Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08140

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08135 and LRK53_RS08140 are separated by 217 nucleotidesLRK53_RS08140 and LRK53_RS08145 are separated by 66 nucleotides LRK53_RS08135: LRK53_RS08135 - PepSY domain-containing protein, at 1,827,749 to 1,829,581 _RS08135 LRK53_RS08140: LRK53_RS08140 - hypothetical protein, at 1,829,799 to 1,830,188 _RS08140 LRK53_RS08145: LRK53_RS08145 - TolC family protein, at 1,830,255 to 1,831,502 _RS08145 Position (kb) 1829 1830 1831Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1828.809 kb on + strand, within LRK53_RS08135at 1828.809 kb on + strand, within LRK53_RS08135at 1828.809 kb on + strand, within LRK53_RS08135at 1828.810 kb on - strand, within LRK53_RS08135at 1828.810 kb on - strand, within LRK53_RS08135at 1828.810 kb on - strand, within LRK53_RS08135at 1828.810 kb on - strand, within LRK53_RS08135at 1828.859 kb on + strand, within LRK53_RS08135at 1828.859 kb on + strand, within LRK53_RS08135at 1828.859 kb on + strand, within LRK53_RS08135at 1828.859 kb on + strand, within LRK53_RS08135at 1828.859 kb on + strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.860 kb on - strand, within LRK53_RS08135at 1828.861 kb on - strand, within LRK53_RS08135at 1828.883 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.903 kb on + strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.904 kb on - strand, within LRK53_RS08135at 1828.991 kb on + strand, within LRK53_RS08135at 1828.991 kb on + strand, within LRK53_RS08135at 1828.992 kb on - strand, within LRK53_RS08135at 1828.992 kb on - strand, within LRK53_RS08135at 1829.102 kb on + strand, within LRK53_RS08135at 1829.103 kb on - strand, within LRK53_RS08135at 1829.103 kb on - strand, within LRK53_RS08135at 1829.103 kb on - strand, within LRK53_RS08135at 1829.103 kb on - strand, within LRK53_RS08135at 1829.108 kb on + strand, within LRK53_RS08135at 1829.109 kb on - strand, within LRK53_RS08135at 1829.194 kb on + strand, within LRK53_RS08135at 1829.283 kb on - strand, within LRK53_RS08135at 1829.283 kb on - strand, within LRK53_RS08135at 1829.312 kb on + strand, within LRK53_RS08135at 1829.312 kb on + strand, within LRK53_RS08135at 1829.312 kb on + strand, within LRK53_RS08135at 1829.312 kb on + strand, within LRK53_RS08135at 1829.312 kb on + strand, within LRK53_RS08135at 1829.312 kb on + strand, within LRK53_RS08135at 1829.312 kb on + strand, within LRK53_RS08135at 1829.313 kb on - strand, within LRK53_RS08135at 1829.313 kb on - strand, within LRK53_RS08135at 1829.313 kb on - strand, within LRK53_RS08135at 1829.480 kb on + strandat 1829.481 kb on - strandat 1829.556 kb on + strandat 1829.557 kb on - strandat 1829.557 kb on - strandat 1829.575 kb on + strandat 1829.577 kb on + strandat 1829.577 kb on + strandat 1829.577 kb on + strandat 1829.577 kb on + strandat 1829.577 kb on + strandat 1829.577 kb on + strandat 1829.577 kb on + strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.578 kb on - strandat 1829.786 kb on + strandat 1829.787 kb on - strandat 1829.787 kb on - strandat 1829.787 kb on - strandat 1829.787 kb on - strandat 1829.806 kb on + strandat 1829.806 kb on + strandat 1829.806 kb on + strandat 1829.806 kb on + strandat 1829.806 kb on + strandat 1829.806 kb on + strandat 1829.806 kb on + strandat 1829.807 kb on - strandat 1829.807 kb on - strandat 1829.807 kb on - strandat 1829.807 kb on - strandat 1829.807 kb on - strandat 1829.807 kb on - strandat 1829.807 kb on - strandat 1829.807 kb on - strandat 1829.813 kb on + strandat 1829.813 kb on + strandat 1829.813 kb on + strandat 1829.813 kb on + strandat 1829.813 kb on + strandat 1829.814 kb on - strandat 1829.814 kb on - strandat 1829.918 kb on + strand, within LRK53_RS08140at 1829.918 kb on + strand, within LRK53_RS08140at 1829.918 kb on + strand, within LRK53_RS08140at 1829.919 kb on - strand, within LRK53_RS08140at 1830.045 kb on + strand, within LRK53_RS08140at 1830.045 kb on + strand, within LRK53_RS08140at 1830.045 kb on + strand, within LRK53_RS08140at 1830.045 kb on + strand, within LRK53_RS08140at 1830.046 kb on - strand, within LRK53_RS08140at 1830.046 kb on - strand, within LRK53_RS08140at 1830.046 kb on - strand, within LRK53_RS08140at 1830.265 kb on + strandat 1830.266 kb on - strandat 1830.266 kb on - strandat 1830.854 kb on + strand, within LRK53_RS08145at 1830.854 kb on + strand, within LRK53_RS08145at 1830.854 kb on + strand, within LRK53_RS08145at 1830.855 kb on - strand, within LRK53_RS08145at 1830.855 kb on - strand, within LRK53_RS08145at 1830.855 kb on - strand, within LRK53_RS08145at 1830.855 kb on - strand, within LRK53_RS08145at 1830.945 kb on + strand, within LRK53_RS08145at 1830.945 kb on + strand, within LRK53_RS08145at 1830.946 kb on - strand, within LRK53_RS08145at 1831.061 kb on + strand, within LRK53_RS08145at 1831.061 kb on + strand, within LRK53_RS08145at 1831.061 kb on + strand, within LRK53_RS08145at 1831.062 kb on - strand, within LRK53_RS08145at 1831.165 kb on + strand, within LRK53_RS08145at 1831.165 kb on + strand, within LRK53_RS08145at 1831.166 kb on - strand, within LRK53_RS08145

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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1,828,809 + LRK53_RS08135 0.58 -1.6
1,828,809 + LRK53_RS08135 0.58 -1.5
1,828,809 + LRK53_RS08135 0.58 +1.1
1,828,810 - LRK53_RS08135 0.58 -0.2
1,828,810 - LRK53_RS08135 0.58 -0.6
1,828,810 - LRK53_RS08135 0.58 -1.1
1,828,810 - LRK53_RS08135 0.58 -0.6
1,828,859 + LRK53_RS08135 0.61 -0.6
1,828,859 + LRK53_RS08135 0.61 -0.3
1,828,859 + LRK53_RS08135 0.61 +0.0
1,828,859 + LRK53_RS08135 0.61 -0.9
1,828,859 + LRK53_RS08135 0.61 +0.1
1,828,860 - LRK53_RS08135 0.61 -0.9
1,828,860 - LRK53_RS08135 0.61 -1.2
1,828,860 - LRK53_RS08135 0.61 -1.2
1,828,860 - LRK53_RS08135 0.61 -1.3
1,828,860 - LRK53_RS08135 0.61 +0.7
1,828,860 - LRK53_RS08135 0.61 +0.8
1,828,860 - LRK53_RS08135 0.61 -0.5
1,828,860 - LRK53_RS08135 0.61 -0.2
1,828,860 - LRK53_RS08135 0.61 -0.6
1,828,860 - LRK53_RS08135 0.61 -0.2
1,828,860 - LRK53_RS08135 0.61 -1.2
1,828,860 - LRK53_RS08135 0.61 +0.4
1,828,861 - LRK53_RS08135 0.61 -1.3
1,828,883 + LRK53_RS08135 0.62 +0.4
1,828,903 + LRK53_RS08135 0.63 -0.0
1,828,903 + LRK53_RS08135 0.63 -1.5
1,828,903 + LRK53_RS08135 0.63 +0.1
1,828,903 + LRK53_RS08135 0.63 -2.7
1,828,903 + LRK53_RS08135 0.63 -0.4
1,828,903 + LRK53_RS08135 0.63 -0.5
1,828,903 + LRK53_RS08135 0.63 -1.5
1,828,903 + LRK53_RS08135 0.63 +0.4
1,828,903 + LRK53_RS08135 0.63 -0.3
1,828,904 - LRK53_RS08135 0.63 -0.1
1,828,904 - LRK53_RS08135 0.63 -0.1
1,828,904 - LRK53_RS08135 0.63 +0.6
1,828,904 - LRK53_RS08135 0.63 +0.4
1,828,904 - LRK53_RS08135 0.63 +0.4
1,828,904 - LRK53_RS08135 0.63 -0.5
1,828,904 - LRK53_RS08135 0.63 +1.2
1,828,904 - LRK53_RS08135 0.63 +0.7
1,828,904 - LRK53_RS08135 0.63 -0.5
1,828,904 - LRK53_RS08135 0.63 +1.1
1,828,991 + LRK53_RS08135 0.68 +1.7
1,828,991 + LRK53_RS08135 0.68 -1.2
1,828,992 - LRK53_RS08135 0.68 +1.1
1,828,992 - LRK53_RS08135 0.68 -0.5
1,829,102 + LRK53_RS08135 0.74 +0.1
1,829,103 - LRK53_RS08135 0.74 -0.6
1,829,103 - LRK53_RS08135 0.74 -0.8
1,829,103 - LRK53_RS08135 0.74 +1.4
1,829,103 - LRK53_RS08135 0.74 -0.1
1,829,108 + LRK53_RS08135 0.74 +1.1
1,829,109 - LRK53_RS08135 0.74 -0.8
1,829,194 + LRK53_RS08135 0.79 -0.6
1,829,283 - LRK53_RS08135 0.84 -1.2
1,829,283 - LRK53_RS08135 0.84 -0.9
1,829,312 + LRK53_RS08135 0.85 -0.5
1,829,312 + LRK53_RS08135 0.85 -0.2
1,829,312 + LRK53_RS08135 0.85 +1.7
1,829,312 + LRK53_RS08135 0.85 -0.7
1,829,312 + LRK53_RS08135 0.85 +0.8
1,829,312 + LRK53_RS08135 0.85 -0.1
1,829,312 + LRK53_RS08135 0.85 -0.7
1,829,313 - LRK53_RS08135 0.85 +0.1
1,829,313 - LRK53_RS08135 0.85 -0.5
1,829,313 - LRK53_RS08135 0.85 +0.7
1,829,480 + -2.5
1,829,481 - -0.7
1,829,556 + +0.2
1,829,557 - +1.1
1,829,557 - -0.5
1,829,575 + -1.1
1,829,577 + +0.0
1,829,577 + +0.1
1,829,577 + -0.1
1,829,577 + -1.2
1,829,577 + -0.1
1,829,577 + -0.4
1,829,577 + -0.5
1,829,578 - -0.6
1,829,578 - -1.2
1,829,578 - -0.9
1,829,578 - -0.6
1,829,578 - -1.1
1,829,578 - +0.6
1,829,578 - -1.1
1,829,578 - +0.1
1,829,578 - -0.1
1,829,786 + +0.5
1,829,787 - -2.1
1,829,787 - +1.1
1,829,787 - -0.2
1,829,787 - -0.6
1,829,806 + -1.6
1,829,806 + -0.0
1,829,806 + +0.2
1,829,806 + -0.9
1,829,806 + -0.5
1,829,806 + -0.4
1,829,806 + +0.4
1,829,807 - -1.7
1,829,807 - +1.1
1,829,807 - -1.1
1,829,807 - -1.7
1,829,807 - +0.3
1,829,807 - +0.5
1,829,807 - -1.5
1,829,807 - -2.2
1,829,813 + -0.5
1,829,813 + -0.7
1,829,813 + -0.4
1,829,813 + +0.1
1,829,813 + -0.7
1,829,814 - +0.3
1,829,814 - +1.7
1,829,918 + LRK53_RS08140 0.31 +0.1
1,829,918 + LRK53_RS08140 0.31 -0.8
1,829,918 + LRK53_RS08140 0.31 +1.6
1,829,919 - LRK53_RS08140 0.31 +0.9
1,830,045 + LRK53_RS08140 0.63 -1.7
1,830,045 + LRK53_RS08140 0.63 -1.1
1,830,045 + LRK53_RS08140 0.63 -0.0
1,830,045 + LRK53_RS08140 0.63 -1.9
1,830,046 - LRK53_RS08140 0.63 -0.7
1,830,046 - LRK53_RS08140 0.63 +0.9
1,830,046 - LRK53_RS08140 0.63 -0.2
1,830,265 + -0.4
1,830,266 - -0.1
1,830,266 - +2.9
1,830,854 + LRK53_RS08145 0.48 -0.3
1,830,854 + LRK53_RS08145 0.48 +0.9
1,830,854 + LRK53_RS08145 0.48 +1.1
1,830,855 - LRK53_RS08145 0.48 -0.6
1,830,855 - LRK53_RS08145 0.48 +2.1
1,830,855 - LRK53_RS08145 0.48 -0.5
1,830,855 - LRK53_RS08145 0.48 +0.6
1,830,945 + LRK53_RS08145 0.55 +0.7
1,830,945 + LRK53_RS08145 0.55 -1.7
1,830,946 - LRK53_RS08145 0.55 -1.3
1,831,061 + LRK53_RS08145 0.65 -0.7
1,831,061 + LRK53_RS08145 0.65 -0.0
1,831,061 + LRK53_RS08145 0.65 -1.1
1,831,062 - LRK53_RS08145 0.65 +0.5
1,831,165 + LRK53_RS08145 0.73 -0.3
1,831,165 + LRK53_RS08145 0.73 +0.3
1,831,166 - LRK53_RS08145 0.73 -0.7

Or see this region's nucleotide sequence