Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05735 and LRK53_RS05740 overlap by 4 nucleotides LRK53_RS05740 and LRK53_RS05745 are separated by 130 nucleotides LRK53_RS05745 and LRK53_RS05750 are separated by 103 nucleotides
LRK53_RS05735: LRK53_RS05735 - response regulator, at 1,329,257 to 1,329,628
_RS05735
LRK53_RS05740: LRK53_RS05740 - chemotaxis protein CheW, at 1,329,625 to 1,330,164
_RS05740
LRK53_RS05745: LRK53_RS05745 - methyl-accepting chemotaxis protein, at 1,330,295 to 1,332,325
_RS05745
LRK53_RS05750: LRK53_RS05750 - Hpt domain-containing protein, at 1,332,429 to 1,338,527
_RS05750
Position (kb) 1330
1331
1332
1333 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1329.451 kb on + strand, within LRK53_RS05735 at 1329.451 kb on + strand, within LRK53_RS05735 at 1329.451 kb on + strand, within LRK53_RS05735 at 1329.451 kb on + strand, within LRK53_RS05735 at 1329.452 kb on - strand, within LRK53_RS05735 at 1329.452 kb on - strand, within LRK53_RS05735 at 1329.452 kb on - strand, within LRK53_RS05735 at 1329.452 kb on - strand, within LRK53_RS05735 at 1329.452 kb on - strand, within LRK53_RS05735 at 1329.452 kb on - strand, within LRK53_RS05735 at 1329.483 kb on + strand, within LRK53_RS05735 at 1329.483 kb on + strand, within LRK53_RS05735 at 1329.703 kb on - strand, within LRK53_RS05740 at 1329.703 kb on - strand, within LRK53_RS05740 at 1330.130 kb on + strand at 1330.130 kb on + strand at 1330.269 kb on + strand at 1330.269 kb on + strand at 1330.270 kb on - strand at 1330.270 kb on - strand at 1330.270 kb on - strand at 1330.270 kb on - strand at 1330.278 kb on - strand at 1330.278 kb on - strand at 1330.278 kb on - strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.303 kb on + strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.304 kb on - strand at 1330.331 kb on + strand at 1330.331 kb on + strand at 1330.332 kb on - strand at 1330.333 kb on + strand at 1330.334 kb on - strand at 1330.334 kb on - strand at 1330.334 kb on - strand at 1330.334 kb on - strand at 1330.598 kb on + strand, within LRK53_RS05745 at 1330.943 kb on + strand, within LRK53_RS05745 at 1330.944 kb on - strand, within LRK53_RS05745 at 1330.944 kb on - strand, within LRK53_RS05745 at 1330.944 kb on - strand, within LRK53_RS05745 at 1330.944 kb on - strand, within LRK53_RS05745 at 1331.317 kb on + strand, within LRK53_RS05745 at 1331.318 kb on - strand, within LRK53_RS05745 at 1331.453 kb on + strand, within LRK53_RS05745 at 1331.453 kb on + strand, within LRK53_RS05745 at 1331.453 kb on + strand, within LRK53_RS05745 at 1331.453 kb on + strand, within LRK53_RS05745 at 1331.454 kb on - strand, within LRK53_RS05745 at 1331.454 kb on - strand, within LRK53_RS05745 at 1331.454 kb on - strand, within LRK53_RS05745 at 1331.454 kb on - strand, within LRK53_RS05745 at 1332.181 kb on + strand at 1332.181 kb on + strand at 1332.525 kb on + strand at 1332.525 kb on + strand at 1332.525 kb on + strand at 1332.525 kb on + strand at 1332.525 kb on + strand at 1332.526 kb on - strand at 1332.526 kb on - strand at 1332.526 kb on - strand at 1332.526 kb on - strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.552 kb on + strand at 1332.553 kb on - strand at 1332.553 kb on - strand at 1332.553 kb on - strand at 1332.553 kb on - strand at 1332.553 kb on - strand at 1332.553 kb on - strand at 1332.553 kb on - strand at 1332.553 kb on - strand at 1332.615 kb on + strand at 1332.615 kb on + strand at 1332.616 kb on - strand at 1332.616 kb on - strand at 1332.684 kb on + strand at 1332.684 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.699 kb on + strand at 1332.700 kb on - strand at 1332.700 kb on - strand at 1332.700 kb on - strand at 1332.700 kb on - strand at 1332.700 kb on - strand at 1332.738 kb on + strand at 1332.739 kb on - strand at 1332.739 kb on - strand at 1332.909 kb on + strand at 1332.909 kb on + strand at 1332.910 kb on - strand at 1333.013 kb on + strand at 1333.013 kb on + strand at 1333.013 kb on + strand at 1333.013 kb on + strand at 1333.014 kb on - strand at 1333.014 kb on - strand at 1333.014 kb on - strand at 1333.014 kb on - strand at 1333.014 kb on - strand at 1333.014 kb on - strand at 1333.014 kb on - strand at 1333.248 kb on + strand, within LRK53_RS05750 at 1333.248 kb on + strand, within LRK53_RS05750 at 1333.248 kb on + strand, within LRK53_RS05750 at 1333.248 kb on + strand, within LRK53_RS05750 at 1333.248 kb on + strand, within LRK53_RS05750 at 1333.248 kb on + strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.249 kb on - strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.305 kb on + strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750 at 1333.306 kb on - strand, within LRK53_RS05750
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 1,329,451 + LRK53_RS05735 0.52 -1.0 1,329,451 + LRK53_RS05735 0.52 +0.4 1,329,451 + LRK53_RS05735 0.52 -1.4 1,329,451 + LRK53_RS05735 0.52 -0.4 1,329,452 - LRK53_RS05735 0.52 -0.4 1,329,452 - LRK53_RS05735 0.52 -2.0 1,329,452 - LRK53_RS05735 0.52 +1.9 1,329,452 - LRK53_RS05735 0.52 -0.4 1,329,452 - LRK53_RS05735 0.52 +0.3 1,329,452 - LRK53_RS05735 0.52 -2.3 1,329,483 + LRK53_RS05735 0.61 +1.3 1,329,483 + LRK53_RS05735 0.61 +0.2 1,329,703 - LRK53_RS05740 0.14 +0.4 1,329,703 - LRK53_RS05740 0.14 -1.1 1,330,130 + -1.3 1,330,130 + -0.7 1,330,269 + +0.9 1,330,269 + -0.1 1,330,270 - +2.0 1,330,270 - +0.6 1,330,270 - -0.2 1,330,270 - -1.5 1,330,278 - -0.9 1,330,278 - +0.5 1,330,278 - -1.9 1,330,303 + -0.7 1,330,303 + -1.5 1,330,303 + -1.5 1,330,303 + -1.0 1,330,303 + +2.3 1,330,303 + -1.9 1,330,303 + +0.6 1,330,303 + -1.3 1,330,303 + -0.4 1,330,303 + +0.8 1,330,303 + -0.0 1,330,303 + +2.6 1,330,303 + -0.0 1,330,304 - -0.3 1,330,304 - -0.8 1,330,304 - -3.9 1,330,304 - -0.3 1,330,304 - +0.3 1,330,304 - -0.5 1,330,304 - -1.0 1,330,304 - +0.1 1,330,304 - -0.7 1,330,331 + -1.9 1,330,331 + -0.7 1,330,332 - -2.0 1,330,333 + +1.3 1,330,334 - -0.6 1,330,334 - +1.7 1,330,334 - +0.7 1,330,334 - -1.5 1,330,598 + LRK53_RS05745 0.15 -1.2 1,330,943 + LRK53_RS05745 0.32 -1.3 1,330,944 - LRK53_RS05745 0.32 -2.5 1,330,944 - LRK53_RS05745 0.32 -1.2 1,330,944 - LRK53_RS05745 0.32 -1.3 1,330,944 - LRK53_RS05745 0.32 +1.9 1,331,317 + LRK53_RS05745 0.50 -1.4 1,331,318 - LRK53_RS05745 0.50 -1.3 1,331,453 + LRK53_RS05745 0.57 -0.3 1,331,453 + LRK53_RS05745 0.57 +2.3 1,331,453 + LRK53_RS05745 0.57 +0.3 1,331,453 + LRK53_RS05745 0.57 +0.3 1,331,454 - LRK53_RS05745 0.57 +0.1 1,331,454 - LRK53_RS05745 0.57 -0.7 1,331,454 - LRK53_RS05745 0.57 -0.3 1,331,454 - LRK53_RS05745 0.57 -0.7 1,332,181 + -2.7 1,332,181 + -1.5 1,332,525 + +0.7 1,332,525 + +0.2 1,332,525 + -0.5 1,332,525 + -1.0 1,332,525 + +1.3 1,332,526 - -1.6 1,332,526 - +0.3 1,332,526 - +0.6 1,332,526 - +0.1 1,332,552 + -0.4 1,332,552 + +1.9 1,332,552 + +0.3 1,332,552 + -0.5 1,332,552 + -0.2 1,332,552 + +0.7 1,332,552 + -0.7 1,332,552 + -0.9 1,332,552 + -2.9 1,332,552 + -0.3 1,332,552 + -1.9 1,332,552 + -0.0 1,332,553 - -0.0 1,332,553 - -1.0 1,332,553 - +0.0 1,332,553 - -0.3 1,332,553 - +1.6 1,332,553 - -1.1 1,332,553 - -0.0 1,332,553 - -0.0 1,332,615 + +0.4 1,332,615 + +0.3 1,332,616 - -0.7 1,332,616 - +0.5 1,332,684 + +0.4 1,332,684 + -2.3 1,332,699 + +0.3 1,332,699 + -2.2 1,332,699 + -0.5 1,332,699 + +1.3 1,332,699 + -1.5 1,332,699 + +0.2 1,332,699 + +0.1 1,332,699 + -0.0 1,332,699 + +0.3 1,332,699 + -0.3 1,332,699 + +0.3 1,332,699 + -1.3 1,332,699 + -0.1 1,332,699 + +0.9 1,332,699 + +0.7 1,332,700 - -1.6 1,332,700 - +0.3 1,332,700 - +0.8 1,332,700 - +3.3 1,332,700 - +1.3 1,332,738 + +1.0 1,332,739 - +0.4 1,332,739 - -0.8 1,332,909 + +0.6 1,332,909 + -0.4 1,332,910 - +1.2 1,333,013 + +1.3 1,333,013 + +1.9 1,333,013 + +0.3 1,333,013 + +0.9 1,333,014 - -1.4 1,333,014 - -0.2 1,333,014 - +3.3 1,333,014 - +0.6 1,333,014 - +0.6 1,333,014 - -0.0 1,333,014 - -1.5 1,333,248 + LRK53_RS05750 0.13 +2.0 1,333,248 + LRK53_RS05750 0.13 -0.0 1,333,248 + LRK53_RS05750 0.13 -0.7 1,333,248 + LRK53_RS05750 0.13 -0.3 1,333,248 + LRK53_RS05750 0.13 +1.3 1,333,248 + LRK53_RS05750 0.13 +2.3 1,333,249 - LRK53_RS05750 0.13 -2.0 1,333,249 - LRK53_RS05750 0.13 +0.0 1,333,249 - LRK53_RS05750 0.13 -0.7 1,333,249 - LRK53_RS05750 0.13 +0.1 1,333,249 - LRK53_RS05750 0.13 +0.4 1,333,249 - LRK53_RS05750 0.13 +0.4 1,333,249 - LRK53_RS05750 0.13 -0.7 1,333,249 - LRK53_RS05750 0.13 -0.2 1,333,249 - LRK53_RS05750 0.13 +0.1 1,333,249 - LRK53_RS05750 0.13 +0.9 1,333,249 - LRK53_RS05750 0.13 -1.9 1,333,249 - LRK53_RS05750 0.13 +1.3 1,333,249 - LRK53_RS05750 0.13 -1.9 1,333,305 + LRK53_RS05750 0.14 -0.3 1,333,305 + LRK53_RS05750 0.14 -0.7 1,333,305 + LRK53_RS05750 0.14 +0.3 1,333,305 + LRK53_RS05750 0.14 -1.4 1,333,305 + LRK53_RS05750 0.14 +2.3 1,333,305 + LRK53_RS05750 0.14 -0.0 1,333,305 + LRK53_RS05750 0.14 +0.6 1,333,305 + LRK53_RS05750 0.14 +1.6 1,333,305 + LRK53_RS05750 0.14 -0.7 1,333,305 + LRK53_RS05750 0.14 -0.2 1,333,305 + LRK53_RS05750 0.14 -1.1 1,333,305 + LRK53_RS05750 0.14 +1.3 1,333,305 + LRK53_RS05750 0.14 +0.7 1,333,305 + LRK53_RS05750 0.14 +0.1 1,333,305 + LRK53_RS05750 0.14 -1.1 1,333,305 + LRK53_RS05750 0.14 -0.0 1,333,305 + LRK53_RS05750 0.14 +1.0 1,333,305 + LRK53_RS05750 0.14 +1.3 1,333,305 + LRK53_RS05750 0.14 -0.9 1,333,305 + LRK53_RS05750 0.14 -1.9 1,333,305 + LRK53_RS05750 0.14 +0.3 1,333,305 + LRK53_RS05750 0.14 -1.2 1,333,305 + LRK53_RS05750 0.14 -0.5 1,333,305 + LRK53_RS05750 0.14 -0.7 1,333,306 - LRK53_RS05750 0.14 +0.0 1,333,306 - LRK53_RS05750 0.14 -2.0 1,333,306 - LRK53_RS05750 0.14 -0.0 1,333,306 - LRK53_RS05750 0.14 -1.3 1,333,306 - LRK53_RS05750 0.14 -2.9 1,333,306 - LRK53_RS05750 0.14 -2.0 1,333,306 - LRK53_RS05750 0.14 -0.3 1,333,306 - LRK53_RS05750 0.14 +0.3 1,333,306 - LRK53_RS05750 0.14 +0.4 1,333,306 - LRK53_RS05750 0.14 -1.3 1,333,306 - LRK53_RS05750 0.14 +0.7 1,333,306 - LRK53_RS05750 0.14 -1.3 1,333,306 - LRK53_RS05750 0.14 -1.0 1,333,306 - LRK53_RS05750 0.14 +1.9 1,333,306 - LRK53_RS05750 0.14 +0.3 1,333,306 - LRK53_RS05750 0.14 -1.3 1,333,306 - LRK53_RS05750 0.14 +1.0 1,333,306 - LRK53_RS05750 0.14 -0.5 1,333,306 - LRK53_RS05750 0.14 +1.3 1,333,306 - LRK53_RS05750 0.14 +0.3 1,333,306 - LRK53_RS05750 0.14 +0.0 1,333,306 - LRK53_RS05750 0.14 +1.1 1,333,306 - LRK53_RS05750 0.14 +1.3 1,333,306 - LRK53_RS05750 0.14 -0.7 1,333,306 - LRK53_RS05750 0.14 +1.0 1,333,306 - LRK53_RS05750 0.14 -0.5 1,333,306 - LRK53_RS05750 0.14 +1.3 1,333,306 - LRK53_RS05750 0.14 -1.7
Or see this region's nucleotide sequence