Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04435 and LRK53_RS04440 are separated by 116 nucleotides LRK53_RS04440 and LRK53_RS04445 are separated by 111 nucleotides LRK53_RS04445 and LRK53_RS04450 are separated by 143 nucleotides LRK53_RS04450 and LRK53_RS04455 overlap by 4 nucleotides LRK53_RS04455 and LRK53_RS04460 are separated by 157 nucleotides
LRK53_RS04435: LRK53_RS04435 - electron transfer flavoprotein subunit alpha/FixB family protein, at 1,030,551 to 1,031,495
_RS04435
LRK53_RS04440: LRK53_RS04440 - electron transfer flavoprotein subunit beta/FixA family protein, at 1,031,612 to 1,032,358
_RS04440
LRK53_RS04445: LRK53_RS04445 - glycoside hydrolase family 99-like domain-containing protein, at 1,032,470 to 1,034,530
_RS04445
LRK53_RS04450: LRK53_RS04450 - transcriptional regulator, at 1,034,674 to 1,035,015
_RS04450
LRK53_RS04455: LRK53_RS04455 - DUF6516 family protein, at 1,035,012 to 1,035,299
_RS04455
LRK53_RS04460: LRK53_RS04460 - glycosyltransferase, at 1,035,457 to 1,037,436
_RS04460
Position (kb) 1032
1033
1034
1035 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.700 kb on + strand, within LRK53_RS04440 at 1031.700 kb on + strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.340 kb on - strand at 1032.340 kb on - strand at 1032.432 kb on + strand at 1032.433 kb on - strand at 1032.795 kb on + strand, within LRK53_RS04445 at 1032.795 kb on + strand, within LRK53_RS04445 at 1032.972 kb on - strand, within LRK53_RS04445 at 1033.687 kb on - strand, within LRK53_RS04445 at 1033.687 kb on - strand, within LRK53_RS04445 at 1034.038 kb on - strand, within LRK53_RS04445 at 1034.254 kb on - strand, within LRK53_RS04445 at 1034.490 kb on - strand at 1034.675 kb on + strand at 1034.676 kb on - strand at 1034.676 kb on - strand at 1034.717 kb on + strand, within LRK53_RS04450 at 1034.718 kb on - strand, within LRK53_RS04450 at 1034.718 kb on - strand, within LRK53_RS04450 at 1034.729 kb on - strand, within LRK53_RS04450 at 1034.729 kb on - strand, within LRK53_RS04450 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.150 kb on + strand, within LRK53_RS04455 at 1035.150 kb on + strand, within LRK53_RS04455 at 1035.151 kb on - strand, within LRK53_RS04455 at 1035.151 kb on - strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.338 kb on + strand at 1035.339 kb on - strand at 1035.448 kb on + strand at 1035.448 kb on + strand at 1035.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 1,031,613 + +2.3 1,031,613 + +1.3 1,031,613 + +1.1 1,031,613 + -0.3 1,031,613 + -1.0 1,031,613 + +0.3 1,031,613 + -1.9 1,031,700 + LRK53_RS04440 0.12 -0.7 1,031,700 + LRK53_RS04440 0.12 -0.7 1,031,701 - LRK53_RS04440 0.12 +0.1 1,031,701 - LRK53_RS04440 0.12 +0.1 1,031,701 - LRK53_RS04440 0.12 -0.3 1,031,701 - LRK53_RS04440 0.12 -0.3 1,031,701 - LRK53_RS04440 0.12 +0.3 1,031,701 - LRK53_RS04440 0.12 -0.4 1,032,321 + +0.3 1,032,321 + -1.5 1,032,321 + -0.3 1,032,321 + -0.9 1,032,321 + +1.3 1,032,321 + -1.4 1,032,321 + +0.8 1,032,321 + +1.0 1,032,321 + -0.1 1,032,322 - +0.4 1,032,322 - +2.9 1,032,322 - +0.7 1,032,322 - +1.7 1,032,322 - -0.5 1,032,322 - -1.0 1,032,322 - +0.6 1,032,340 - +2.3 1,032,340 - -2.4 1,032,432 + -0.5 1,032,433 - +0.4 1,032,795 + LRK53_RS04445 0.16 +1.3 1,032,795 + LRK53_RS04445 0.16 -1.5 1,032,972 - LRK53_RS04445 0.24 +0.7 1,033,687 - LRK53_RS04445 0.59 +1.3 1,033,687 - LRK53_RS04445 0.59 +0.3 1,034,038 - LRK53_RS04445 0.76 -1.3 1,034,254 - LRK53_RS04445 0.87 -1.0 1,034,490 - +1.3 1,034,675 + -0.9 1,034,676 - -0.1 1,034,676 - -0.1 1,034,717 + LRK53_RS04450 0.13 -0.2 1,034,718 - LRK53_RS04450 0.13 -1.0 1,034,718 - LRK53_RS04450 0.13 +0.2 1,034,729 - LRK53_RS04450 0.16 -0.8 1,034,729 - LRK53_RS04450 0.16 -0.4 1,035,085 + LRK53_RS04455 0.25 -0.5 1,035,085 + LRK53_RS04455 0.25 +0.3 1,035,085 + LRK53_RS04455 0.25 -0.3 1,035,086 - LRK53_RS04455 0.26 -1.0 1,035,086 - LRK53_RS04455 0.26 +0.0 1,035,086 - LRK53_RS04455 0.26 -1.1 1,035,086 - LRK53_RS04455 0.26 -0.5 1,035,086 - LRK53_RS04455 0.26 -1.5 1,035,086 - LRK53_RS04455 0.26 +0.0 1,035,086 - LRK53_RS04455 0.26 -1.5 1,035,086 - LRK53_RS04455 0.26 +0.3 1,035,142 + LRK53_RS04455 0.45 +0.3 1,035,142 + LRK53_RS04455 0.45 -0.5 1,035,142 + LRK53_RS04455 0.45 -0.4 1,035,142 + LRK53_RS04455 0.45 -0.6 1,035,142 + LRK53_RS04455 0.45 -0.7 1,035,142 + LRK53_RS04455 0.45 +1.3 1,035,142 + LRK53_RS04455 0.45 -1.4 1,035,142 + LRK53_RS04455 0.45 +0.1 1,035,143 - LRK53_RS04455 0.45 -2.2 1,035,143 - LRK53_RS04455 0.45 +2.0 1,035,143 - LRK53_RS04455 0.45 +0.4 1,035,143 - LRK53_RS04455 0.45 -1.0 1,035,143 - LRK53_RS04455 0.45 -0.7 1,035,150 + LRK53_RS04455 0.48 +0.8 1,035,150 + LRK53_RS04455 0.48 +0.9 1,035,151 - LRK53_RS04455 0.48 -0.1 1,035,151 - LRK53_RS04455 0.48 -1.7 1,035,184 + LRK53_RS04455 0.60 -2.0 1,035,184 + LRK53_RS04455 0.60 +1.1 1,035,184 + LRK53_RS04455 0.60 -3.3 1,035,184 + LRK53_RS04455 0.60 +1.1 1,035,184 + LRK53_RS04455 0.60 +2.3 1,035,184 + LRK53_RS04455 0.60 +0.7 1,035,184 + LRK53_RS04455 0.60 +0.3 1,035,184 + LRK53_RS04455 0.60 -0.7 1,035,184 + LRK53_RS04455 0.60 -1.5 1,035,184 + LRK53_RS04455 0.60 +0.9 1,035,184 + LRK53_RS04455 0.60 -1.7 1,035,184 + LRK53_RS04455 0.60 -0.3 1,035,184 + LRK53_RS04455 0.60 -0.4 1,035,184 + LRK53_RS04455 0.60 -1.8 1,035,184 + LRK53_RS04455 0.60 -1.1 1,035,184 + LRK53_RS04455 0.60 -1.0 1,035,184 + LRK53_RS04455 0.60 +0.7 1,035,185 - LRK53_RS04455 0.60 +0.9 1,035,185 - LRK53_RS04455 0.60 -0.3 1,035,185 - LRK53_RS04455 0.60 -0.5 1,035,185 - LRK53_RS04455 0.60 -0.0 1,035,185 - LRK53_RS04455 0.60 -0.3 1,035,185 - LRK53_RS04455 0.60 -1.3 1,035,185 - LRK53_RS04455 0.60 +0.9 1,035,185 - LRK53_RS04455 0.60 -2.1 1,035,185 - LRK53_RS04455 0.60 +0.9 1,035,185 - LRK53_RS04455 0.60 -0.3 1,035,185 - LRK53_RS04455 0.60 +0.2 1,035,185 - LRK53_RS04455 0.60 -0.9 1,035,185 - LRK53_RS04455 0.60 -0.4 1,035,185 - LRK53_RS04455 0.60 +0.3 1,035,185 - LRK53_RS04455 0.60 -2.2 1,035,185 - LRK53_RS04455 0.60 +1.3 1,035,185 - LRK53_RS04455 0.60 -0.9 1,035,185 - LRK53_RS04455 0.60 +0.1 1,035,190 + LRK53_RS04455 0.62 +0.0 1,035,190 + LRK53_RS04455 0.62 -1.2 1,035,190 + LRK53_RS04455 0.62 -1.7 1,035,190 + LRK53_RS04455 0.62 +1.0 1,035,190 + LRK53_RS04455 0.62 -0.5 1,035,190 + LRK53_RS04455 0.62 +1.3 1,035,190 + LRK53_RS04455 0.62 -1.5 1,035,190 + LRK53_RS04455 0.62 -1.4 1,035,190 + LRK53_RS04455 0.62 -0.5 1,035,190 + LRK53_RS04455 0.62 -0.5 1,035,190 + LRK53_RS04455 0.62 +1.0 1,035,190 + LRK53_RS04455 0.62 +0.1 1,035,190 + LRK53_RS04455 0.62 -0.7 1,035,190 + LRK53_RS04455 0.62 -1.3 1,035,190 + LRK53_RS04455 0.62 -0.3 1,035,190 + LRK53_RS04455 0.62 -0.3 1,035,190 + LRK53_RS04455 0.62 -0.0 1,035,190 + LRK53_RS04455 0.62 +0.7 1,035,190 + LRK53_RS04455 0.62 -0.3 1,035,190 + LRK53_RS04455 0.62 -1.0 1,035,191 - LRK53_RS04455 0.62 +0.2 1,035,191 - LRK53_RS04455 0.62 -0.6 1,035,191 - LRK53_RS04455 0.62 -0.9 1,035,191 - LRK53_RS04455 0.62 -1.0 1,035,191 - LRK53_RS04455 0.62 -0.7 1,035,191 - LRK53_RS04455 0.62 -0.7 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 -0.9 1,035,191 - LRK53_RS04455 0.62 -0.5 1,035,191 - LRK53_RS04455 0.62 +0.8 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 -0.3 1,035,191 - LRK53_RS04455 0.62 -0.7 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 +2.1 1,035,191 - LRK53_RS04455 0.62 -1.5 1,035,311 + -0.4 1,035,311 + -1.6 1,035,311 + +0.6 1,035,311 + -0.2 1,035,311 + +0.3 1,035,312 - +0.7 1,035,312 - +0.3 1,035,312 - +2.6 1,035,312 - -0.7 1,035,312 - -0.4 1,035,312 - -0.4 1,035,312 - -1.1 1,035,312 - -0.5 1,035,312 - -0.8 1,035,312 - -0.2 1,035,338 + -0.6 1,035,339 - -0.6 1,035,448 + -1.9 1,035,448 + +2.0 1,035,449 - +2.6
Or see this region's nucleotide sequence