Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08020 and LRK53_RS08025 are separated by 170 nucleotides LRK53_RS08025 and LRK53_RS08030 are separated by 56 nucleotides LRK53_RS08030 and LRK53_RS08035 are separated by 65 nucleotides LRK53_RS08035 and LRK53_RS08040 are separated by 37 nucleotides
LRK53_RS08020: LRK53_RS08020 - VOC family protein, at 1,803,195 to 1,803,587
_RS08020
LRK53_RS08025: LRK53_RS08025 - DUF2058 domain-containing protein, at 1,803,758 to 1,804,297
_RS08025
LRK53_RS08030: LRK53_RS08030 - cation diffusion facilitator family transporter, at 1,804,354 to 1,805,256
_RS08030
LRK53_RS08035: LRK53_RS08035 - Slp family lipoprotein, at 1,805,322 to 1,805,840
_RS08035
LRK53_RS08040: LRK53_RS08040 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 1,805,878 to 1,806,792
_RS08040
Position (kb) 1804
1805
1806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1803.520 kb on - strand, within LRK53_RS08020 at 1803.520 kb on - strand, within LRK53_RS08020 at 1803.549 kb on + strand at 1803.550 kb on - strand at 1803.618 kb on - strand at 1803.759 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.798 kb on + strand at 1803.798 kb on + strand at 1803.798 kb on + strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.912 kb on + strand, within LRK53_RS08025 at 1803.912 kb on + strand, within LRK53_RS08025 at 1804.018 kb on - strand, within LRK53_RS08025 at 1804.961 kb on + strand, within LRK53_RS08030 at 1804.961 kb on + strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.292 kb on - strand at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.509 kb on + strand, within LRK53_RS08035 at 1805.509 kb on + strand, within LRK53_RS08035 at 1805.510 kb on - strand, within LRK53_RS08035 at 1805.602 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.879 kb on + strand at 1805.880 kb on - strand at 1805.902 kb on + strand at 1806.216 kb on - strand, within LRK53_RS08040 at 1806.216 kb on - strand, within LRK53_RS08040
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 1,803,520 - LRK53_RS08020 0.83 -0.6 1,803,520 - LRK53_RS08020 0.83 -0.8 1,803,549 + +0.0 1,803,550 - -0.4 1,803,618 - -0.9 1,803,759 + +0.3 1,803,795 + +2.1 1,803,795 + +1.9 1,803,795 + +0.7 1,803,795 + +0.4 1,803,795 + +0.5 1,803,795 + -0.3 1,803,795 + -0.5 1,803,795 + -1.9 1,803,795 + -1.3 1,803,795 + +1.3 1,803,795 + +0.3 1,803,795 + +1.3 1,803,795 + -0.3 1,803,795 + -0.1 1,803,795 + -0.5 1,803,795 + +0.3 1,803,795 + -1.0 1,803,795 + -0.3 1,803,796 - +0.7 1,803,796 - -1.2 1,803,796 - -0.2 1,803,796 - -0.5 1,803,796 - +0.4 1,803,796 - -1.0 1,803,796 - +0.8 1,803,796 - -1.7 1,803,796 - -1.1 1,803,796 - +0.8 1,803,796 - -0.7 1,803,796 - -1.9 1,803,798 + -1.7 1,803,798 + +0.1 1,803,798 + -0.6 1,803,799 - +0.9 1,803,799 - -0.5 1,803,799 - +0.8 1,803,799 - +0.3 1,803,799 - -0.7 1,803,799 - -0.1 1,803,876 + LRK53_RS08025 0.22 +1.1 1,803,876 + LRK53_RS08025 0.22 +0.1 1,803,876 + LRK53_RS08025 0.22 -1.0 1,803,876 + LRK53_RS08025 0.22 +0.4 1,803,876 + LRK53_RS08025 0.22 -2.3 1,803,876 + LRK53_RS08025 0.22 -0.8 1,803,877 - LRK53_RS08025 0.22 -0.3 1,803,877 - LRK53_RS08025 0.22 -1.0 1,803,877 - LRK53_RS08025 0.22 +1.3 1,803,877 - LRK53_RS08025 0.22 +0.3 1,803,877 - LRK53_RS08025 0.22 -1.1 1,803,877 - LRK53_RS08025 0.22 -0.7 1,803,877 - LRK53_RS08025 0.22 +0.3 1,803,877 - LRK53_RS08025 0.22 -0.8 1,803,877 - LRK53_RS08025 0.22 +1.3 1,803,877 - LRK53_RS08025 0.22 -0.7 1,803,912 + LRK53_RS08025 0.29 -0.1 1,803,912 + LRK53_RS08025 0.29 -0.6 1,804,018 - LRK53_RS08025 0.48 +0.3 1,804,961 + LRK53_RS08030 0.67 +1.3 1,804,961 + LRK53_RS08030 0.67 -0.3 1,804,962 - LRK53_RS08030 0.67 -1.5 1,804,962 - LRK53_RS08030 0.67 -0.3 1,804,962 - LRK53_RS08030 0.67 -0.9 1,804,962 - LRK53_RS08030 0.67 -1.4 1,804,962 - LRK53_RS08030 0.67 +3.6 1,804,962 - LRK53_RS08030 0.67 -1.4 1,804,962 - LRK53_RS08030 0.67 -1.5 1,805,021 + LRK53_RS08030 0.74 -2.1 1,805,021 + LRK53_RS08030 0.74 -0.2 1,805,021 + LRK53_RS08030 0.74 -0.2 1,805,021 + LRK53_RS08030 0.74 -1.3 1,805,022 - LRK53_RS08030 0.74 -1.1 1,805,022 - LRK53_RS08030 0.74 +1.3 1,805,022 - LRK53_RS08030 0.74 +0.1 1,805,022 - LRK53_RS08030 0.74 -1.3 1,805,022 - LRK53_RS08030 0.74 -1.2 1,805,292 - -0.6 1,805,434 + LRK53_RS08035 0.22 +0.7 1,805,434 + LRK53_RS08035 0.22 -0.3 1,805,434 + LRK53_RS08035 0.22 -0.6 1,805,434 + LRK53_RS08035 0.22 +1.3 1,805,434 + LRK53_RS08035 0.22 -0.3 1,805,434 + LRK53_RS08035 0.22 -1.9 1,805,434 + LRK53_RS08035 0.22 -0.6 1,805,434 + LRK53_RS08035 0.22 -2.1 1,805,434 + LRK53_RS08035 0.22 -0.3 1,805,434 + LRK53_RS08035 0.22 -0.3 1,805,434 + LRK53_RS08035 0.22 -0.6 1,805,434 + LRK53_RS08035 0.22 +0.6 1,805,434 + LRK53_RS08035 0.22 -0.6 1,805,434 + LRK53_RS08035 0.22 +0.3 1,805,434 + LRK53_RS08035 0.22 -0.7 1,805,434 + LRK53_RS08035 0.22 -0.7 1,805,434 + LRK53_RS08035 0.22 +0.9 1,805,435 - LRK53_RS08035 0.22 +0.2 1,805,435 - LRK53_RS08035 0.22 +0.6 1,805,435 - LRK53_RS08035 0.22 -1.3 1,805,435 - LRK53_RS08035 0.22 +0.4 1,805,435 - LRK53_RS08035 0.22 -1.3 1,805,435 - LRK53_RS08035 0.22 +0.3 1,805,435 - LRK53_RS08035 0.22 +1.5 1,805,435 - LRK53_RS08035 0.22 +1.0 1,805,435 - LRK53_RS08035 0.22 -0.9 1,805,435 - LRK53_RS08035 0.22 -1.1 1,805,435 - LRK53_RS08035 0.22 -0.0 1,805,435 - LRK53_RS08035 0.22 -2.0 1,805,435 - LRK53_RS08035 0.22 -2.1 1,805,435 - LRK53_RS08035 0.22 -0.8 1,805,435 - LRK53_RS08035 0.22 +0.3 1,805,435 - LRK53_RS08035 0.22 -1.7 1,805,435 - LRK53_RS08035 0.22 +1.3 1,805,435 - LRK53_RS08035 0.22 +0.6 1,805,435 - LRK53_RS08035 0.22 +1.3 1,805,435 - LRK53_RS08035 0.22 -1.3 1,805,435 - LRK53_RS08035 0.22 -1.8 1,805,435 - LRK53_RS08035 0.22 +1.9 1,805,435 - LRK53_RS08035 0.22 +0.4 1,805,435 - LRK53_RS08035 0.22 -1.1 1,805,509 + LRK53_RS08035 0.36 -0.8 1,805,509 + LRK53_RS08035 0.36 +1.3 1,805,510 - LRK53_RS08035 0.36 +1.9 1,805,602 + LRK53_RS08035 0.54 +0.3 1,805,749 + LRK53_RS08035 0.82 +1.3 1,805,749 + LRK53_RS08035 0.82 -1.3 1,805,749 + LRK53_RS08035 0.82 -0.7 1,805,749 + LRK53_RS08035 0.82 +1.3 1,805,749 + LRK53_RS08035 0.82 +1.3 1,805,749 + LRK53_RS08035 0.82 -1.7 1,805,749 + LRK53_RS08035 0.82 +0.5 1,805,750 - LRK53_RS08035 0.82 +0.5 1,805,750 - LRK53_RS08035 0.82 -0.3 1,805,750 - LRK53_RS08035 0.82 -3.4 1,805,750 - LRK53_RS08035 0.82 -1.1 1,805,750 - LRK53_RS08035 0.82 -1.3 1,805,750 - LRK53_RS08035 0.82 -1.1 1,805,750 - LRK53_RS08035 0.82 -0.9 1,805,750 - LRK53_RS08035 0.82 +1.3 1,805,879 + -0.3 1,805,880 - -1.5 1,805,902 + -0.3 1,806,216 - LRK53_RS08040 0.37 -0.7 1,806,216 - LRK53_RS08040 0.37 +0.1
Or see this region's nucleotide sequence