Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13650

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
3,009,074	+		LRK53_RS13645	0.35	-0.2
3,009,126	+		LRK53_RS13645	0.45	-1.2
3,009,126	+		LRK53_RS13645	0.45	-1.2
3,009,127	-		LRK53_RS13645	0.45	-1.4
3,009,214	+		LRK53_RS13645	0.63	-1.8
3,009,214	+		LRK53_RS13645	0.63	-0.8
3,009,214	+		LRK53_RS13645	0.63	+0.4
3,009,214	+		LRK53_RS13645	0.63	+0.8
3,009,214	+		LRK53_RS13645	0.63	+1.2
3,009,214	+		LRK53_RS13645	0.63	+1.2
3,009,215	-		LRK53_RS13645	0.63	-0.3
3,009,215	-		LRK53_RS13645	0.63	-0.7
3,009,215	-		LRK53_RS13645	0.63	-0.6
3,009,215	-		LRK53_RS13645	0.63	-1.0
3,009,215	-		LRK53_RS13645	0.63	-0.7
3,009,215	-		LRK53_RS13645	0.63	-0.8
3,009,215	-		LRK53_RS13645	0.63	-0.4
3,009,215	-		LRK53_RS13645	0.63	-0.6
3,009,215	-		LRK53_RS13645	0.63	-0.7
3,009,215	-		LRK53_RS13645	0.63	+2.5
3,009,220	+		LRK53_RS13645	0.64	-0.3
3,009,220	+		LRK53_RS13645	0.64	-2.8
3,009,220	+		LRK53_RS13645	0.64	-1.4
3,009,220	+		LRK53_RS13645	0.64	-2.0
3,009,220	+		LRK53_RS13645	0.64	-0.8
3,009,220	+		LRK53_RS13645	0.64	-0.4
3,009,220	+		LRK53_RS13645	0.64	+0.2
3,009,221	-		LRK53_RS13645	0.64	+1.2
3,009,221	-		LRK53_RS13645	0.64	-0.1
3,009,221	-		LRK53_RS13645	0.64	-0.7
3,009,221	-		LRK53_RS13645	0.64	-0.8
3,009,221	-		LRK53_RS13645	0.64	+0.2
3,009,221	-		LRK53_RS13645	0.64	+0.4
3,009,221	-		LRK53_RS13645	0.64	-0.4
3,009,221	-		LRK53_RS13645	0.64	+0.2
3,009,221	-		LRK53_RS13645	0.64	-1.2
3,009,221	-		LRK53_RS13645	0.64	-1.1
3,009,221	-		LRK53_RS13645	0.64	-0.4
3,009,221	-		LRK53_RS13645	0.64	-0.3
3,009,221	-		LRK53_RS13645	0.64	-0.3
3,009,221	-		LRK53_RS13645	0.64	+1.2
3,009,336	+		LRK53_RS13645	0.86	+0.3
3,009,336	+		LRK53_RS13645	0.86	-0.6
3,009,336	+		LRK53_RS13645	0.86	-1.3
3,009,336	+		LRK53_RS13645	0.86	-0.1
3,009,336	+		LRK53_RS13645	0.86	-0.3
3,009,337	-		LRK53_RS13645	0.87	-0.3
3,009,337	-		LRK53_RS13645	0.87	-0.2
3,009,383	+				-0.5
3,009,384	-				-0.8
3,009,384	-				-0.3
3,009,458	+				-1.3
3,009,459	-				+1.7
3,009,459	-				-0.1
3,009,540	+				+1.5
3,009,540	+				+1.0
3,009,540	+				-1.8
3,009,540	+				-0.8
3,009,540	+				+1.2
3,009,540	+				-0.9
3,009,540	+				+0.2
3,009,540	+				-1.4
3,009,540	+				-0.7
3,009,540	+				-1.2
3,009,541	-				+0.2
3,009,541	-				+0.0
3,009,541	-				-0.4
3,009,541	-				+0.2
3,009,541	-				-2.0
3,009,541	-				-1.7
3,009,541	-				-0.1
3,009,541	-				-0.8
3,009,541	-				+1.5
3,009,541	-				+0.3
3,009,699	+				+0.8
3,009,764	+				-0.2
3,009,930	+				-1.0
3,009,930	+				+0.7
3,009,930	+				+0.6
3,009,930	+				+1.2
3,009,930	+				+0.2
3,009,930	+				-0.2
3,009,930	+				-1.0
3,009,931	-				-1.7
3,009,931	-				+0.6
3,009,931	-				+0.2
3,009,931	-				-0.8
3,009,966	-				+0.0
3,009,966	-				-0.1
3,010,040	+				-1.3
3,010,040	+				-0.8
3,010,041	-				-0.1
3,010,041	-				+0.7
3,010,041	-				+2.2
3,010,041	-				-0.2
3,010,041	-				-0.8
3,010,097	+				-0.7
3,010,097	+				+1.2
3,010,141	-				+4.0
3,010,260	+		LRK53_RS13650	0.13	+2.2
3,010,260	+		LRK53_RS13650	0.13	-0.0
3,010,260	+		LRK53_RS13650	0.13	-1.1
3,010,260	+		LRK53_RS13650	0.13	-1.3
3,010,260	+		LRK53_RS13650	0.13	+0.1
3,010,261	-		LRK53_RS13650	0.13	-0.3
3,010,261	-		LRK53_RS13650	0.13	+0.2
3,010,261	-		LRK53_RS13650	0.13	+1.0
3,010,261	-		LRK53_RS13650	0.13	-0.2
3,010,261	-		LRK53_RS13650	0.13	-0.4
3,010,415	+		LRK53_RS13650	0.22	+0.6
3,010,415	+		LRK53_RS13650	0.22	+1.2
3,010,415	+		LRK53_RS13650	0.22	+1.2
3,010,415	+		LRK53_RS13650	0.22	-0.4
3,010,415	+		LRK53_RS13650	0.22	+1.2
3,010,415	+		LRK53_RS13650	0.22	-0.9
3,010,415	+		LRK53_RS13650	0.22	-1.4
3,010,415	+		LRK53_RS13650	0.22	-1.0
3,010,415	+		LRK53_RS13650	0.22	-0.6
3,010,415	+		LRK53_RS13650	0.22	-0.4
3,010,415	+		LRK53_RS13650	0.22	-2.5
3,010,415	+		LRK53_RS13650	0.22	-0.1
3,010,415	+		LRK53_RS13650	0.22	+2.2
3,010,415	+		LRK53_RS13650	0.22	-1.4
3,010,415	+		LRK53_RS13650	0.22	-1.5
3,010,416	-		LRK53_RS13650	0.22	+0.2
3,010,416	-		LRK53_RS13650	0.22	+0.0
3,010,416	-		LRK53_RS13650	0.22	-0.3
3,010,416	-		LRK53_RS13650	0.22	+0.4
3,010,416	-		LRK53_RS13650	0.22	-3.2
3,010,416	-		LRK53_RS13650	0.22	-0.8
3,010,416	-		LRK53_RS13650	0.22	-1.4
3,010,416	-		LRK53_RS13650	0.22	-0.7
3,010,416	-		LRK53_RS13650	0.22	-2.0
3,010,416	-		LRK53_RS13650	0.22	-0.6
3,010,416	-		LRK53_RS13650	0.22	-1.4
3,010,416	-		LRK53_RS13650	0.22	+0.5
3,010,416	-		LRK53_RS13650	0.22	+1.2
3,010,416	-		LRK53_RS13650	0.22	-0.8
3,010,556	+		LRK53_RS13650	0.31	-0.5
3,010,556	+		LRK53_RS13650	0.31	-1.2
3,010,556	+		LRK53_RS13650	0.31	-1.5
3,010,556	+		LRK53_RS13650	0.31	-2.2
3,010,556	+		LRK53_RS13650	0.31	-0.3
3,010,556	+		LRK53_RS13650	0.31	-0.4
3,010,556	+		LRK53_RS13650	0.31	-1.0
3,010,556	+		LRK53_RS13650	0.31	+1.2
3,010,556	+		LRK53_RS13650	0.31	-0.2
3,010,556	+		LRK53_RS13650	0.31	-1.4
3,010,557	-		LRK53_RS13650	0.31	+1.2
3,010,557	-		LRK53_RS13650	0.31	+1.2
3,010,557	-		LRK53_RS13650	0.31	+0.4
3,010,557	-		LRK53_RS13650	0.31	+1.6
3,010,557	-		LRK53_RS13650	0.31	-2.2
3,010,557	-		LRK53_RS13650	0.31	-0.5
3,010,559	+		LRK53_RS13650	0.31	-0.4
3,010,560	-		LRK53_RS13650	0.31	+0.3
3,010,647	-		LRK53_RS13650	0.36	-2.4
3,010,647	-		LRK53_RS13650	0.36	-0.8
3,010,721	-		LRK53_RS13650	0.40	-0.7
3,011,003	+		LRK53_RS13650	0.57	-1.0
3,011,003	+		LRK53_RS13650	0.57	+1.2
3,011,003	+		LRK53_RS13650	0.57	-0.7
3,011,003	+		LRK53_RS13650	0.57	+1.2
3,011,003	+		LRK53_RS13650	0.57	+1.0
3,011,003	+		LRK53_RS13650	0.57	-0.3
3,011,003	+		LRK53_RS13650	0.57	+0.2
3,011,003	+		LRK53_RS13650	0.57	+1.4
3,011,003	+		LRK53_RS13650	0.57	-0.4
3,011,003	+		LRK53_RS13650	0.57	+2.2
3,011,003	+		LRK53_RS13650	0.57	-0.1
3,011,003	+		LRK53_RS13650	0.57	-0.1
3,011,003	+		LRK53_RS13650	0.57	-0.4
3,011,003	+		LRK53_RS13650	0.57	+1.1
3,011,003	+		LRK53_RS13650	0.57	-1.2
3,011,003	+		LRK53_RS13650	0.57	+1.2
3,011,003	+		LRK53_RS13650	0.57	-0.7
3,011,003	+		LRK53_RS13650	0.57	+0.2
3,011,003	+		LRK53_RS13650	0.57	+0.2
3,011,003	+		LRK53_RS13650	0.57	-0.3
3,011,003	+		LRK53_RS13650	0.57	-0.9
3,011,003	+		LRK53_RS13650	0.57	-1.2
3,011,003	+		LRK53_RS13650	0.57	-1.2
3,011,004	-		LRK53_RS13650	0.57	-0.4
3,011,004	-		LRK53_RS13650	0.57	-0.7
3,011,004	-		LRK53_RS13650	0.57	-0.3
3,011,004	-		LRK53_RS13650	0.57	-0.1
3,011,004	-		LRK53_RS13650	0.57	+0.0
3,011,004	-		LRK53_RS13650	0.57	+0.2
3,011,004	-		LRK53_RS13650	0.57	+0.2
3,011,004	-		LRK53_RS13650	0.57	+1.2
3,011,004	-		LRK53_RS13650	0.57	-0.8
3,011,004	-		LRK53_RS13650	0.57	-1.3
3,011,004	-		LRK53_RS13650	0.57	-0.8
3,011,004	-		LRK53_RS13650	0.57	+0.2
3,011,004	-		LRK53_RS13650	0.57	+0.8
3,011,004	-		LRK53_RS13650	0.57	-0.6
3,011,004	-		LRK53_RS13650	0.57	-0.8
3,011,021	+		LRK53_RS13650	0.58	-0.8
3,011,021	+		LRK53_RS13650	0.58	+1.2
3,011,021	+		LRK53_RS13650	0.58	-1.4
3,011,021	+		LRK53_RS13650	0.58	-0.3
3,011,021	+		LRK53_RS13650	0.58	-0.1
3,011,075	+		LRK53_RS13650	0.61	-0.7
3,011,075	+		LRK53_RS13650	0.61	-0.9
3,011,075	+		LRK53_RS13650	0.61	+0.3
3,011,075	+		LRK53_RS13650	0.61	+1.7
3,011,075	+		LRK53_RS13650	0.61	+0.7
3,011,075	+		LRK53_RS13650	0.61	-1.2
3,011,076	-		LRK53_RS13650	0.61	-0.8
3,011,076	-		LRK53_RS13650	0.61	+0.7
3,011,076	-		LRK53_RS13650	0.61	-0.0
3,011,076	-		LRK53_RS13650	0.61	-1.4
3,011,076	-		LRK53_RS13650	0.61	+0.3
3,011,150	+		LRK53_RS13650	0.66	+1.2
3,011,150	+		LRK53_RS13650	0.66	-0.2
3,011,150	+		LRK53_RS13650	0.66	-1.6
3,011,151	-		LRK53_RS13650	0.66	+0.2
3,011,151	-		LRK53_RS13650	0.66	-1.2
3,011,151	-		LRK53_RS13650	0.66	-0.2
3,011,151	-		LRK53_RS13650	0.66	-0.2
3,011,151	-		LRK53_RS13650	0.66	-1.1
3,011,151	-		LRK53_RS13650	0.66	+0.0
3,011,151	-		LRK53_RS13650	0.66	+0.5
3,011,151	-		LRK53_RS13650	0.66	-0.5
3,011,151	-		LRK53_RS13650	0.66	-0.3
3,011,151	-		LRK53_RS13650	0.66	-0.4
3,011,151	-		LRK53_RS13650	0.66	+0.2
3,011,182	-		LRK53_RS13650	0.68	-1.0
3,011,195	+		LRK53_RS13650	0.68	+0.0
3,011,195	+		LRK53_RS13650	0.68	-1.4
3,011,195	+		LRK53_RS13650	0.68	+0.2
3,011,195	+		LRK53_RS13650	0.68	-0.1
3,011,195	+		LRK53_RS13650	0.68	+0.6
3,011,195	+		LRK53_RS13650	0.68	+0.4
3,011,195	+		LRK53_RS13650	0.68	+2.0
3,011,195	+		LRK53_RS13650	0.68	-0.1
3,011,195	+		LRK53_RS13650	0.68	+1.2
3,011,196	-		LRK53_RS13650	0.69	-0.6
3,011,196	-		LRK53_RS13650	0.69	-0.6
3,011,196	-		LRK53_RS13650	0.69	+0.6
3,011,196	-		LRK53_RS13650	0.69	+2.5
3,011,196	-		LRK53_RS13650	0.69	-0.8
3,011,196	-		LRK53_RS13650	0.69	-0.8
3,011,196	-		LRK53_RS13650	0.69	-0.1
3,011,196	-		LRK53_RS13650	0.69	-0.7
3,011,420	+		LRK53_RS13650	0.82	+0.2
3,011,420	+		LRK53_RS13650	0.82	-0.2
3,011,420	+		LRK53_RS13650	0.82	-0.3
3,011,420	+		LRK53_RS13650	0.82	+0.8
3,011,421	-		LRK53_RS13650	0.82	+1.3
3,011,421	-		LRK53_RS13650	0.82	-1.4
3,011,421	-		LRK53_RS13650	0.82	-1.2
3,011,421	-		LRK53_RS13650	0.82	-1.8
3,011,450	+		LRK53_RS13650	0.84	-2.0
3,011,450	+		LRK53_RS13650	0.84	+0.2
3,011,450	+		LRK53_RS13650	0.84	-0.3
3,011,450	+		LRK53_RS13650	0.84	-1.0
3,011,450	+		LRK53_RS13650	0.84	-1.0
3,011,450	+		LRK53_RS13650	0.84	-0.6
3,011,451	-		LRK53_RS13650	0.84	+0.5
3,011,451	-		LRK53_RS13650	0.84	-0.6
3,011,451	-		LRK53_RS13650	0.84	-0.8
3,011,451	-		LRK53_RS13650	0.84	+0.0
3,011,451	-		LRK53_RS13650	0.84	+0.2
3,011,451	-		LRK53_RS13650	0.84	-0.4
3,011,570	+				-1.0
3,011,571	-				+1.2
3,011,571	-				+0.4
3,011,571	-				+0.2
3,011,571	-				+0.2
3,011,571	-				+0.6
3,011,615	+				-0.5
3,011,615	+				-0.4
3,011,615	+				-2.7
3,011,616	-				+2.2
3,011,654	+				+0.2
3,011,654	+				-0.8
3,011,654	+				+1.2
3,011,654	+				+0.1
3,011,654	+				+0.6
3,011,655	-				+0.0
3,011,655	-				+0.2
3,011,655	-				-0.4
3,011,655	-				-0.8
3,011,802	+				+0.0
3,011,802	+				-1.3
3,011,802	+				-0.6
3,011,802	+				+2.4
3,011,803	-				+0.3
3,011,803	-				+3.3
3,011,804	+				+0.6
3,011,804	+				-0.2
3,011,804	+				-1.2
3,011,804	+				-0.7
3,011,804	+				-1.2
3,011,804	+				+1.0
3,011,804	+				-1.3
3,011,804	+				-0.5
3,011,804	+				-0.4
3,011,804	+				+0.2
3,011,804	+				-0.5
3,011,804	+				+0.4
3,011,805	-				-2.8
3,011,805	-				+0.3
3,011,805	-				+0.2
3,011,805	-				+0.4
3,011,805	-				-0.2
3,011,805	-				-2.8
3,011,835	-				+1.2
3,012,023	+		LRK53_RS13655	0.67	-2.2
3,012,024	-		LRK53_RS13655	0.68	-1.7
3,012,024	-		LRK53_RS13655	0.68	+1.7
3,012,024	-		LRK53_RS13655	0.68	-0.4
3,012,024	-		LRK53_RS13655	0.68	-0.0
3,012,180	+				-2.4
3,012,180	+				-1.4
3,012,180	+				-0.4
3,012,180	+				-0.8
3,012,180	+				-1.0
3,012,180	+				-1.2
3,012,180	+				-2.0
3,012,180	+				-2.4
3,012,180	+				-2.8
3,012,180	+				+0.1
3,012,180	+				+0.4
3,012,180	+				-1.7
3,012,181	-				-0.7
3,012,181	-				-0.4
3,012,181	-				-1.0
3,012,181	-				-0.8
3,012,181	-				-0.6
3,012,181	-				-1.9
3,012,181	-				+0.0
3,012,181	-				-0.5
3,012,181	-				-0.2
3,012,181	-				+3.2
3,012,181	-				-0.5
3,012,185	+				-0.8
3,012,185	+				-1.5
3,012,185	+				-0.7
3,012,185	+				-0.4
3,012,186	-				+0.2
3,012,193	+				-0.7
3,012,194	-				-0.6
3,012,194	-				+2.7
3,012,289	+				-1.4
3,012,289	+				-0.5
3,012,289	+				-1.3
3,012,289	+				+1.2
3,012,289	+				+1.2
3,012,289	+				-0.5
3,012,289	+				+0.2
3,012,289	+				-0.4
3,012,289	+				+0.8
3,012,289	+				+0.6
3,012,289	+				+0.2
3,012,290	-				+2.7
3,012,290	-				+1.6
3,012,290	-				+0.0
3,012,290	-				-0.4
3,012,290	-				-2.3
3,012,290	-				-0.3
3,012,290	-				-2.3
3,012,290	-				-0.2
3,012,290	-				+1.2
3,012,429	+		LRK53_RS13660	0.12	+0.5
3,012,622	-		LRK53_RS13660	0.30	-0.7
3,012,622	-		LRK53_RS13660	0.30	+0.0
3,012,622	-		LRK53_RS13660	0.30	-0.1
3,012,622	-		LRK53_RS13660	0.30	+1.4
3,012,630	+		LRK53_RS13660	0.31	-0.3
3,012,630	+		LRK53_RS13660	0.31	+1.5
3,012,630	+		LRK53_RS13660	0.31	-0.8
3,012,630	+		LRK53_RS13660	0.31	-0.8
3,012,630	+		LRK53_RS13660	0.31	-1.7
3,012,630	+		LRK53_RS13660	0.31	+0.6
3,012,630	+		LRK53_RS13660	0.31	-0.8
3,012,630	+		LRK53_RS13660	0.31	-0.4
3,012,630	+		LRK53_RS13660	0.31	-0.2
3,012,630	+		LRK53_RS13660	0.31	-1.9
3,012,630	+		LRK53_RS13660	0.31	-2.4
3,012,630	+		LRK53_RS13660	0.31	+0.4
3,012,630	+		LRK53_RS13660	0.31	-0.6
3,012,631	-		LRK53_RS13660	0.31	-1.2
3,012,631	-		LRK53_RS13660	0.31	+1.0
3,012,631	-		LRK53_RS13660	0.31	+1.2
3,012,631	-		LRK53_RS13660	0.31	-3.1
3,012,631	-		LRK53_RS13660	0.31	-1.7
3,012,631	-		LRK53_RS13660	0.31	+0.6
3,012,631	-		LRK53_RS13660	0.31	-1.0
3,012,723	-		LRK53_RS13660	0.40	-2.7