Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10360

Experiment: NLDM_defined; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined; midlog
2,320,423	+		LRK53_RS10355	0.78	+0.1
2,320,423	+		LRK53_RS10355	0.78	-0.2
2,320,424	-		LRK53_RS10355	0.78	-0.2
2,320,681	-		LRK53_RS10355	0.86	-2.0
2,321,218	+				+0.3
2,321,218	+				+0.3
2,321,218	+				-1.4
2,321,218	+				+0.4
2,321,218	+				+1.4
2,321,218	+				-1.2
2,321,218	+				+0.1
2,321,218	+				-1.4
2,321,218	+				+0.8
2,321,219	-				-1.2
2,321,219	-				+0.8
2,321,219	-				-0.4
2,321,219	-				-1.4
2,321,219	-				-1.2
2,321,219	-				-2.0
2,321,219	-				+0.6
2,321,219	-				+1.1
2,321,219	-				-0.7
2,321,219	-				-1.3
2,321,219	-				-0.7
2,321,219	-				-1.7
2,321,219	-				+1.1
2,321,219	-				-2.4
2,321,219	-				+0.8
2,321,219	-				-0.6
2,321,219	-				-1.0
2,321,219	-				+0.1
2,321,219	-				+1.1
2,321,219	-				+0.1
2,321,219	-				-0.0
2,321,260	+				-1.0
2,321,260	+				-0.3
2,321,282	+				+1.1
2,321,283	-				-0.9
2,321,495	-		LRK53_RS10360	0.20	+0.2
2,321,749	+		LRK53_RS10360	0.49	-0.4
2,321,750	-		LRK53_RS10360	0.49	+0.1
2,321,750	-		LRK53_RS10360	0.49	+1.1
2,321,750	-		LRK53_RS10360	0.49	-0.2
2,321,790	-		LRK53_RS10360	0.53	-0.9
2,321,790	-		LRK53_RS10360	0.53	+1.1
2,321,790	-		LRK53_RS10360	0.53	-3.3
2,321,790	-		LRK53_RS10360	0.53	-1.2
2,322,007	+		LRK53_RS10360	0.77	-0.7
2,322,007	+		LRK53_RS10360	0.77	-1.1
2,322,007	+		LRK53_RS10360	0.77	+1.5
2,322,007	+		LRK53_RS10360	0.77	-0.1
2,322,007	+		LRK53_RS10360	0.77	+0.0
2,322,008	-		LRK53_RS10360	0.77	-0.9
2,322,008	-		LRK53_RS10360	0.77	+0.3
2,322,008	-		LRK53_RS10360	0.77	-1.7
2,322,008	-		LRK53_RS10360	0.77	-1.0
2,322,008	-		LRK53_RS10360	0.77	-1.3
2,322,070	+		LRK53_RS10360	0.84	-0.5
2,322,082	+		LRK53_RS10360	0.86	-2.0
2,322,082	+		LRK53_RS10360	0.86	-1.2
2,322,082	+		LRK53_RS10360	0.86	+1.1
2,322,082	+		LRK53_RS10360	0.86	-1.2
2,322,083	-		LRK53_RS10360	0.86	+0.9
2,322,083	-		LRK53_RS10360	0.86	-0.1
2,322,083	-		LRK53_RS10360	0.86	+0.3
2,322,175	+				-2.0
2,322,175	+				+1.5
2,322,176	-				-0.4
2,322,176	-				-1.2
2,322,176	-				+0.1
2,322,176	-				-2.3
2,322,176	-				+0.0
2,322,176	-				+1.6
2,322,215	+				-2.2
2,322,215	+				+1.1
2,322,215	+				-0.1
2,322,215	+				+0.1
2,322,215	+				-0.9
2,322,215	+				-0.4
2,322,215	+				+0.3
2,322,215	+				-1.5
2,322,215	+				-0.7
2,322,215	+				-0.4
2,322,215	+				-1.9
2,322,215	+				+0.2
2,322,215	+				-0.2
2,322,215	+				-0.5
2,322,216	-				+0.1
2,322,216	-				-1.7
2,322,216	-				-1.9
2,322,216	-				+0.6
2,322,216	-				-1.2
2,322,216	-				-0.4
2,322,216	-				-1.4
2,322,216	-				-0.9
2,322,216	-				-1.0
2,322,216	-				+2.7
2,322,216	-				-0.7
2,322,216	-				+0.1
2,322,216	-				-1.6
2,322,226	+				-0.3
2,322,227	-				-0.6
2,322,227	-				-0.4
2,322,335	+				-0.1
2,322,335	+				-0.2
2,322,336	-				+1.1
2,322,336	-				-0.6
2,322,336	-				-0.4
2,322,364	+				-0.8
2,322,364	+				-1.6
2,322,364	+				+0.1
2,322,364	+				-0.1
2,322,364	+				-1.1
2,322,364	+				-0.6
2,322,364	+				-0.9
2,322,364	+				-0.4
2,322,364	+				-0.2
2,322,364	+				+1.1
2,322,364	+				+0.6
2,322,364	+				-1.9
2,322,364	+				-1.7
2,322,364	+				+0.3
2,322,364	+				-0.4
2,322,364	+				-2.6
2,322,365	-				-0.2
2,322,365	-				+0.1
2,322,365	-				-1.9
2,322,365	-				+0.1
2,322,365	-				-1.2
2,322,365	-				-0.5
2,322,365	-				-2.2
2,322,365	-				-0.6
2,322,365	-				-0.7
2,322,365	-				+1.1
2,322,365	-				-0.2
2,322,365	-				+0.1
2,322,365	-				-1.7
2,322,366	+				-0.2
2,322,366	+				-1.9
2,322,366	+				+2.1
2,322,366	+				-2.2
2,322,366	+				-0.3
2,322,366	+				-0.2
2,322,366	+				-0.8
2,322,366	+				+0.1
2,322,366	+				+0.6
2,322,366	+				-0.4
2,322,366	+				-0.4
2,322,366	+				-2.0
2,322,366	+				-0.1
2,322,367	-				-1.4
2,322,367	-				-0.7
2,322,367	-				-0.1
2,322,367	-				-0.6
2,322,367	-				+0.4
2,322,367	-				-0.9
2,322,367	-				+1.1
2,322,367	-				-1.0
2,322,367	-				-0.6
2,322,367	-				+1.1
2,322,367	-				-1.1
2,322,367	-				-0.0
2,322,377	+				+0.1
2,322,377	+				-1.0
2,322,377	+				-0.7
2,322,378	-				-0.4
2,322,378	-				+1.7
2,322,488	+				+0.1
2,322,489	-				-0.6
2,322,586	+		LRK53_RS10365	0.19	-0.6
2,322,586	+		LRK53_RS10365	0.19	-1.4
2,322,586	+		LRK53_RS10365	0.19	+0.1
2,322,586	+		LRK53_RS10365	0.19	-1.4
2,322,586	+		LRK53_RS10365	0.19	-1.0
2,322,586	+		LRK53_RS10365	0.19	-1.6
2,322,587	-		LRK53_RS10365	0.19	+0.0
2,322,587	-		LRK53_RS10365	0.19	+0.1
2,322,587	-		LRK53_RS10365	0.19	+0.1
2,322,587	-		LRK53_RS10365	0.19	-0.5
2,322,721	-		LRK53_RS10365	0.30	-1.7
2,322,769	+		LRK53_RS10365	0.35	-0.9
2,322,770	-		LRK53_RS10365	0.35	-1.9
2,322,770	-		LRK53_RS10365	0.35	+1.1
2,322,770	-		LRK53_RS10365	0.35	-0.1
2,322,839	+		LRK53_RS10365	0.41	-0.3
2,322,840	-		LRK53_RS10365	0.41	+0.1
2,322,840	-		LRK53_RS10365	0.41	+0.1
2,322,840	-		LRK53_RS10365	0.41	-0.7
2,322,840	-		LRK53_RS10365	0.41	-0.1
2,322,840	-		LRK53_RS10365	0.41	+0.4
2,322,840	-		LRK53_RS10365	0.41	+0.1
2,322,934	+		LRK53_RS10365	0.49	-2.2
2,322,934	+		LRK53_RS10365	0.49	-0.9
2,322,934	+		LRK53_RS10365	0.49	-0.7
2,322,935	-		LRK53_RS10365	0.49	-1.2
2,322,935	-		LRK53_RS10365	0.49	+1.7
2,322,935	-		LRK53_RS10365	0.49	-0.7
2,322,935	-		LRK53_RS10365	0.49	+1.7