Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06670

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06665 and LRK53_RS06670 are separated by 191 nucleotidesLRK53_RS06670 and LRK53_RS06675 are separated by 36 nucleotides LRK53_RS06665: LRK53_RS06665 - outer membrane protein assembly factor BamA, at 1,509,472 to 1,511,892 _RS06665 LRK53_RS06670: LRK53_RS06670 - RIP metalloprotease RseP, at 1,512,084 to 1,513,430 _RS06670 LRK53_RS06675: LRK53_RS06675 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,513,467 to 1,514,642 _RS06675 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -2 -1 0 1at 1511.910 kb on - strandat 1512.005 kb on - strandat 1512.005 kb on - strandat 1512.116 kb on - strandat 1512.116 kb on - strandat 1512.116 kb on - strandat 1512.161 kb on - strandat 1512.161 kb on - strandat 1512.161 kb on - strandat 1512.161 kb on - strandat 1512.161 kb on - strandat 1512.221 kb on - strand, within LRK53_RS06670at 1512.221 kb on - strand, within LRK53_RS06670at 1512.221 kb on - strand, within LRK53_RS06670at 1512.221 kb on - strand, within LRK53_RS06670at 1512.224 kb on - strand, within LRK53_RS06670at 1512.224 kb on - strand, within LRK53_RS06670at 1512.224 kb on - strand, within LRK53_RS06670at 1512.224 kb on - strand, within LRK53_RS06670at 1512.224 kb on - strand, within LRK53_RS06670at 1512.224 kb on - strand, within LRK53_RS06670at 1512.224 kb on - strand, within LRK53_RS06670at 1512.399 kb on - strand, within LRK53_RS06670at 1512.399 kb on - strand, within LRK53_RS06670at 1512.485 kb on - strand, within LRK53_RS06670at 1512.485 kb on - strand, within LRK53_RS06670at 1513.435 kb on + strandat 1513.436 kb on - strandat 1513.436 kb on - strandat 1513.436 kb on - strandat 1513.436 kb on - strandat 1513.436 kb on - strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.465 kb on + strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strandat 1513.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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1,511,910 - -1.3
1,512,005 - -1.7
1,512,005 - +1.3
1,512,116 - -1.5
1,512,116 - -1.3
1,512,116 - -2.6
1,512,161 - +0.3
1,512,161 - -1.9
1,512,161 - -0.4
1,512,161 - -0.3
1,512,161 - -0.9
1,512,221 - LRK53_RS06670 0.10 -1.0
1,512,221 - LRK53_RS06670 0.10 -2.3
1,512,221 - LRK53_RS06670 0.10 -1.0
1,512,221 - LRK53_RS06670 0.10 -1.5
1,512,224 - LRK53_RS06670 0.10 +1.3
1,512,224 - LRK53_RS06670 0.10 -2.5
1,512,224 - LRK53_RS06670 0.10 -0.7
1,512,224 - LRK53_RS06670 0.10 -0.7
1,512,224 - LRK53_RS06670 0.10 +0.9
1,512,224 - LRK53_RS06670 0.10 -1.0
1,512,224 - LRK53_RS06670 0.10 -0.3
1,512,399 - LRK53_RS06670 0.23 -1.5
1,512,399 - LRK53_RS06670 0.23 -0.3
1,512,485 - LRK53_RS06670 0.30 -1.3
1,512,485 - LRK53_RS06670 0.30 +0.3
1,513,435 + -0.3
1,513,436 - +1.3
1,513,436 - +0.3
1,513,436 - -0.7
1,513,436 - +0.0
1,513,436 - -0.2
1,513,465 + +0.4
1,513,465 + -0.4
1,513,465 + +1.7
1,513,465 + +0.1
1,513,465 + +1.3
1,513,465 + -0.7
1,513,465 + +1.3
1,513,465 + -1.4
1,513,465 + -1.3
1,513,465 + -0.1
1,513,465 + +0.6
1,513,466 - -0.7
1,513,466 - -1.3
1,513,466 - +0.7
1,513,466 - -0.5
1,513,466 - -0.0
1,513,466 - -0.7
1,513,466 - -0.1
1,513,466 - -0.1
1,513,466 - -0.9
1,513,466 - -0.6

Or see this region's nucleotide sequence