Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08425 and LRK53_RS08430 are separated by 68 nucleotides LRK53_RS08430 and LRK53_RS08435 are separated by 452 nucleotides LRK53_RS08435 and LRK53_RS08440 are separated by 10 nucleotides
LRK53_RS08425: LRK53_RS08425 - cation diffusion facilitator family transporter, at 1,893,287 to 1,894,231
_RS08425
LRK53_RS08430: LRK53_RS08430 - 30S ribosomal protein THX, at 1,894,300 to 1,894,461
_RS08430
LRK53_RS08435: LRK53_RS08435 - glutaredoxin, at 1,894,914 to 1,895,159
_RS08435
LRK53_RS08440: LRK53_RS08440 - ribonucleotide-diphosphate reductase subunit beta, at 1,895,170 to 1,896,267
_RS08440
Position (kb)
1894
1895 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1893.387 kb on + strand, within LRK53_RS08425 at 1893.548 kb on + strand, within LRK53_RS08425 at 1893.548 kb on + strand, within LRK53_RS08425 at 1893.549 kb on - strand, within LRK53_RS08425 at 1893.549 kb on - strand, within LRK53_RS08425 at 1893.549 kb on - strand, within LRK53_RS08425 at 1893.549 kb on - strand, within LRK53_RS08425 at 1893.549 kb on - strand, within LRK53_RS08425 at 1893.549 kb on - strand, within LRK53_RS08425 at 1893.549 kb on - strand, within LRK53_RS08425 at 1893.554 kb on + strand, within LRK53_RS08425 at 1893.626 kb on + strand, within LRK53_RS08425 at 1893.626 kb on + strand, within LRK53_RS08425 at 1893.727 kb on + strand, within LRK53_RS08425 at 1893.728 kb on - strand, within LRK53_RS08425 at 1894.234 kb on - strand at 1894.258 kb on + strand at 1894.258 kb on + strand at 1894.259 kb on - strand at 1894.340 kb on - strand, within LRK53_RS08430 at 1894.352 kb on - strand, within LRK53_RS08430 at 1894.629 kb on + strand at 1894.630 kb on - strand at 1895.143 kb on + strand at 1895.144 kb on - strand at 1895.144 kb on - strand at 1895.144 kb on - strand at 1895.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 1,893,387 + LRK53_RS08425 0.11 -0.5 1,893,548 + LRK53_RS08425 0.28 -0.9 1,893,548 + LRK53_RS08425 0.28 -0.6 1,893,549 - LRK53_RS08425 0.28 -0.9 1,893,549 - LRK53_RS08425 0.28 -0.1 1,893,549 - LRK53_RS08425 0.28 +2.3 1,893,549 - LRK53_RS08425 0.28 +2.9 1,893,549 - LRK53_RS08425 0.28 +0.9 1,893,549 - LRK53_RS08425 0.28 +0.3 1,893,549 - LRK53_RS08425 0.28 -0.3 1,893,554 + LRK53_RS08425 0.28 +1.0 1,893,626 + LRK53_RS08425 0.36 +0.7 1,893,626 + LRK53_RS08425 0.36 -0.7 1,893,727 + LRK53_RS08425 0.47 +1.8 1,893,728 - LRK53_RS08425 0.47 +1.3 1,894,234 - +0.2 1,894,258 + -1.3 1,894,258 + +0.3 1,894,259 - +0.3 1,894,340 - LRK53_RS08430 0.25 -2.5 1,894,352 - LRK53_RS08430 0.32 -2.3 1,894,629 + -0.6 1,894,630 - -0.4 1,895,143 + +0.4 1,895,144 - +2.3 1,895,144 - +1.7 1,895,144 - -2.7 1,895,144 - +1.8
Or see this region's nucleotide sequence