Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03935

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03930 and LRK53_RS03935 are separated by 95 nucleotidesLRK53_RS03935 and LRK53_RS03940 are separated by 63 nucleotidesLRK53_RS03940 and LRK53_RS03945 are separated by 27 nucleotidesLRK53_RS03945 and LRK53_RS03950 overlap by 14 nucleotides LRK53_RS03930: LRK53_RS03930 - ferrochelatase, at 921,725 to 922,780 _RS03930 LRK53_RS03935: LRK53_RS03935 - lipid-binding SYLF domain-containing protein, at 922,876 to 923,565 _RS03935 LRK53_RS03940: LRK53_RS03940 - twin-arginine translocase TatA/TatE family subunit, at 923,629 to 923,868 _RS03940 LRK53_RS03945: LRK53_RS03945 - Sec-independent protein translocase protein TatB, at 923,896 to 924,336 _RS03945 LRK53_RS03950: LRK53_RS03950 - twin-arginine translocase subunit TatC, at 924,323 to 925,081 _RS03950 Position (kb) 922 923 924Strain fitness (log2 ratio) -2 -1 0 1 2at 922.762 kb on - strandat 922.762 kb on - strandat 922.762 kb on - strandat 922.762 kb on - strandat 922.810 kb on - strandat 922.810 kb on - strandat 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.368 kb on + strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.369 kb on - strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.374 kb on + strand, within LRK53_RS03935at 923.375 kb on - strand, within LRK53_RS03935at 923.375 kb on - strand, within LRK53_RS03935at 923.375 kb on - strand, within LRK53_RS03935at 923.375 kb on - strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.437 kb on + strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.438 kb on - strand, within LRK53_RS03935at 923.458 kb on + strand, within LRK53_RS03935at 923.459 kb on - strand, within LRK53_RS03935at 923.459 kb on - strand, within LRK53_RS03935at 923.459 kb on - strand, within LRK53_RS03935at 923.459 kb on - strand, within LRK53_RS03935at 923.459 kb on - strand, within LRK53_RS03935at 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.551 kb on + strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.552 kb on - strandat 923.617 kb on + strandat 923.617 kb on + strandat 923.617 kb on + strandat 923.617 kb on + strandat 923.617 kb on + strandat 923.617 kb on + strandat 923.866 kb on + strandat 923.866 kb on + strandat 923.866 kb on + strandat 923.866 kb on + strandat 923.866 kb on + strandat 923.866 kb on + strandat 923.866 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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922,762 - -0.4
922,762 - -1.4
922,762 - +1.2
922,762 - +0.2
922,810 - +1.2
922,810 - +1.2
923,368 + LRK53_RS03935 0.71 -0.8
923,368 + LRK53_RS03935 0.71 +0.2
923,368 + LRK53_RS03935 0.71 +0.2
923,368 + LRK53_RS03935 0.71 -1.8
923,368 + LRK53_RS03935 0.71 -1.9
923,368 + LRK53_RS03935 0.71 -0.4
923,368 + LRK53_RS03935 0.71 -0.3
923,368 + LRK53_RS03935 0.71 -0.4
923,368 + LRK53_RS03935 0.71 -0.9
923,368 + LRK53_RS03935 0.71 -1.2
923,368 + LRK53_RS03935 0.71 -1.2
923,368 + LRK53_RS03935 0.71 -1.4
923,368 + LRK53_RS03935 0.71 +1.2
923,368 + LRK53_RS03935 0.71 +0.7
923,368 + LRK53_RS03935 0.71 -1.3
923,368 + LRK53_RS03935 0.71 -0.8
923,368 + LRK53_RS03935 0.71 +0.8
923,369 - LRK53_RS03935 0.71 -1.1
923,369 - LRK53_RS03935 0.71 -0.1
923,369 - LRK53_RS03935 0.71 -1.2
923,369 - LRK53_RS03935 0.71 -1.2
923,369 - LRK53_RS03935 0.71 +0.6
923,369 - LRK53_RS03935 0.71 +1.0
923,369 - LRK53_RS03935 0.71 -0.3
923,369 - LRK53_RS03935 0.71 -0.9
923,369 - LRK53_RS03935 0.71 -0.2
923,369 - LRK53_RS03935 0.71 +1.2
923,369 - LRK53_RS03935 0.71 -2.0
923,369 - LRK53_RS03935 0.71 -0.9
923,369 - LRK53_RS03935 0.71 -0.3
923,369 - LRK53_RS03935 0.71 -1.0
923,374 + LRK53_RS03935 0.72 -2.2
923,374 + LRK53_RS03935 0.72 -1.0
923,374 + LRK53_RS03935 0.72 +0.0
923,374 + LRK53_RS03935 0.72 +0.2
923,374 + LRK53_RS03935 0.72 -1.1
923,374 + LRK53_RS03935 0.72 -0.1
923,374 + LRK53_RS03935 0.72 -0.7
923,374 + LRK53_RS03935 0.72 -0.2
923,374 + LRK53_RS03935 0.72 -2.4
923,374 + LRK53_RS03935 0.72 -0.3
923,375 - LRK53_RS03935 0.72 -1.5
923,375 - LRK53_RS03935 0.72 -1.3
923,375 - LRK53_RS03935 0.72 -0.6
923,375 - LRK53_RS03935 0.72 +1.2
923,437 + LRK53_RS03935 0.81 -0.8
923,437 + LRK53_RS03935 0.81 -1.2
923,437 + LRK53_RS03935 0.81 +0.6
923,437 + LRK53_RS03935 0.81 -1.4
923,437 + LRK53_RS03935 0.81 +1.4
923,437 + LRK53_RS03935 0.81 -0.7
923,437 + LRK53_RS03935 0.81 +0.3
923,437 + LRK53_RS03935 0.81 +2.2
923,437 + LRK53_RS03935 0.81 +2.2
923,437 + LRK53_RS03935 0.81 -0.5
923,438 - LRK53_RS03935 0.81 +0.4
923,438 - LRK53_RS03935 0.81 -1.2
923,438 - LRK53_RS03935 0.81 -0.7
923,438 - LRK53_RS03935 0.81 -0.2
923,438 - LRK53_RS03935 0.81 -0.3
923,438 - LRK53_RS03935 0.81 -1.2
923,438 - LRK53_RS03935 0.81 +0.6
923,438 - LRK53_RS03935 0.81 +0.0
923,458 + LRK53_RS03935 0.84 +0.6
923,459 - LRK53_RS03935 0.84 -1.3
923,459 - LRK53_RS03935 0.84 -1.6
923,459 - LRK53_RS03935 0.84 -1.0
923,459 - LRK53_RS03935 0.84 -0.6
923,459 - LRK53_RS03935 0.84 -2.0
923,551 + -0.4
923,551 + -1.1
923,551 + -0.4
923,551 + -1.8
923,551 + -0.2
923,551 + -0.6
923,551 + -0.8
923,551 + -1.6
923,551 + +0.8
923,551 + -0.2
923,551 + -0.6
923,551 + -2.1
923,552 - -1.2
923,552 - -1.2
923,552 - +0.2
923,552 - +1.2
923,552 - +1.7
923,552 - -0.8
923,552 - -1.4
923,552 - -0.8
923,552 - -1.2
923,552 - -1.2
923,552 - -0.3
923,552 - -0.6
923,617 + +0.2
923,617 + -0.8
923,617 + -1.4
923,617 + +1.2
923,617 + +2.7
923,617 + +0.2
923,866 + +0.1
923,866 + -1.0
923,866 + -1.0
923,866 + +1.2
923,866 + +0.1
923,866 + -1.0
923,866 + +0.0

Or see this region's nucleotide sequence