Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03605 and LRK53_RS03610 are separated by 16 nucleotides LRK53_RS03610 and LRK53_RS03615 are separated by 3 nucleotides LRK53_RS03615 and LRK53_RS03620 overlap by 1 nucleotides LRK53_RS03620 and LRK53_RS03625 overlap by 4 nucleotides
LRK53_RS03605: LRK53_RS03605 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 851,150 to 851,977
_RS03605
LRK53_RS03610: LRK53_RS03610 - hypothetical protein, at 851,994 to 852,485
_RS03610
LRK53_RS03615: LRK53_RS03615 - GldG family protein, at 852,489 to 853,844
_RS03615
LRK53_RS03620: LRK53_RS03620 - ABC transporter permease, at 853,844 to 854,614
_RS03620
LRK53_RS03625: LRK53_RS03625 - ABC transporter ATP-binding protein, at 854,611 to 855,375
_RS03625
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 852.037 kb on + strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.048 kb on + strand, within LRK53_RS03610 at 852.049 kb on - strand, within LRK53_RS03610 at 852.049 kb on - strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 853.015 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.187 kb on - strand, within LRK53_RS03615 at 853.187 kb on - strand, within LRK53_RS03615 at 853.187 kb on - strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.249 kb on - strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.489 kb on + strand, within LRK53_RS03615 at 853.490 kb on - strand, within LRK53_RS03615 at 853.490 kb on - strand, within LRK53_RS03615 at 853.490 kb on - strand, within LRK53_RS03615 at 853.490 kb on - strand, within LRK53_RS03615 at 853.490 kb on - strand, within LRK53_RS03615 at 853.588 kb on - strand, within LRK53_RS03615 at 853.597 kb on + strand, within LRK53_RS03615 at 853.598 kb on - strand, within LRK53_RS03615 at 853.651 kb on + strand, within LRK53_RS03615 at 853.651 kb on + strand, within LRK53_RS03615 at 853.651 kb on + strand, within LRK53_RS03615 at 853.651 kb on + strand, within LRK53_RS03615 at 853.651 kb on + strand, within LRK53_RS03615 at 853.651 kb on + strand, within LRK53_RS03615 at 853.652 kb on - strand, within LRK53_RS03615 at 853.652 kb on - strand, within LRK53_RS03615 at 853.833 kb on + strand at 853.833 kb on + strand at 853.833 kb on + strand at 853.833 kb on + strand at 853.834 kb on - strand at 853.834 kb on - strand at 853.834 kb on - strand at 853.834 kb on - strand at 853.834 kb on - strand at 853.834 kb on - strand at 853.834 kb on - strand at 853.834 kb on - strand at 853.834 kb on - strand at 854.225 kb on + strand, within LRK53_RS03620 at 854.226 kb on - strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.262 kb on + strand, within LRK53_RS03620 at 854.263 kb on - strand, within LRK53_RS03620 at 854.263 kb on - strand, within LRK53_RS03620 at 854.516 kb on + strand, within LRK53_RS03620
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 851,802 + LRK53_RS03605 0.79 +1.2 851,802 + LRK53_RS03605 0.79 -1.8 851,802 + LRK53_RS03605 0.79 +1.7 851,802 + LRK53_RS03605 0.79 -1.5 851,802 + LRK53_RS03605 0.79 -0.0 851,802 + LRK53_RS03605 0.79 +1.8 851,802 + LRK53_RS03605 0.79 -0.4 851,802 + LRK53_RS03605 0.79 +0.4 851,802 + LRK53_RS03605 0.79 -1.0 851,803 - LRK53_RS03605 0.79 +0.6 851,803 - LRK53_RS03605 0.79 -0.3 851,803 - LRK53_RS03605 0.79 -0.5 851,803 - LRK53_RS03605 0.79 -0.5 851,803 - LRK53_RS03605 0.79 +0.2 851,803 - LRK53_RS03605 0.79 -0.9 851,803 - LRK53_RS03605 0.79 +0.2 851,803 - LRK53_RS03605 0.79 +0.7 851,928 + -2.8 851,928 + +0.2 851,928 + +0.3 851,928 + -1.1 851,928 + -1.5 851,928 + -0.2 851,928 + -0.0 851,929 - +1.2 851,929 - +1.2 851,929 - +0.1 851,929 - +0.3 851,929 - -0.2 851,929 - -0.7 851,929 - +0.2 852,037 + -2.4 852,038 - -1.1 852,038 - -1.5 852,038 - +1.0 852,038 - +1.2 852,038 - -1.1 852,048 + LRK53_RS03610 0.11 -0.8 852,049 - LRK53_RS03610 0.11 -0.8 852,049 - LRK53_RS03610 0.11 +2.8 852,079 + LRK53_RS03610 0.17 +1.2 852,079 + LRK53_RS03610 0.17 +1.2 852,079 + LRK53_RS03610 0.17 -0.6 852,079 + LRK53_RS03610 0.17 +1.2 852,079 + LRK53_RS03610 0.17 -1.6 852,080 - LRK53_RS03610 0.17 -0.2 852,080 - LRK53_RS03610 0.17 +1.0 852,080 - LRK53_RS03610 0.17 -0.6 852,080 - LRK53_RS03610 0.17 -0.9 852,080 - LRK53_RS03610 0.17 +0.8 852,307 + LRK53_RS03610 0.64 +0.2 852,307 + LRK53_RS03610 0.64 +1.8 852,307 + LRK53_RS03610 0.64 +1.3 852,307 + LRK53_RS03610 0.64 +0.2 852,307 + LRK53_RS03610 0.64 -3.1 852,307 + LRK53_RS03610 0.64 -0.1 853,015 + LRK53_RS03615 0.39 -0.1 853,186 + LRK53_RS03615 0.51 -0.6 853,186 + LRK53_RS03615 0.51 -1.6 853,186 + LRK53_RS03615 0.51 -1.1 853,186 + LRK53_RS03615 0.51 +0.2 853,187 - LRK53_RS03615 0.51 +0.0 853,187 - LRK53_RS03615 0.51 -0.7 853,187 - LRK53_RS03615 0.51 -2.7 853,248 + LRK53_RS03615 0.56 +0.4 853,248 + LRK53_RS03615 0.56 +0.8 853,248 + LRK53_RS03615 0.56 -1.0 853,248 + LRK53_RS03615 0.56 -2.2 853,248 + LRK53_RS03615 0.56 +1.4 853,248 + LRK53_RS03615 0.56 +0.2 853,249 - LRK53_RS03615 0.56 -1.2 853,489 + LRK53_RS03615 0.74 -0.8 853,489 + LRK53_RS03615 0.74 +1.2 853,489 + LRK53_RS03615 0.74 -1.1 853,489 + LRK53_RS03615 0.74 -0.4 853,489 + LRK53_RS03615 0.74 -1.1 853,489 + LRK53_RS03615 0.74 -1.1 853,489 + LRK53_RS03615 0.74 +0.8 853,489 + LRK53_RS03615 0.74 -0.1 853,490 - LRK53_RS03615 0.74 -1.2 853,490 - LRK53_RS03615 0.74 +0.4 853,490 - LRK53_RS03615 0.74 -0.9 853,490 - LRK53_RS03615 0.74 +0.2 853,490 - LRK53_RS03615 0.74 -2.0 853,588 - LRK53_RS03615 0.81 -1.6 853,597 + LRK53_RS03615 0.82 -1.1 853,598 - LRK53_RS03615 0.82 -0.4 853,651 + LRK53_RS03615 0.86 -1.1 853,651 + LRK53_RS03615 0.86 -0.9 853,651 + LRK53_RS03615 0.86 +0.2 853,651 + LRK53_RS03615 0.86 -0.9 853,651 + LRK53_RS03615 0.86 -0.0 853,651 + LRK53_RS03615 0.86 -1.3 853,652 - LRK53_RS03615 0.86 -3.2 853,652 - LRK53_RS03615 0.86 +1.2 853,833 + +0.2 853,833 + -2.1 853,833 + +0.2 853,833 + -2.4 853,834 - +0.2 853,834 - +0.7 853,834 - +0.4 853,834 - -0.3 853,834 - -2.3 853,834 - +2.2 853,834 - -0.1 853,834 - -1.6 853,834 - -1.0 854,225 + LRK53_RS03620 0.49 +2.2 854,226 - LRK53_RS03620 0.50 +1.0 854,262 + LRK53_RS03620 0.54 -0.4 854,262 + LRK53_RS03620 0.54 +0.6 854,262 + LRK53_RS03620 0.54 -1.4 854,262 + LRK53_RS03620 0.54 +2.4 854,262 + LRK53_RS03620 0.54 -0.5 854,262 + LRK53_RS03620 0.54 -0.7 854,262 + LRK53_RS03620 0.54 +1.5 854,262 + LRK53_RS03620 0.54 +1.6 854,262 + LRK53_RS03620 0.54 -0.7 854,262 + LRK53_RS03620 0.54 +0.2 854,262 + LRK53_RS03620 0.54 -0.4 854,263 - LRK53_RS03620 0.54 -1.5 854,263 - LRK53_RS03620 0.54 +0.6 854,516 + LRK53_RS03620 0.87 +0.7
Or see this region's nucleotide sequence