Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08480 and LRK53_RS08485 are separated by 157 nucleotides LRK53_RS08485 and LRK53_RS08490 are separated by 83 nucleotides LRK53_RS08490 and LRK53_RS08495 are separated by 6 nucleotides
LRK53_RS08480: LRK53_RS08480 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,904,895 to 1,905,626
_RS08480
LRK53_RS08485: LRK53_RS08485 - imidazole glycerol phosphate synthase subunit HisF, at 1,905,784 to 1,906,560
_RS08485
LRK53_RS08490: LRK53_RS08490 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,906,644 to 1,907,270
_RS08490
LRK53_RS08495: LRK53_RS08495 - caspase family protein, at 1,907,277 to 1,908,281
_RS08495
Position (kb) 1905
1906
1907 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1904.822 kb on + strand at 1904.822 kb on + strand at 1904.822 kb on + strand at 1904.822 kb on + strand at 1904.823 kb on - strand at 1904.823 kb on - strand at 1904.823 kb on - strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.901 kb on + strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.902 kb on - strand at 1904.911 kb on + strand at 1904.911 kb on + strand at 1904.911 kb on + strand at 1904.911 kb on + strand at 1904.967 kb on + strand at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.985 kb on + strand, within LRK53_RS08480 at 1904.986 kb on - strand, within LRK53_RS08480 at 1904.986 kb on - strand, within LRK53_RS08480 at 1904.986 kb on - strand, within LRK53_RS08480 at 1905.018 kb on + strand, within LRK53_RS08480 at 1905.018 kb on + strand, within LRK53_RS08480 at 1905.019 kb on - strand, within LRK53_RS08480 at 1905.148 kb on + strand, within LRK53_RS08480 at 1905.258 kb on + strand, within LRK53_RS08480 at 1905.258 kb on + strand, within LRK53_RS08480 at 1905.259 kb on - strand, within LRK53_RS08480 at 1905.259 kb on - strand, within LRK53_RS08480 at 1905.378 kb on + strand, within LRK53_RS08480 at 1905.379 kb on - strand, within LRK53_RS08480 at 1905.622 kb on + strand at 1905.622 kb on + strand at 1905.623 kb on - strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.845 kb on + strand at 1905.846 kb on - strand at 1905.846 kb on - strand at 1905.931 kb on + strand, within LRK53_RS08485 at 1905.931 kb on + strand, within LRK53_RS08485 at 1905.932 kb on - strand, within LRK53_RS08485 at 1905.932 kb on - strand, within LRK53_RS08485 at 1905.932 kb on - strand, within LRK53_RS08485 at 1906.213 kb on + strand, within LRK53_RS08485 at 1906.213 kb on + strand, within LRK53_RS08485 at 1906.214 kb on - strand, within LRK53_RS08485 at 1906.214 kb on - strand, within LRK53_RS08485 at 1906.214 kb on - strand, within LRK53_RS08485 at 1906.214 kb on - strand, within LRK53_RS08485 at 1906.502 kb on + strand at 1906.502 kb on + strand at 1906.519 kb on + strand at 1906.519 kb on + strand at 1906.519 kb on + strand at 1906.520 kb on - strand at 1906.520 kb on - strand at 1906.520 kb on - strand at 1906.520 kb on - strand at 1906.520 kb on - strand at 1906.520 kb on - strand at 1906.545 kb on - strand at 1906.551 kb on + strand at 1906.551 kb on + strand at 1906.551 kb on + strand at 1906.552 kb on - strand at 1906.552 kb on - strand at 1906.552 kb on - strand at 1906.552 kb on - strand at 1906.552 kb on - strand at 1906.552 kb on - strand at 1906.559 kb on - strand at 1906.559 kb on - strand at 1906.559 kb on - strand at 1906.752 kb on + strand, within LRK53_RS08490 at 1906.753 kb on - strand, within LRK53_RS08490 at 1906.753 kb on - strand, within LRK53_RS08490 at 1906.753 kb on - strand, within LRK53_RS08490 at 1906.753 kb on - strand, within LRK53_RS08490 at 1906.806 kb on + strand, within LRK53_RS08490 at 1906.806 kb on + strand, within LRK53_RS08490 at 1906.806 kb on + strand, within LRK53_RS08490 at 1906.806 kb on + strand, within LRK53_RS08490 at 1906.806 kb on + strand, within LRK53_RS08490 at 1906.806 kb on + strand, within LRK53_RS08490 at 1906.806 kb on + strand, within LRK53_RS08490 at 1906.807 kb on - strand, within LRK53_RS08490 at 1906.807 kb on - strand, within LRK53_RS08490 at 1907.049 kb on + strand, within LRK53_RS08490 at 1907.049 kb on + strand, within LRK53_RS08490 at 1907.049 kb on + strand, within LRK53_RS08490 at 1907.050 kb on - strand, within LRK53_RS08490 at 1907.050 kb on - strand, within LRK53_RS08490 at 1907.050 kb on - strand, within LRK53_RS08490 at 1907.050 kb on - strand, within LRK53_RS08490 at 1907.050 kb on - strand, within LRK53_RS08490 at 1907.050 kb on - strand, within LRK53_RS08490 at 1907.050 kb on - strand, within LRK53_RS08490 at 1907.279 kb on - strand at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.527 kb on + strand, within LRK53_RS08495 at 1907.528 kb on - strand, within LRK53_RS08495 at 1907.528 kb on - strand, within LRK53_RS08495 at 1907.528 kb on - strand, within LRK53_RS08495 at 1907.528 kb on - strand, within LRK53_RS08495
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 1,904,822 + -0.7 1,904,822 + -0.0 1,904,822 + +1.3 1,904,822 + +1.3 1,904,823 - -0.6 1,904,823 - -1.7 1,904,823 - +2.6 1,904,901 + +0.9 1,904,901 + +1.2 1,904,901 + -1.5 1,904,901 + -1.0 1,904,901 + +0.6 1,904,901 + -0.6 1,904,902 - +0.4 1,904,902 - -1.1 1,904,902 - -0.7 1,904,902 - +1.5 1,904,902 - -1.2 1,904,911 + -0.5 1,904,911 + -1.0 1,904,911 + -1.2 1,904,911 + -0.5 1,904,967 + -1.4 1,904,985 + LRK53_RS08480 0.12 -0.4 1,904,985 + LRK53_RS08480 0.12 -1.0 1,904,985 + LRK53_RS08480 0.12 +1.3 1,904,985 + LRK53_RS08480 0.12 -1.3 1,904,986 - LRK53_RS08480 0.12 -0.4 1,904,986 - LRK53_RS08480 0.12 +0.2 1,904,986 - LRK53_RS08480 0.12 -1.0 1,905,018 + LRK53_RS08480 0.17 -0.7 1,905,018 + LRK53_RS08480 0.17 -0.1 1,905,019 - LRK53_RS08480 0.17 -0.5 1,905,148 + LRK53_RS08480 0.35 +0.5 1,905,258 + LRK53_RS08480 0.50 +2.4 1,905,258 + LRK53_RS08480 0.50 +0.3 1,905,259 - LRK53_RS08480 0.50 +0.3 1,905,259 - LRK53_RS08480 0.50 -0.3 1,905,378 + LRK53_RS08480 0.66 +1.0 1,905,379 - LRK53_RS08480 0.66 -1.9 1,905,622 + -2.2 1,905,622 + -0.4 1,905,623 - -1.0 1,905,845 + -1.2 1,905,845 + -0.1 1,905,845 + +1.3 1,905,845 + +0.3 1,905,845 + +0.5 1,905,845 + +0.1 1,905,845 + +0.6 1,905,845 + +1.9 1,905,845 + -0.7 1,905,845 + +0.8 1,905,845 + +2.3 1,905,845 + -0.5 1,905,846 - -2.2 1,905,846 - -0.7 1,905,931 + LRK53_RS08485 0.19 -2.7 1,905,931 + LRK53_RS08485 0.19 -2.0 1,905,932 - LRK53_RS08485 0.19 -1.0 1,905,932 - LRK53_RS08485 0.19 -0.3 1,905,932 - LRK53_RS08485 0.19 -1.2 1,906,213 + LRK53_RS08485 0.55 -0.1 1,906,213 + LRK53_RS08485 0.55 +1.1 1,906,214 - LRK53_RS08485 0.55 -2.3 1,906,214 - LRK53_RS08485 0.55 -0.6 1,906,214 - LRK53_RS08485 0.55 -0.0 1,906,214 - LRK53_RS08485 0.55 -0.4 1,906,502 + -0.2 1,906,502 + -2.3 1,906,519 + +0.3 1,906,519 + +0.3 1,906,519 + +0.3 1,906,520 - +1.0 1,906,520 - -1.0 1,906,520 - +0.5 1,906,520 - -0.4 1,906,520 - -0.6 1,906,520 - -1.0 1,906,545 - -0.3 1,906,551 + -0.5 1,906,551 + -0.2 1,906,551 + +4.3 1,906,552 - -0.1 1,906,552 - +0.4 1,906,552 - -0.6 1,906,552 - -1.8 1,906,552 - +1.3 1,906,552 - -0.8 1,906,559 - -0.1 1,906,559 - +0.5 1,906,559 - -0.6 1,906,752 + LRK53_RS08490 0.17 -1.3 1,906,753 - LRK53_RS08490 0.17 -0.7 1,906,753 - LRK53_RS08490 0.17 -1.0 1,906,753 - LRK53_RS08490 0.17 +2.3 1,906,753 - LRK53_RS08490 0.17 -1.6 1,906,806 + LRK53_RS08490 0.26 +1.3 1,906,806 + LRK53_RS08490 0.26 +1.0 1,906,806 + LRK53_RS08490 0.26 +1.3 1,906,806 + LRK53_RS08490 0.26 -0.2 1,906,806 + LRK53_RS08490 0.26 -0.4 1,906,806 + LRK53_RS08490 0.26 +0.3 1,906,806 + LRK53_RS08490 0.26 +0.2 1,906,807 - LRK53_RS08490 0.26 -0.3 1,906,807 - LRK53_RS08490 0.26 +0.3 1,907,049 + LRK53_RS08490 0.65 +0.1 1,907,049 + LRK53_RS08490 0.65 +0.8 1,907,049 + LRK53_RS08490 0.65 -0.2 1,907,050 - LRK53_RS08490 0.65 +1.3 1,907,050 - LRK53_RS08490 0.65 +1.1 1,907,050 - LRK53_RS08490 0.65 -0.5 1,907,050 - LRK53_RS08490 0.65 +1.3 1,907,050 - LRK53_RS08490 0.65 +0.3 1,907,050 - LRK53_RS08490 0.65 +0.7 1,907,050 - LRK53_RS08490 0.65 -0.4 1,907,279 - -0.0 1,907,527 + LRK53_RS08495 0.25 +0.1 1,907,527 + LRK53_RS08495 0.25 -1.8 1,907,527 + LRK53_RS08495 0.25 -0.7 1,907,527 + LRK53_RS08495 0.25 -0.0 1,907,527 + LRK53_RS08495 0.25 +1.3 1,907,527 + LRK53_RS08495 0.25 -0.7 1,907,527 + LRK53_RS08495 0.25 -1.9 1,907,527 + LRK53_RS08495 0.25 -0.8 1,907,527 + LRK53_RS08495 0.25 +1.3 1,907,528 - LRK53_RS08495 0.25 -0.3 1,907,528 - LRK53_RS08495 0.25 -0.6 1,907,528 - LRK53_RS08495 0.25 -1.5 1,907,528 - LRK53_RS08495 0.25 +0.3
Or see this region's nucleotide sequence