Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06665 and LRK53_RS06670 are separated by 191 nucleotides LRK53_RS06670 and LRK53_RS06675 are separated by 36 nucleotides
LRK53_RS06665: LRK53_RS06665 - outer membrane protein assembly factor BamA, at 1,509,472 to 1,511,892
_RS06665
LRK53_RS06670: LRK53_RS06670 - RIP metalloprotease RseP, at 1,512,084 to 1,513,430
_RS06670
LRK53_RS06675: LRK53_RS06675 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,513,467 to 1,514,642
_RS06675
Position (kb)
1512
1513
1514 Strain fitness (log2 ratio)
-2
-1
0
1 at 1511.910 kb on - strand at 1512.005 kb on - strand at 1512.005 kb on - strand at 1512.116 kb on - strand at 1512.116 kb on - strand at 1512.116 kb on - strand at 1512.161 kb on - strand at 1512.161 kb on - strand at 1512.161 kb on - strand at 1512.161 kb on - strand at 1512.161 kb on - strand at 1512.221 kb on - strand, within LRK53_RS06670 at 1512.221 kb on - strand, within LRK53_RS06670 at 1512.221 kb on - strand, within LRK53_RS06670 at 1512.221 kb on - strand, within LRK53_RS06670 at 1512.224 kb on - strand, within LRK53_RS06670 at 1512.224 kb on - strand, within LRK53_RS06670 at 1512.224 kb on - strand, within LRK53_RS06670 at 1512.224 kb on - strand, within LRK53_RS06670 at 1512.224 kb on - strand, within LRK53_RS06670 at 1512.224 kb on - strand, within LRK53_RS06670 at 1512.224 kb on - strand, within LRK53_RS06670 at 1512.399 kb on - strand, within LRK53_RS06670 at 1512.399 kb on - strand, within LRK53_RS06670 at 1512.485 kb on - strand, within LRK53_RS06670 at 1512.485 kb on - strand, within LRK53_RS06670 at 1513.435 kb on + strand at 1513.436 kb on - strand at 1513.436 kb on - strand at 1513.436 kb on - strand at 1513.436 kb on - strand at 1513.436 kb on - strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.465 kb on + strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand at 1513.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 1,511,910 - -1.3 1,512,005 - -1.7 1,512,005 - +1.3 1,512,116 - -1.5 1,512,116 - -1.3 1,512,116 - -2.6 1,512,161 - +0.3 1,512,161 - -1.9 1,512,161 - -0.4 1,512,161 - -0.3 1,512,161 - -0.9 1,512,221 - LRK53_RS06670 0.10 -1.0 1,512,221 - LRK53_RS06670 0.10 -2.3 1,512,221 - LRK53_RS06670 0.10 -1.0 1,512,221 - LRK53_RS06670 0.10 -1.5 1,512,224 - LRK53_RS06670 0.10 +1.3 1,512,224 - LRK53_RS06670 0.10 -2.5 1,512,224 - LRK53_RS06670 0.10 -0.7 1,512,224 - LRK53_RS06670 0.10 -0.7 1,512,224 - LRK53_RS06670 0.10 +0.9 1,512,224 - LRK53_RS06670 0.10 -1.0 1,512,224 - LRK53_RS06670 0.10 -0.3 1,512,399 - LRK53_RS06670 0.23 -1.5 1,512,399 - LRK53_RS06670 0.23 -0.3 1,512,485 - LRK53_RS06670 0.30 -1.3 1,512,485 - LRK53_RS06670 0.30 +0.3 1,513,435 + -0.3 1,513,436 - +1.3 1,513,436 - +0.3 1,513,436 - -0.7 1,513,436 - +0.0 1,513,436 - -0.2 1,513,465 + +0.4 1,513,465 + -0.4 1,513,465 + +1.7 1,513,465 + +0.1 1,513,465 + +1.3 1,513,465 + -0.7 1,513,465 + +1.3 1,513,465 + -1.4 1,513,465 + -1.3 1,513,465 + -0.1 1,513,465 + +0.6 1,513,466 - -0.7 1,513,466 - -1.3 1,513,466 - +0.7 1,513,466 - -0.5 1,513,466 - -0.0 1,513,466 - -0.7 1,513,466 - -0.1 1,513,466 - -0.1 1,513,466 - -0.9 1,513,466 - -0.6
Or see this region's nucleotide sequence