Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08430

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08425 and LRK53_RS08430 are separated by 68 nucleotidesLRK53_RS08430 and LRK53_RS08435 are separated by 452 nucleotidesLRK53_RS08435 and LRK53_RS08440 are separated by 10 nucleotides LRK53_RS08425: LRK53_RS08425 - cation diffusion facilitator family transporter, at 1,893,287 to 1,894,231 _RS08425 LRK53_RS08430: LRK53_RS08430 - 30S ribosomal protein THX, at 1,894,300 to 1,894,461 _RS08430 LRK53_RS08435: LRK53_RS08435 - glutaredoxin, at 1,894,914 to 1,895,159 _RS08435 LRK53_RS08440: LRK53_RS08440 - ribonucleotide-diphosphate reductase subunit beta, at 1,895,170 to 1,896,267 _RS08440 Position (kb) 1894 1895Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1893.387 kb on + strand, within LRK53_RS08425at 1893.548 kb on + strand, within LRK53_RS08425at 1893.548 kb on + strand, within LRK53_RS08425at 1893.549 kb on - strand, within LRK53_RS08425at 1893.549 kb on - strand, within LRK53_RS08425at 1893.549 kb on - strand, within LRK53_RS08425at 1893.549 kb on - strand, within LRK53_RS08425at 1893.549 kb on - strand, within LRK53_RS08425at 1893.549 kb on - strand, within LRK53_RS08425at 1893.549 kb on - strand, within LRK53_RS08425at 1893.554 kb on + strand, within LRK53_RS08425at 1893.626 kb on + strand, within LRK53_RS08425at 1893.626 kb on + strand, within LRK53_RS08425at 1893.727 kb on + strand, within LRK53_RS08425at 1893.728 kb on - strand, within LRK53_RS08425at 1894.234 kb on - strandat 1894.258 kb on + strandat 1894.258 kb on + strandat 1894.259 kb on - strandat 1894.340 kb on - strand, within LRK53_RS08430at 1894.352 kb on - strand, within LRK53_RS08430at 1894.629 kb on + strandat 1894.630 kb on - strandat 1895.143 kb on + strandat 1895.144 kb on - strandat 1895.144 kb on - strandat 1895.144 kb on - strandat 1895.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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1,893,387 + LRK53_RS08425 0.11 -0.5
1,893,548 + LRK53_RS08425 0.28 -0.9
1,893,548 + LRK53_RS08425 0.28 -0.6
1,893,549 - LRK53_RS08425 0.28 -0.9
1,893,549 - LRK53_RS08425 0.28 -0.1
1,893,549 - LRK53_RS08425 0.28 +2.3
1,893,549 - LRK53_RS08425 0.28 +2.9
1,893,549 - LRK53_RS08425 0.28 +0.9
1,893,549 - LRK53_RS08425 0.28 +0.3
1,893,549 - LRK53_RS08425 0.28 -0.3
1,893,554 + LRK53_RS08425 0.28 +1.0
1,893,626 + LRK53_RS08425 0.36 +0.7
1,893,626 + LRK53_RS08425 0.36 -0.7
1,893,727 + LRK53_RS08425 0.47 +1.8
1,893,728 - LRK53_RS08425 0.47 +1.3
1,894,234 - +0.2
1,894,258 + -1.3
1,894,258 + +0.3
1,894,259 - +0.3
1,894,340 - LRK53_RS08430 0.25 -2.5
1,894,352 - LRK53_RS08430 0.32 -2.3
1,894,629 + -0.6
1,894,630 - -0.4
1,895,143 + +0.4
1,895,144 - +2.3
1,895,144 - +1.7
1,895,144 - -2.7
1,895,144 - +1.8

Or see this region's nucleotide sequence