 -0.4 3,156,721 + LRK53_RS14405 0.32 +0.9 3,156,721 + LRK53_RS14405 0.32 -1.7 3,156,721 + LRK53_RS14405 0.32 -1.0 3,156,722 - LRK53_RS14405 0.32 -1.0 3,156,722 - LRK53_RS14405 0.32 -1.8 3,156,766 + LRK53_RS14405 0.43 +0.1 3,156,766 + LRK53_RS14405 0.43 +0.2 3,156,767 - LRK53_RS14405 0.43 -1.8 3,156,767 - LRK53_RS14405 0.43 -0.9 3,156,767 - LRK53_RS14405 0.43 +1.9 3,157,165 + -0.6 3,157,166 - +0.1
Or see this region's nucleotide sequence