Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08970 and LRK53_RS08975 are separated by 3 nucleotides LRK53_RS08975 and LRK53_RS08980 are separated by 9 nucleotides LRK53_RS08980 and LRK53_RS08985 overlap by 4 nucleotides LRK53_RS08985 and LRK53_RS08990 are separated by 4 nucleotides
LRK53_RS08970: LRK53_RS08970 - NADH-quinone oxidoreductase subunit NuoH, at 2,007,675 to 2,008,727
_RS08970
LRK53_RS08975: LRK53_RS08975 - NADH-quinone oxidoreductase subunit NuoI, at 2,008,731 to 2,009,222
_RS08975
LRK53_RS08980: LRK53_RS08980 - NADH-quinone oxidoreductase subunit J, at 2,009,232 to 2,009,885
_RS08980
LRK53_RS08985: LRK53_RS08985 - NADH-quinone oxidoreductase subunit NuoK, at 2,009,882 to 2,010,187
_RS08985
LRK53_RS08990: LRK53_RS08990 - NADH-quinone oxidoreductase subunit L, at 2,010,192 to 2,012,279
_RS08990
Position (kb)
2009
2010 Strain fitness (log2 ratio)
-1
0
1 at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.725 kb on + strand at 2008.725 kb on + strand at 2008.725 kb on + strand at 2009.763 kb on + strand, within LRK53_RS08980 at 2009.808 kb on + strand, within LRK53_RS08980 at 2009.809 kb on + strand, within LRK53_RS08980 at 2009.809 kb on + strand, within LRK53_RS08980
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 2,008,692 + -0.3 2,008,692 + -1.0 2,008,692 + -1.0 2,008,692 + +0.8 2,008,692 + -0.6 2,008,692 + -1.6 2,008,692 + +1.2 2,008,692 + -1.0 2,008,692 + +0.3 2,008,692 + -0.5 2,008,695 + -0.3 2,008,695 + -0.3 2,008,695 + -0.1 2,008,695 + -0.7 2,008,695 + -0.6 2,008,725 + -1.6 2,008,725 + +0.5 2,008,725 + -1.6 2,009,763 + LRK53_RS08980 0.81 -1.2 2,009,808 + LRK53_RS08980 0.88 -0.8 2,009,809 + LRK53_RS08980 0.88 -0.2 2,009,809 + LRK53_RS08980 0.88 -0.8
Or see this region's nucleotide sequence