Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03550 and LRK53_RS03555 are separated by 118 nucleotides LRK53_RS03555 and LRK53_RS03560 are separated by 31 nucleotides
LRK53_RS03550: LRK53_RS03550 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 836,878 to 837,645
_RS03550
LRK53_RS03555: LRK53_RS03555 - amidohydrolase family protein, at 837,764 to 839,119
_RS03555
LRK53_RS03560: LRK53_RS03560 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 839,151 to 841,817
_RS03560
Position (kb) 837
838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 836.888 kb on + strand at 836.888 kb on + strand at 836.888 kb on + strand at 836.888 kb on + strand at 837.657 kb on + strand at 837.657 kb on + strand at 837.658 kb on - strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.795 kb on + strand at 837.795 kb on + strand at 837.795 kb on + strand at 837.796 kb on - strand at 837.796 kb on - strand at 837.796 kb on - strand at 837.996 kb on + strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.174 kb on - strand, within LRK53_RS03555 at 838.174 kb on - strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.465 kb on - strand, within LRK53_RS03555 at 838.465 kb on - strand, within LRK53_RS03555 at 838.782 kb on + strand, within LRK53_RS03555 at 838.782 kb on + strand, within LRK53_RS03555 at 838.782 kb on + strand, within LRK53_RS03555 at 838.782 kb on + strand, within LRK53_RS03555 at 838.783 kb on - strand, within LRK53_RS03555 at 838.783 kb on - strand, within LRK53_RS03555 at 838.816 kb on + strand, within LRK53_RS03555 at 838.816 kb on + strand, within LRK53_RS03555 at 838.817 kb on - strand, within LRK53_RS03555 at 838.817 kb on - strand, within LRK53_RS03555 at 838.817 kb on - strand, within LRK53_RS03555 at 838.817 kb on - strand, within LRK53_RS03555 at 838.817 kb on - strand, within LRK53_RS03555 at 838.817 kb on - strand, within LRK53_RS03555 at 838.817 kb on - strand, within LRK53_RS03555 at 838.894 kb on - strand, within LRK53_RS03555 at 839.152 kb on + strand at 839.153 kb on - strand at 839.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 836,888 + -1.4 836,888 + +0.2 836,888 + -1.2 836,888 + -1.3 837,657 + -0.8 837,657 + -0.8 837,658 - +0.6 837,760 + -1.9 837,760 + -2.0 837,760 + -0.3 837,760 + -0.1 837,760 + +2.1 837,760 + -0.4 837,760 + -1.6 837,760 + -1.3 837,760 + -0.8 837,760 + +0.4 837,760 + -1.2 837,761 - -0.1 837,761 - -1.2 837,761 - +0.5 837,761 - +0.6 837,761 - -1.2 837,761 - -0.4 837,761 - -0.2 837,761 - +0.2 837,795 + +0.2 837,795 + +0.9 837,795 + -0.9 837,796 - +0.7 837,796 - -1.5 837,796 - -0.4 837,996 + LRK53_RS03555 0.17 +1.2 837,997 - LRK53_RS03555 0.17 +0.6 837,997 - LRK53_RS03555 0.17 -1.6 837,997 - LRK53_RS03555 0.17 -1.2 837,997 - LRK53_RS03555 0.17 +1.7 837,997 - LRK53_RS03555 0.17 -0.4 837,997 - LRK53_RS03555 0.17 +0.9 837,997 - LRK53_RS03555 0.17 -0.4 838,074 + LRK53_RS03555 0.23 +0.1 838,074 + LRK53_RS03555 0.23 -1.4 838,074 + LRK53_RS03555 0.23 +0.7 838,074 + LRK53_RS03555 0.23 +0.6 838,074 + LRK53_RS03555 0.23 +1.2 838,074 + LRK53_RS03555 0.23 -0.4 838,074 + LRK53_RS03555 0.23 -0.1 838,074 + LRK53_RS03555 0.23 -0.3 838,074 + LRK53_RS03555 0.23 -0.0 838,074 + LRK53_RS03555 0.23 +0.2 838,074 + LRK53_RS03555 0.23 -0.2 838,075 - LRK53_RS03555 0.23 -1.6 838,075 - LRK53_RS03555 0.23 -1.3 838,075 - LRK53_RS03555 0.23 +0.1 838,075 - LRK53_RS03555 0.23 -1.0 838,075 - LRK53_RS03555 0.23 -0.7 838,075 - LRK53_RS03555 0.23 -0.4 838,075 - LRK53_RS03555 0.23 -0.1 838,075 - LRK53_RS03555 0.23 +0.6 838,173 + LRK53_RS03555 0.30 +3.2 838,173 + LRK53_RS03555 0.30 +0.2 838,173 + LRK53_RS03555 0.30 +0.9 838,173 + LRK53_RS03555 0.30 -0.2 838,174 - LRK53_RS03555 0.30 +0.4 838,174 - LRK53_RS03555 0.30 -0.8 838,200 + LRK53_RS03555 0.32 -0.8 838,200 + LRK53_RS03555 0.32 +0.5 838,200 + LRK53_RS03555 0.32 -1.3 838,200 + LRK53_RS03555 0.32 -0.1 838,200 + LRK53_RS03555 0.32 -0.3 838,200 + LRK53_RS03555 0.32 +0.9 838,200 + LRK53_RS03555 0.32 -0.3 838,200 + LRK53_RS03555 0.32 -0.7 838,200 + LRK53_RS03555 0.32 +0.7 838,201 - LRK53_RS03555 0.32 -0.4 838,201 - LRK53_RS03555 0.32 +1.2 838,201 - LRK53_RS03555 0.32 +0.6 838,201 - LRK53_RS03555 0.32 +0.4 838,201 - LRK53_RS03555 0.32 +0.4 838,201 - LRK53_RS03555 0.32 -2.0 838,201 - LRK53_RS03555 0.32 +0.3 838,201 - LRK53_RS03555 0.32 -0.8 838,201 - LRK53_RS03555 0.32 +0.5 838,201 - LRK53_RS03555 0.32 -0.6 838,201 - LRK53_RS03555 0.32 -0.0 838,464 + LRK53_RS03555 0.52 -1.3 838,464 + LRK53_RS03555 0.52 -0.6 838,464 + LRK53_RS03555 0.52 -0.9 838,464 + LRK53_RS03555 0.52 +0.9 838,464 + LRK53_RS03555 0.52 +0.2 838,464 + LRK53_RS03555 0.52 -0.1 838,464 + LRK53_RS03555 0.52 +1.2 838,464 + LRK53_RS03555 0.52 +1.2 838,464 + LRK53_RS03555 0.52 +0.6 838,465 - LRK53_RS03555 0.52 -0.7 838,465 - LRK53_RS03555 0.52 +1.6 838,782 + LRK53_RS03555 0.75 -0.4 838,782 + LRK53_RS03555 0.75 -1.2 838,782 + LRK53_RS03555 0.75 +0.4 838,782 + LRK53_RS03555 0.75 -0.2 838,783 - LRK53_RS03555 0.75 -1.2 838,783 - LRK53_RS03555 0.75 -0.2 838,816 + LRK53_RS03555 0.78 -2.0 838,816 + LRK53_RS03555 0.78 -0.8 838,817 - LRK53_RS03555 0.78 -1.3 838,817 - LRK53_RS03555 0.78 -2.2 838,817 - LRK53_RS03555 0.78 -0.4 838,817 - LRK53_RS03555 0.78 +0.3 838,817 - LRK53_RS03555 0.78 +1.4 838,817 - LRK53_RS03555 0.78 +0.1 838,817 - LRK53_RS03555 0.78 +1.2 838,894 - LRK53_RS03555 0.83 +0.2 839,152 + -0.6 839,153 - +0.4 839,153 - +0.6
Or see this region's nucleotide sequence