Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03620

Experiment: NLDM_defined; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03615 and LRK53_RS03620 overlap by 1 nucleotidesLRK53_RS03620 and LRK53_RS03625 overlap by 4 nucleotidesLRK53_RS03625 and LRK53_RS03630 are separated by 174 nucleotides LRK53_RS03615: LRK53_RS03615 - GldG family protein, at 852,489 to 853,844 _RS03615 LRK53_RS03620: LRK53_RS03620 - ABC transporter permease, at 853,844 to 854,614 _RS03620 LRK53_RS03625: LRK53_RS03625 - ABC transporter ATP-binding protein, at 854,611 to 855,375 _RS03625 LRK53_RS03630: LRK53_RS03630 - fatty acid desaturase, at 855,550 to 856,743 _RS03630 Position (kb) 853 854 855Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 853.015 kb on + strand, within LRK53_RS03615at 853.186 kb on + strand, within LRK53_RS03615at 853.186 kb on + strand, within LRK53_RS03615at 853.186 kb on + strand, within LRK53_RS03615at 853.186 kb on + strand, within LRK53_RS03615at 853.187 kb on - strand, within LRK53_RS03615at 853.187 kb on - strand, within LRK53_RS03615at 853.187 kb on - strand, within LRK53_RS03615at 853.248 kb on + strand, within LRK53_RS03615at 853.248 kb on + strand, within LRK53_RS03615at 853.248 kb on + strand, within LRK53_RS03615at 853.248 kb on + strand, within LRK53_RS03615at 853.248 kb on + strand, within LRK53_RS03615at 853.248 kb on + strand, within LRK53_RS03615at 853.249 kb on - strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.489 kb on + strand, within LRK53_RS03615at 853.490 kb on - strand, within LRK53_RS03615at 853.490 kb on - strand, within LRK53_RS03615at 853.490 kb on - strand, within LRK53_RS03615at 853.490 kb on - strand, within LRK53_RS03615at 853.490 kb on - strand, within LRK53_RS03615at 853.588 kb on - strand, within LRK53_RS03615at 853.597 kb on + strand, within LRK53_RS03615at 853.598 kb on - strand, within LRK53_RS03615at 853.651 kb on + strand, within LRK53_RS03615at 853.651 kb on + strand, within LRK53_RS03615at 853.651 kb on + strand, within LRK53_RS03615at 853.651 kb on + strand, within LRK53_RS03615at 853.651 kb on + strand, within LRK53_RS03615at 853.651 kb on + strand, within LRK53_RS03615at 853.652 kb on - strand, within LRK53_RS03615at 853.652 kb on - strand, within LRK53_RS03615at 853.833 kb on + strandat 853.833 kb on + strandat 853.833 kb on + strandat 853.833 kb on + strandat 853.834 kb on - strandat 853.834 kb on - strandat 853.834 kb on - strandat 853.834 kb on - strandat 853.834 kb on - strandat 853.834 kb on - strandat 853.834 kb on - strandat 853.834 kb on - strandat 853.834 kb on - strandat 854.225 kb on + strand, within LRK53_RS03620at 854.226 kb on - strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.262 kb on + strand, within LRK53_RS03620at 854.263 kb on - strand, within LRK53_RS03620at 854.263 kb on - strand, within LRK53_RS03620at 854.516 kb on + strand, within LRK53_RS03620at 855.256 kb on + strand, within LRK53_RS03625at 855.256 kb on + strand, within LRK53_RS03625at 855.256 kb on + strand, within LRK53_RS03625at 855.256 kb on + strand, within LRK53_RS03625at 855.256 kb on + strand, within LRK53_RS03625at 855.257 kb on - strand, within LRK53_RS03625at 855.257 kb on - strand, within LRK53_RS03625at 855.405 kb on - strandat 855.445 kb on + strandat 855.445 kb on + strandat 855.445 kb on + strandat 855.446 kb on - strandat 855.446 kb on - strandat 855.446 kb on - strandat 855.470 kb on + strandat 855.471 kb on - strandat 855.471 kb on - strandat 855.516 kb on + strandat 855.516 kb on + strandat 855.516 kb on + strandat 855.516 kb on + strandat 855.516 kb on + strandat 855.516 kb on + strandat 855.516 kb on + strandat 855.516 kb on + strandat 855.517 kb on - strandat 855.517 kb on - strandat 855.517 kb on - strandat 855.517 kb on - strandat 855.517 kb on - strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.563 kb on + strandat 855.564 kb on - strandat 855.564 kb on - strandat 855.564 kb on - strandat 855.564 kb on - strandat 855.564 kb on - strandat 855.564 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
remove
853,015 + LRK53_RS03615 0.39 -0.1
853,186 + LRK53_RS03615 0.51 -0.6
853,186 + LRK53_RS03615 0.51 -1.6
853,186 + LRK53_RS03615 0.51 -1.1
853,186 + LRK53_RS03615 0.51 +0.2
853,187 - LRK53_RS03615 0.51 +0.0
853,187 - LRK53_RS03615 0.51 -0.7
853,187 - LRK53_RS03615 0.51 -2.7
853,248 + LRK53_RS03615 0.56 +0.4
853,248 + LRK53_RS03615 0.56 +0.8
853,248 + LRK53_RS03615 0.56 -1.0
853,248 + LRK53_RS03615 0.56 -2.2
853,248 + LRK53_RS03615 0.56 +1.4
853,248 + LRK53_RS03615 0.56 +0.2
853,249 - LRK53_RS03615 0.56 -1.2
853,489 + LRK53_RS03615 0.74 -0.8
853,489 + LRK53_RS03615 0.74 +1.2
853,489 + LRK53_RS03615 0.74 -1.1
853,489 + LRK53_RS03615 0.74 -0.4
853,489 + LRK53_RS03615 0.74 -1.1
853,489 + LRK53_RS03615 0.74 -1.1
853,489 + LRK53_RS03615 0.74 +0.8
853,489 + LRK53_RS03615 0.74 -0.1
853,490 - LRK53_RS03615 0.74 -1.2
853,490 - LRK53_RS03615 0.74 +0.4
853,490 - LRK53_RS03615 0.74 -0.9
853,490 - LRK53_RS03615 0.74 +0.2
853,490 - LRK53_RS03615 0.74 -2.0
853,588 - LRK53_RS03615 0.81 -1.6
853,597 + LRK53_RS03615 0.82 -1.1
853,598 - LRK53_RS03615 0.82 -0.4
853,651 + LRK53_RS03615 0.86 -1.1
853,651 + LRK53_RS03615 0.86 -0.9
853,651 + LRK53_RS03615 0.86 +0.2
853,651 + LRK53_RS03615 0.86 -0.9
853,651 + LRK53_RS03615 0.86 -0.0
853,651 + LRK53_RS03615 0.86 -1.3
853,652 - LRK53_RS03615 0.86 -3.2
853,652 - LRK53_RS03615 0.86 +1.2
853,833 + +0.2
853,833 + -2.1
853,833 + +0.2
853,833 + -2.4
853,834 - +0.2
853,834 - +0.7
853,834 - +0.4
853,834 - -0.3
853,834 - -2.3
853,834 - +2.2
853,834 - -0.1
853,834 - -1.6
853,834 - -1.0
854,225 + LRK53_RS03620 0.49 +2.2
854,226 - LRK53_RS03620 0.50 +1.0
854,262 + LRK53_RS03620 0.54 -0.4
854,262 + LRK53_RS03620 0.54 +0.6
854,262 + LRK53_RS03620 0.54 -1.4
854,262 + LRK53_RS03620 0.54 +2.4
854,262 + LRK53_RS03620 0.54 -0.5
854,262 + LRK53_RS03620 0.54 -0.7
854,262 + LRK53_RS03620 0.54 +1.5
854,262 + LRK53_RS03620 0.54 +1.6
854,262 + LRK53_RS03620 0.54 -0.7
854,262 + LRK53_RS03620 0.54 +0.2
854,262 + LRK53_RS03620 0.54 -0.4
854,263 - LRK53_RS03620 0.54 -1.5
854,263 - LRK53_RS03620 0.54 +0.6
854,516 + LRK53_RS03620 0.87 +0.7
855,256 + LRK53_RS03625 0.84 -2.7
855,256 + LRK53_RS03625 0.84 -0.8
855,256 + LRK53_RS03625 0.84 -1.6
855,256 + LRK53_RS03625 0.84 -1.3
855,256 + LRK53_RS03625 0.84 +0.6
855,257 - LRK53_RS03625 0.84 +2.2
855,257 - LRK53_RS03625 0.84 +1.2
855,405 - +0.2
855,445 + +0.9
855,445 + -0.7
855,445 + -0.4
855,446 - +0.6
855,446 - +0.3
855,446 - -2.9
855,470 + +0.5
855,471 - -0.6
855,471 - -1.1
855,516 + -1.1
855,516 + +0.2
855,516 + +0.2
855,516 + +0.0
855,516 + -0.6
855,516 + -2.7
855,516 + +0.4
855,516 + +0.3
855,517 - -0.5
855,517 - +0.2
855,517 - +0.0
855,517 - -2.3
855,517 - -0.7
855,563 + -1.4
855,563 + +0.1
855,563 + -1.1
855,563 + -0.4
855,563 + -0.9
855,563 + -0.4
855,563 + -0.5
855,563 + +0.3
855,563 + -1.2
855,563 + -1.0
855,564 - -0.6
855,564 - -1.5
855,564 - -0.6
855,564 - -1.6
855,564 - +0.1
855,564 - -1.4

Or see this region's nucleotide sequence