Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08980

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08970 and LRK53_RS08975 are separated by 3 nucleotidesLRK53_RS08975 and LRK53_RS08980 are separated by 9 nucleotidesLRK53_RS08980 and LRK53_RS08985 overlap by 4 nucleotidesLRK53_RS08985 and LRK53_RS08990 are separated by 4 nucleotides LRK53_RS08970: LRK53_RS08970 - NADH-quinone oxidoreductase subunit NuoH, at 2,007,675 to 2,008,727 _RS08970 LRK53_RS08975: LRK53_RS08975 - NADH-quinone oxidoreductase subunit NuoI, at 2,008,731 to 2,009,222 _RS08975 LRK53_RS08980: LRK53_RS08980 - NADH-quinone oxidoreductase subunit J, at 2,009,232 to 2,009,885 _RS08980 LRK53_RS08985: LRK53_RS08985 - NADH-quinone oxidoreductase subunit NuoK, at 2,009,882 to 2,010,187 _RS08985 LRK53_RS08990: LRK53_RS08990 - NADH-quinone oxidoreductase subunit L, at 2,010,192 to 2,012,279 _RS08990 Position (kb) 2009 2010Strain fitness (log2 ratio) -1 0 1at 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.725 kb on + strandat 2008.725 kb on + strandat 2008.725 kb on + strandat 2009.763 kb on + strand, within LRK53_RS08980at 2009.808 kb on + strand, within LRK53_RS08980at 2009.809 kb on + strand, within LRK53_RS08980at 2009.809 kb on + strand, within LRK53_RS08980

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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2,008,692 + -0.3
2,008,692 + -1.0
2,008,692 + -1.0
2,008,692 + +0.8
2,008,692 + -0.6
2,008,692 + -1.6
2,008,692 + +1.2
2,008,692 + -1.0
2,008,692 + +0.3
2,008,692 + -0.5
2,008,695 + -0.3
2,008,695 + -0.3
2,008,695 + -0.1
2,008,695 + -0.7
2,008,695 + -0.6
2,008,725 + -1.6
2,008,725 + +0.5
2,008,725 + -1.6
2,009,763 + LRK53_RS08980 0.81 -1.2
2,009,808 + LRK53_RS08980 0.88 -0.8
2,009,809 + LRK53_RS08980 0.88 -0.2
2,009,809 + LRK53_RS08980 0.88 -0.8

Or see this region's nucleotide sequence