Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06505 and LRK53_RS06510 are separated by 58 nucleotides LRK53_RS06510 and LRK53_RS06515 overlap by 25 nucleotides LRK53_RS06515 and LRK53_RS06520 are separated by 94 nucleotides LRK53_RS06520 and LRK53_RS06525 overlap by 4 nucleotides
LRK53_RS06505: LRK53_RS06505 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,473,174 to 1,474,544
_RS06505
LRK53_RS06510: LRK53_RS06510 - amidase family protein, at 1,474,603 to 1,475,274
_RS06510
LRK53_RS06515: LRK53_RS06515 - amidase family protein, at 1,475,250 to 1,475,873
_RS06515
LRK53_RS06520: LRK53_RS06520 - c-type cytochrome, at 1,475,968 to 1,476,726
_RS06520
LRK53_RS06525: LRK53_RS06525 - cytochrome c, at 1,476,723 to 1,478,015
_RS06525
Position (kb) 1475
1476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1474.304 kb on + strand, within LRK53_RS06505 at 1474.452 kb on + strand at 1474.452 kb on + strand at 1474.452 kb on + strand at 1474.452 kb on + strand at 1474.452 kb on + strand at 1474.452 kb on + strand at 1474.452 kb on + strand at 1474.453 kb on - strand at 1474.453 kb on - strand at 1474.453 kb on - strand at 1474.453 kb on - strand at 1474.453 kb on - strand at 1474.453 kb on - strand at 1474.482 kb on + strand at 1474.482 kb on + strand at 1474.483 kb on - strand at 1474.590 kb on + strand at 1474.591 kb on - strand at 1474.591 kb on - strand at 1474.591 kb on - strand at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.988 kb on + strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1474.989 kb on - strand, within LRK53_RS06510 at 1475.135 kb on + strand, within LRK53_RS06510 at 1475.135 kb on + strand, within LRK53_RS06510 at 1475.135 kb on + strand, within LRK53_RS06510 at 1475.135 kb on + strand, within LRK53_RS06510 at 1475.136 kb on - strand, within LRK53_RS06510 at 1475.136 kb on - strand, within LRK53_RS06510 at 1475.136 kb on - strand, within LRK53_RS06510 at 1475.162 kb on + strand, within LRK53_RS06510 at 1475.162 kb on + strand, within LRK53_RS06510 at 1475.163 kb on - strand, within LRK53_RS06510 at 1475.341 kb on + strand, within LRK53_RS06515 at 1475.342 kb on - strand, within LRK53_RS06515 at 1475.342 kb on - strand, within LRK53_RS06515 at 1475.578 kb on + strand, within LRK53_RS06515 at 1475.578 kb on + strand, within LRK53_RS06515 at 1475.579 kb on - strand, within LRK53_RS06515 at 1475.579 kb on - strand, within LRK53_RS06515 at 1475.874 kb on + strand at 1475.875 kb on - strand at 1475.875 kb on - strand at 1475.875 kb on - strand at 1475.875 kb on - strand at 1475.892 kb on + strand at 1475.892 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.956 kb on + strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1475.957 kb on - strand at 1476.166 kb on + strand, within LRK53_RS06520 at 1476.167 kb on - strand, within LRK53_RS06520 at 1476.167 kb on - strand, within LRK53_RS06520 at 1476.199 kb on + strand, within LRK53_RS06520 at 1476.199 kb on + strand, within LRK53_RS06520 at 1476.200 kb on - strand, within LRK53_RS06520 at 1476.200 kb on - strand, within LRK53_RS06520 at 1476.200 kb on - strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.244 kb on + strand, within LRK53_RS06520 at 1476.245 kb on - strand, within LRK53_RS06520 at 1476.245 kb on - strand, within LRK53_RS06520 at 1476.245 kb on - strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.259 kb on + strand, within LRK53_RS06520 at 1476.260 kb on - strand, within LRK53_RS06520 at 1476.260 kb on - strand, within LRK53_RS06520 at 1476.260 kb on - strand, within LRK53_RS06520 at 1476.260 kb on - strand, within LRK53_RS06520 at 1476.260 kb on - strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.286 kb on + strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.287 kb on - strand, within LRK53_RS06520 at 1476.307 kb on + strand, within LRK53_RS06520 at 1476.307 kb on + strand, within LRK53_RS06520 at 1476.308 kb on - strand, within LRK53_RS06520 at 1476.308 kb on - strand, within LRK53_RS06520 at 1476.331 kb on + strand, within LRK53_RS06520 at 1476.332 kb on - strand, within LRK53_RS06520 at 1476.496 kb on + strand, within LRK53_RS06520 at 1476.497 kb on - strand, within LRK53_RS06520 at 1476.502 kb on + strand, within LRK53_RS06520 at 1476.502 kb on + strand, within LRK53_RS06520 at 1476.502 kb on + strand, within LRK53_RS06520 at 1476.502 kb on + strand, within LRK53_RS06520 at 1476.502 kb on + strand, within LRK53_RS06520 at 1476.503 kb on - strand, within LRK53_RS06520 at 1476.503 kb on - strand, within LRK53_RS06520 at 1476.503 kb on - strand, within LRK53_RS06520 at 1476.503 kb on - strand, within LRK53_RS06520 at 1476.503 kb on - strand, within LRK53_RS06520 at 1476.503 kb on - strand, within LRK53_RS06520
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 1,474,304 + LRK53_RS06505 0.82 -1.0 1,474,452 + +0.7 1,474,452 + +1.3 1,474,452 + +0.2 1,474,452 + -0.3 1,474,452 + -0.2 1,474,452 + -0.7 1,474,452 + -0.3 1,474,453 - +0.3 1,474,453 - +1.3 1,474,453 - +0.6 1,474,453 - +1.3 1,474,453 - +0.6 1,474,453 - +0.5 1,474,482 + -3.7 1,474,482 + +0.3 1,474,483 - +2.9 1,474,590 + +0.2 1,474,591 - -0.7 1,474,591 - +2.0 1,474,591 - -0.6 1,474,988 + LRK53_RS06510 0.57 -0.9 1,474,988 + LRK53_RS06510 0.57 -0.1 1,474,988 + LRK53_RS06510 0.57 -0.1 1,474,988 + LRK53_RS06510 0.57 +0.1 1,474,988 + LRK53_RS06510 0.57 +1.0 1,474,988 + LRK53_RS06510 0.57 +0.6 1,474,988 + LRK53_RS06510 0.57 -0.4 1,474,988 + LRK53_RS06510 0.57 -0.3 1,474,988 + LRK53_RS06510 0.57 -1.2 1,474,988 + LRK53_RS06510 0.57 +0.3 1,474,988 + LRK53_RS06510 0.57 -1.9 1,474,988 + LRK53_RS06510 0.57 +0.9 1,474,988 + LRK53_RS06510 0.57 -0.9 1,474,988 + LRK53_RS06510 0.57 -2.0 1,474,988 + LRK53_RS06510 0.57 +1.3 1,474,988 + LRK53_RS06510 0.57 -0.4 1,474,988 + LRK53_RS06510 0.57 +0.6 1,474,988 + LRK53_RS06510 0.57 -0.6 1,474,989 - LRK53_RS06510 0.57 +0.0 1,474,989 - LRK53_RS06510 0.57 -1.9 1,474,989 - LRK53_RS06510 0.57 -0.0 1,474,989 - LRK53_RS06510 0.57 +1.6 1,474,989 - LRK53_RS06510 0.57 +1.8 1,474,989 - LRK53_RS06510 0.57 +0.2 1,474,989 - LRK53_RS06510 0.57 +1.3 1,474,989 - LRK53_RS06510 0.57 +0.3 1,474,989 - LRK53_RS06510 0.57 +2.3 1,474,989 - LRK53_RS06510 0.57 -1.3 1,474,989 - LRK53_RS06510 0.57 +1.5 1,474,989 - LRK53_RS06510 0.57 -1.8 1,474,989 - LRK53_RS06510 0.57 -0.6 1,474,989 - LRK53_RS06510 0.57 +0.3 1,474,989 - LRK53_RS06510 0.57 -1.1 1,474,989 - LRK53_RS06510 0.57 -2.0 1,474,989 - LRK53_RS06510 0.57 -0.1 1,474,989 - LRK53_RS06510 0.57 +1.3 1,474,989 - LRK53_RS06510 0.57 +0.6 1,474,989 - LRK53_RS06510 0.57 -0.7 1,474,989 - LRK53_RS06510 0.57 -0.7 1,474,989 - LRK53_RS06510 0.57 -0.3 1,474,989 - LRK53_RS06510 0.57 +0.7 1,474,989 - LRK53_RS06510 0.57 +1.3 1,474,989 - LRK53_RS06510 0.57 -0.2 1,474,989 - LRK53_RS06510 0.57 -0.2 1,474,989 - LRK53_RS06510 0.57 +0.3 1,474,989 - LRK53_RS06510 0.57 +0.7 1,474,989 - LRK53_RS06510 0.57 -0.7 1,475,135 + LRK53_RS06510 0.79 -0.4 1,475,135 + LRK53_RS06510 0.79 -0.3 1,475,135 + LRK53_RS06510 0.79 -0.3 1,475,135 + LRK53_RS06510 0.79 -0.3 1,475,136 - LRK53_RS06510 0.79 -0.7 1,475,136 - LRK53_RS06510 0.79 +0.9 1,475,136 - LRK53_RS06510 0.79 -1.3 1,475,162 + LRK53_RS06510 0.83 -1.5 1,475,162 + LRK53_RS06510 0.83 +0.5 1,475,163 - LRK53_RS06510 0.83 +1.0 1,475,341 + LRK53_RS06515 0.15 -0.3 1,475,342 - LRK53_RS06515 0.15 -0.7 1,475,342 - LRK53_RS06515 0.15 +1.3 1,475,578 + LRK53_RS06515 0.53 +1.3 1,475,578 + LRK53_RS06515 0.53 -0.9 1,475,579 - LRK53_RS06515 0.53 -0.3 1,475,579 - LRK53_RS06515 0.53 -0.8 1,475,874 + +2.3 1,475,875 - +1.3 1,475,875 - +0.3 1,475,875 - -1.2 1,475,875 - -1.0 1,475,892 + +1.3 1,475,892 + -1.1 1,475,956 + +0.2 1,475,956 + +0.7 1,475,956 + +1.3 1,475,956 + -0.4 1,475,956 + +0.3 1,475,956 + +1.3 1,475,956 + -0.4 1,475,956 + -0.0 1,475,956 + +0.3 1,475,956 + -2.8 1,475,957 - -0.5 1,475,957 - -1.3 1,475,957 - -0.1 1,475,957 - -1.9 1,475,957 - -0.6 1,475,957 - -0.7 1,475,957 - +1.3 1,475,957 - -1.0 1,475,957 - +1.3 1,475,957 - +1.3 1,475,957 - +0.6 1,475,957 - +1.3 1,475,957 - -1.1 1,475,957 - -1.5 1,475,957 - +0.3 1,475,957 - -0.7 1,475,957 - -0.3 1,475,957 - -0.5 1,475,957 - +0.3 1,476,166 + LRK53_RS06520 0.26 +0.9 1,476,167 - LRK53_RS06520 0.26 +0.3 1,476,167 - LRK53_RS06520 0.26 -0.7 1,476,199 + LRK53_RS06520 0.30 +0.1 1,476,199 + LRK53_RS06520 0.30 +0.9 1,476,200 - LRK53_RS06520 0.31 -0.3 1,476,200 - LRK53_RS06520 0.31 +0.3 1,476,200 - LRK53_RS06520 0.31 -0.0 1,476,244 + LRK53_RS06520 0.36 -0.2 1,476,244 + LRK53_RS06520 0.36 -0.3 1,476,244 + LRK53_RS06520 0.36 -1.5 1,476,244 + LRK53_RS06520 0.36 +1.9 1,476,244 + LRK53_RS06520 0.36 +2.9 1,476,244 + LRK53_RS06520 0.36 +0.7 1,476,244 + LRK53_RS06520 0.36 +1.3 1,476,244 + LRK53_RS06520 0.36 +1.3 1,476,244 + LRK53_RS06520 0.36 -0.7 1,476,245 - LRK53_RS06520 0.36 -0.4 1,476,245 - LRK53_RS06520 0.36 +0.7 1,476,245 - LRK53_RS06520 0.36 -0.7 1,476,259 + LRK53_RS06520 0.38 -0.3 1,476,259 + LRK53_RS06520 0.38 +0.7 1,476,259 + LRK53_RS06520 0.38 -0.7 1,476,259 + LRK53_RS06520 0.38 +0.3 1,476,259 + LRK53_RS06520 0.38 -0.6 1,476,259 + LRK53_RS06520 0.38 -1.0 1,476,259 + LRK53_RS06520 0.38 -3.3 1,476,259 + LRK53_RS06520 0.38 -0.0 1,476,259 + LRK53_RS06520 0.38 +1.3 1,476,259 + LRK53_RS06520 0.38 -1.0 1,476,259 + LRK53_RS06520 0.38 +2.9 1,476,259 + LRK53_RS06520 0.38 -0.6 1,476,259 + LRK53_RS06520 0.38 -0.0 1,476,259 + LRK53_RS06520 0.38 -2.5 1,476,259 + LRK53_RS06520 0.38 -0.9 1,476,260 - LRK53_RS06520 0.38 +0.1 1,476,260 - LRK53_RS06520 0.38 -1.0 1,476,260 - LRK53_RS06520 0.38 +1.0 1,476,260 - LRK53_RS06520 0.38 -1.8 1,476,260 - LRK53_RS06520 0.38 +0.7 1,476,286 + LRK53_RS06520 0.42 +2.3 1,476,286 + LRK53_RS06520 0.42 -0.4 1,476,286 + LRK53_RS06520 0.42 +1.3 1,476,286 + LRK53_RS06520 0.42 +0.3 1,476,286 + LRK53_RS06520 0.42 -0.9 1,476,286 + LRK53_RS06520 0.42 +0.9 1,476,286 + LRK53_RS06520 0.42 -0.4 1,476,286 + LRK53_RS06520 0.42 +1.3 1,476,286 + LRK53_RS06520 0.42 +0.8 1,476,287 - LRK53_RS06520 0.42 +0.3 1,476,287 - LRK53_RS06520 0.42 -1.0 1,476,287 - LRK53_RS06520 0.42 -1.0 1,476,287 - LRK53_RS06520 0.42 -0.7 1,476,287 - LRK53_RS06520 0.42 -0.2 1,476,287 - LRK53_RS06520 0.42 -0.5 1,476,287 - LRK53_RS06520 0.42 +0.4 1,476,287 - LRK53_RS06520 0.42 -0.2 1,476,287 - LRK53_RS06520 0.42 +1.0 1,476,307 + LRK53_RS06520 0.45 -0.3 1,476,307 + LRK53_RS06520 0.45 -0.9 1,476,308 - LRK53_RS06520 0.45 -0.0 1,476,308 - LRK53_RS06520 0.45 -0.6 1,476,331 + LRK53_RS06520 0.48 -0.3 1,476,332 - LRK53_RS06520 0.48 -0.3 1,476,496 + LRK53_RS06520 0.70 -1.3 1,476,497 - LRK53_RS06520 0.70 -2.0 1,476,502 + LRK53_RS06520 0.70 +1.0 1,476,502 + LRK53_RS06520 0.70 -1.0 1,476,502 + LRK53_RS06520 0.70 +0.3 1,476,502 + LRK53_RS06520 0.70 +0.3 1,476,502 + LRK53_RS06520 0.70 -0.4 1,476,503 - LRK53_RS06520 0.70 -1.5 1,476,503 - LRK53_RS06520 0.70 +0.3 1,476,503 - LRK53_RS06520 0.70 +2.5 1,476,503 - LRK53_RS06520 0.70 -0.0 1,476,503 - LRK53_RS06520 0.70 +1.3 1,476,503 - LRK53_RS06520 0.70 +0.6
Or see this region's nucleotide sequence